List of works - Ilene Karsch-Mizrachi

BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata

scientific article

COVID-19 pandemic reveals the peril of ignoring metadata standards

scientific article published on 19 June 2020

Comments on the paper by Pleijel et al. (2008): Vouching for GenBank

scientific article published on 4 May 2009

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

scientific article published in February 2018

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

article

Database resources of the National Center for Biotechnology Information

scientific article (published 2012-01-01)

Database resources of the National Center for Biotechnology Information

scientific article

Database resources of the National Center for Biotechnology Information

scientific article (published 2010-01-01)

Database resources of the National Center for Biotechnology Information

scientific article (publication date: 2009)

Database resources of the National Center for Biotechnology Information

Evidence standards in experimental and inferential INSDC Third Party Annotation data

scientific article

GenBank

scientific article (published in 2013)

GenBank

2008 scientific article

GenBank

scientific article (publication date: 2011)

GenBank

scientific article (published 2009-01-01)

GenBank

scientific article (publication date: 2005)

GenBank

scientific article (published 2006-01-01)

GenBank

2012 scientific article

GenBank

scientific article published on 01 January 2019

GenBank

scientific article published on 01 January 2002

GenBank

scientific article published on 01 January 2003

GenBank

scientific article published on 01 January 2007

GenBank

scientific article published on 12 November 2009

GenBank

scientific article published on 28 November 2016

GenBank

scientific article published on 01 January 2018

GenBank

scientific article published on 01 January 2020

GenBank

scientific article published on 16 November 2020

GenBank

GenBank.

scientific article

Genomic Standards Consortium Projects

article

Genomic standards consortium projects

scientific article

HIV Sequence Compendium 2018

article

In memoriam –Scott Federhen (October 21, 1952 - May 5, 2016).

scientific article

Managing Sequence Data

scientific article

Managing sequence data

scientific article published on 01 January 2008

Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.

scientific article

Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015).

scientific article published on 9 February 2016

Meeting report: the fifth Genomic Standards Consortium (GSC) workshop

scientific article published in June 2008

Minimum Information about an Uncultivated Virus Genome (MIUViG)

scientific article published on 17 December 2018

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

scientific article

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

scientific article

NCBI Taxonomy: a comprehensive update on curation, resources and tools

scientific article published on 13 July 2020

NCBI will no longer make taxonomy identifiers for individual influenza strains on January 15, 2018

Plant specimen contextual data consensus

scientific article

Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference

scientific article (publication date: 2012)

Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012

scientific article (publication date: 25 May 2012)

Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation

scientific article

Solving the Problem: Genome Annotation Standards before the Data Deluge

scientific article

Standardized metadata for human pathogen/vector genomic sequences

scientific article (publication date: 2014)

The Genomic Standards Consortium

scientific article (publication date: June 2011)

The International Nucleotide Sequence Database Collaboration

scientific article

The International Nucleotide Sequence Database Collaboration

scientific article (publication date: 2012)

The International Nucleotide Sequence Database Collaboration

scientific article (publication date: 2011)

The International Nucleotide Sequence Database Collaboration.

scientific article

The NCBI BioCollections Database

The NCBI BioCollections Database.

scientific article

The genomic standards consortium: bringing standards to life for microbial ecology

scientific article (publication date: October 2011)

The international nucleotide sequence database collaboration

scholarly article by Ilene Karsch-Mizrachi et al published 4 January 2018 in Nucleic Acids Research

The international nucleotide sequence database collaboration

scientific article published on 09 November 2020

The minimum information about a genome sequence (MIGS) specification

scientific article

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records

scientific article

Towards BioDBcore: a community-defined information specification for biological databases

scientific article

Towards BioDBcore: a community-defined information specification for biological databases

scientific article (publication date: 2011)

Using GenBank

scientific article published on 01 January 2016

VADR: validation and annotation of virus sequence submissions to GenBank

scientific article published on 23 November 2019

VADR: validation and annotation of virus sequence submissions to GenBank

scientific article published on 24 May 2020

VecScreen_plus_taxonomy: Imposing a Tax(onomy) Increase on Vector Contamination Screening

scientific article published on 23 October 2017

List of works by Ilene Karsch-Mizrachi

BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata

COVID-19 pandemic reveals the peril of ignoring metadata standards

Comments on the paper by Pleijel et al. (2008): Vouching for GenBank

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Database resources of the National Center for Biotechnology Information

Database resources of the National Center for Biotechnology Information

Database resources of the National Center for Biotechnology Information

Database resources of the National Center for Biotechnology Information

Database resources of the National Center for Biotechnology Information

Evidence standards in experimental and inferential INSDC Third Party Annotation data

GenBank

GenBank

GenBank

GenBank

GenBank

GenBank

GenBank

GenBank

GenBank

GenBank

GenBank

GenBank

GenBank

GenBank

GenBank

GenBank

GenBank

GenBank

GenBank

GenBank.

Genomic Standards Consortium Projects

Genomic standards consortium projects

HIV Sequence Compendium 2018

In memoriam –Scott Federhen (October 21, 1952 - May 5, 2016).

Managing Sequence Data

Managing sequence data

Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.

Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015).

Meeting report: the fifth Genomic Standards Consortium (GSC) workshop

Minimum Information about an Uncultivated Virus Genome (MIUViG)

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

NCBI Taxonomy: a comprehensive update on curation, resources and tools

NCBI will no longer make taxonomy identifiers for individual influenza strains on January 15, 2018

Plant specimen contextual data consensus

Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference

Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012

Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation

Solving the Problem: Genome Annotation Standards before the Data Deluge

Standardized metadata for human pathogen/vector genomic sequences

The Genomic Standards Consortium

The International Nucleotide Sequence Database Collaboration

The International Nucleotide Sequence Database Collaboration

The International Nucleotide Sequence Database Collaboration

The International Nucleotide Sequence Database Collaboration.

The NCBI BioCollections Database

The NCBI BioCollections Database.

The genomic standards consortium: bringing standards to life for microbial ecology

The international nucleotide sequence database collaboration

The international nucleotide sequence database collaboration

The minimum information about a genome sequence (MIGS) specification

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records

Towards BioDBcore: a community-defined information specification for biological databases

Towards BioDBcore: a community-defined information specification for biological databases

Using GenBank

VADR: validation and annotation of virus sequence submissions to GenBank

VADR: validation and annotation of virus sequence submissions to GenBank

VecScreen_plus_taxonomy: Imposing a Tax(onomy) Increase on Vector Contamination Screening