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List of works by David Landsman

A Genome-Wide Transcriptional Analysis of the Mitotic Cell Cycle ⬇️

scientific article (publication date: July 1998)

A unified phylogeny-based nomenclature for histone variants

scientific article

A variety of DNA-binding and multimeric proteins contain the histone fold motif.

scientific article

AT-hook motifs identified in a wide variety of DNA-binding proteins ⬇️

scientific article published on October 1, 1998

Aberrant DNase I digestion kinetics of nucleosomal core particles from sea urchin sperm

scientific article published on 01 August 1988

Alignments anchored on genomic landmarks can aid in the identification of regulatory elements

scientific article published in June 2005

Analysis of biological features associated with meiotic recombination hot and cold spots in Saccharomyces cerevisiae

scientific article

Analysis of the functional role of conserved residues in the protein subunit of ribonuclease P from Escherichia coli.

scientific article

Assessment of the transcriptional activation potential of the HMG chromosomal proteins.

scientific article

B-ZIP proteins encoded by the Drosophila genome: evaluation of potential dimerization partners

scientific article

Binding of HMGN proteins to cell specific enhancers stabilizes cell identity

scientific article published in Nature Communications

Characterization of sequence variability in nucleosome core histone folds.

scientific article

Chromosomal protein HMG-14. Identification, characterization, and chromosome localization of a functional gene from the large human multigene family

scientific article

Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions

scientific article published on 14 December 2015

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

scientific article

DATABASE: A new forum for biological databases and curation

scientific article

Database resources of the National Center for Biotechnology Information

scientific article (published 2012-01-01)

Database resources of the National Center for Biotechnology Information

scientific article

Database resources of the National Center for Biotechnology Information

scientific article (published 2010-01-01)

Database resources of the National Center for Biotechnology Information

scientific article (publication date: 2007)

Database resources of the National Center for Biotechnology Information

scientific article (publication date: 2009)

Database resources of the National Center for Biotechnology Information

Dataset of Arabidopsis plants that overexpress FT driven by a meristem-specific KNAT1 promoter

scientific article

Differences in local genomic context of bound and unbound motifs.

scientific article

Effects of HMGN variants on the cellular transcription profile ⬇️

scientific article published on January 28, 2011

Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA

scientific article

Exchange of proteins during immunofractionation of chromatin

scientific article published on 01 March 1986

Expressed sequence tags (ESTs)

article

Expression patterns of protein kinases correlate with gene architecture and evolutionary rates

scientific article

Functional compensation among HMGN variants modulates the DNase I hypersensitive sites at enhancers

scientific article published on 8 July 2015

GCN5-related histone N-acetyltransferases belong to a diverse superfamily that includes the yeast SPT10 protein.

scientific article

GTax: improving de novo transcriptome assembly by removing foreign RNA contamination

scientific article published in 2024

Genetic diversity and population structure in Physalis peruviana and related taxa based on InDels and SNPs derived from COSII and IRG markers

scientific article published in December 2015

Genome Sequence of the Banana Plant Growth-Promoting Rhizobacterium Bacillus amyloliquefaciens BS006

scientific article published on 25 November 2015

Genome Sequence of the Banana Plant Growth-Promoting Rhizobacterium Pseudomonas fluorescens PS006

scientific article

Genome Sequences of Multidrug-Resistant Salmonella enterica Serovar Paratyphi B (dT+) and Heidelberg Strains from the Colombian Poultry Chain.

scientific article published on 22 October 2015

Genome-wide DNA methylation patterns in LSH mutant reveals de-repression of repeat elements and redundant epigenetic silencing pathways

scientific article

Genome-wide association of mediator and RNA polymerase II in wild-type and mediator mutant yeast

scientific article

Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements.

scientific article

HMGN proteins modulate chromatin regulatory sites and gene expression during activation of naïve B cells

scientific article

HMGN4, a newly discovered nucleosome-binding protein encoded by an intronless gene

scientific article (publication date: May 2001)

Histone Sequence Database: a compilation of highly-conserved nucleoprotein sequences

scientific article

Histone Sequence Database: new histone fold family members ⬇️

scientific article published on January 1, 1998

Histone Sequence Database: sequences, structures, post-translational modifications and genetic loci

scientific article

Histone and histone fold sequences and structures: a database

scientific article

Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are members of an ancient protein superfamily ⬇️

scientific article published on September 15, 1997

Histone structure and nucleosome stability

scientific article published in October 2005

Histone tails as signaling antennas of chromatin

scientific article published on 03 December 2020

HistoneDB 2.0: a histone database with variants--an integrated resource to explore histones and their variants

scientific article

Identification of cis-regulatory elements in gene co-expression networks using A-GLAM.

scientific article published on January 2009

Identification of immunity related genes to study the Physalis peruviana--Fusarium oxysporum pathosystem

scientific article published on 03 July 2013

Identifying related L1 retrotransposons by analyzing 3' transduced sequences

scientific article

Immunofractionation of DNA sequences associated with HMG-17 in chromatin

scientific article published on 01 October 1986

Immunofractionation of chromatin regions associated with histone H1o

scientific article published on 01 October 1986

In silico identification and characterization of the ion transport specificity for P-type ATPases in the Mycobacterium tuberculosis complex

scientific article

Key challenges for the creation and maintenance of specialist protein resources

scientific article

Log-odds sequence logos

scientific article

Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genome

scientific article

Mining core histone sequences from public protein databases

scientific article published in January 2004

Modulation of the cellular ratio of chromosomal high mobility group proteins 14 to 17 in transfected cells

scientific article published in Journal of Biological Chemistry

Molecular archeology of L1 insertions in the human genome.

scientific article

Molecular recognition of nucleosomes by binding partners

scientific article published on 13 April 2019

Mouse non-histone chromosomal protein HMG-17 cDNA sequence

scientific article

Multiple independent evolutionary solutions to core histone gene regulation

scientific article

No HMG-1 box signature

scientific article published in Nature

Nucleosome adaptability conferred by sequence and structural variations in histone H2A-H2B dimers

scientific article

Obituary: In memory of Jack Leunissen

scientific article (publication date: May 2013)

PROSPECT improves cis-acting regulatory element prediction by integrating expression profile data with consensus pattern searches.

scientific article

Predictive methods using protein sequences.

scientific article

Promoter analysis: gene regulatory motif identification with A-GLAM.

scientific article

RNP-1, an RNA-binding motif is conserved in the DNA-binding cold shock domain ⬇️

scientific article published on June 11, 1992

Retropseudogenes for human chromosomal protein HMG-17.

scientific article published on October 1987

Role of the pre-initiation complex in Mediator recruitment and dynamics

scientific article published on 12 December 2018

Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements

scientific article published on 8 September 2006

Statistical analysis of over-represented words in human promoter sequences

scientific article

Structural interpretation of DNA-protein hydroxyl-radical footprinting experiments with high resolution using HYDROID

TLX1/HOX11-induced hematopoietic differentiation blockade

scientific article

Ten simple rules for developing a short bioinformatics training course

scientific article

The HMG-1 box protein family: classification and functional relationships.

scientific article

The Histone Database: a comprehensive resource for histones and histone fold-containing proteins

scientific article published in March 2006

The Histone Database: an integrated resource for histones and histone fold-containing proteins

scientific article

The Internet biologist

scientific article published on 01 August 1995

The Mediator co-activator complex regulates Ty1 retromobility by controlling the balance between Ty1i and Ty1 promoters

scientific article published on 20 February 2018

The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction.

scientific article

The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site

scientific article

The yeast nuclear gene suv3 affecting mitochondrial post-transcriptional processes encodes a putative ATP-dependent RNA helicase ⬇️

scientific article published on August 1, 1992

Threading analysis of prospero-type homeodomains.

scientific article published in January 1999

Towards BioDBcore: a community-defined information specification for biological databases

scientific article

Towards BioDBcore: a community-defined information specification for biological databases

scientific article (publication date: 2011)

Trajectories of microsecond molecular dynamics simulations of nucleosomes and nucleosome core particles.

scientific article published on 6 May 2016

Transcriptome annotation in the cloud: complexity, best practices, and cost

scientific article published on 29 January 2021

Transcriptomic analysis of Arabidopsis overexpressing flowering locus T driven by a meristem-specific promoter that induces early flowering

scientific article

Transposable elements donate lineage-specific regulatory sequences to host genomes

scientific article published on January 2005

Whole-Genome Sequence of Multidrug-Resistant Campylobacter coli Strain COL B1-266, Isolated from the Colombian Poultry Chain.

scientific article

Whole-Genome Sequences of Two Campylobacter coli Isolates from the Antimicrobial Resistance Monitoring Program in Colombia

scientific article

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