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List of works by Ignacio Arganda-Carreras

3D Domain Adaptive Instance Segmentation via Cyclic Segmentation GANs

scientific article published in 2023

3D reconstruction of histological sections: Application to mammary gland tissue

scientific article

A generic classification-based method for segmentation of nuclei in 3D images of early embryos.

scientific article

ANHIR: Automatic Non-rigid Histological Image Registration Challenge

scientific article published on 07 April 2020

Automatic registration of serial mammary gland sections

scientific article

BoneJ: Free and extensible bone image analysis in ImageJ

scientific article

Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization

Crowdsourcing the creation of image segmentation algorithms for connectomics

scientific article

Designing Image Analysis Pipelines in Light Microscopy: A Rational Approach

scientific article

Elastic image registration of 2-D gels for differential and repeatability studies

scientific article published in January 2008

Fiji: an open-source platform for biological-image analysis

scientific article

Freeze-Frame Imaging of Synaptic Activity Using SynTagMA

Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts

scientific article

Learning Gaze-aware Compositional GAN from Limited Annotations

scientific article published on 17 May 2024

Mapping social behavior-induced brain activation at cellular resolution in the mouse

scientific article

MitoEM Dataset: Large-scale 3D Mitochondria Instance Segmentation from EM Images

scientific article published on 29 September 2020

MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ

scientific article

Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy

scientific article published on 10 April 2019

Non-rigid consistent registration of 2D image sequences.

scientific article published on 30 September 2010

NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei

scientific article

Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling

scientific article published on 9 April 2014

Phenotyping nematode feeding sites: three-dimensional reconstruction and volumetric measurements of giant cells induced by root-knot nematodes in Arabidopsis

scientific article published on 22 January 2015

Publisher Correction: Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy

scientific article published on 09 May 2019

Serial two-photon tomography for automated ex vivo mouse brain imaging

scientific article

The human remains from Axlor (Dima, Biscay, northern Iberian Peninsula)

scientific article published on 30 December 2019

Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification

scientific article

TrakEM2 software for neural circuit reconstruction

scientific article (publication date: 2012)

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