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List of works by Akhilesh Pandey

A Comparative Proteomic Analysis of Extracellular Vesicles Associated With Lipotoxicity

scientific article published on 04 November 2021

A comprehensive manually curated reaction map of RANKL/RANK-signaling pathway

scientific article

A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: identification of a novel protein, Frigg, as a protein kinase A substrate

scientific article (publication date: July 2002)

A mass spectrometry-based targeted assay for detection of SARS-CoV-2 antigen from clinical specimens

scientific article published on 03 July 2021

A novel Src homology 2 domain-containing molecule, Src-like adapter protein-2 (SLAP-2), which negatively regulates T cell receptor signaling

scientific article

A proteogenomic approach to map the proteome of an unsequenced pathogen – Leishmania donovani ⬇️

scientific article published on March 1, 2012

A proteomic analysis of human bile

scientific article

A proteomic approach for quantitation of phosphorylation using stable isotope labeling in cell culture

scientific article (publication date: 15 November 2003)

A reassessment of the translation initiation codon in vertebrates ⬇️

scientific article published on 01 December 2001

Absolute systems biology – measuring dynamics of protein modifications ⬇️

scientific article published on November 1, 2003

Accurate Precursor Mass Assignment Improves Peptide Identification in Data-Independent Acquisition Mass Spectrometry

scientific article published on 17 June 2019

An evaluation of human protein-protein interaction data in the public domain

scientific article

Analysis of Cellular Tyrosine Phosphorylation via Chemical Rescue of Conditionally Active Abl Kinase.

scientific article published on 17 January 2018

BioBuilder as a database development and functional annotation platform for proteins

scientific article

BioSITe: A Method for Direct Detection and Quantitation of Site-Specific Biotinylation

scientific article published on 18 December 2017

Center of Mass Calculation in Combination with MS/MS Allows Robust Identification of Single Amino Acid Polymorphisms in Clinical Measurements of Insulin-Like Growth Factor-1

scientific article published on 09 December 2019

Cloning and characterization of PAK5, a novel member of mammalian p21-activated kinase-II subfamily that is predominantly expressed in brain

scientific article (publication date: 30 May 2002)

Cloning of MASK, a novel member of the mammalian germinal center kinase III subfamily, with apoptosis-inducing properties

scientific article

Cloning of a novel signaling molecule, AMSH-2, that potentiates transforming growth factor beta signaling

scientific article

Comprehensive proteomic analysis of human bile ⬇️

scientific article published on November 4, 2011

Correction to: Quantitative phosphoproteomic analysis reveals reciprocal activation of receptor tyrosine kinases between cancer epithelial cells and stromal fibroblasts

scientific article published on 17 November 2018

DIA-Based Proteome Profiling of Nasopharyngeal Swabs from COVID-19 Patients

scientific article published on 22 July 2021

Development of human protein reference database as an initial platform for approaching systems biology in humans

scientific article (publication date: October 2003)

Developmental partitioning of SYK and ZAP70 prevents autoimmunity and cancer

scientific article published on 19 April 2021

Differences in signaling through the B-cell leukemia oncoprotein CRLF2 in response to TSLP and through mutant JAK2 ⬇️

scientific article published on August 20, 2012

GBA1 deficiency negatively affects physiological α-synuclein tetramers and related multimers

scientific article published on 8 January 2018

GPMAW – a software tool for analyzing proteins and peptides ⬇️

scientific article published on 01 November 2001

Genome annotation of Anopheles gambiae using mass spectrometry-derived data.

scientific article

H3K4me3 induces allosteric conformational changes in the DNA-binding and catalytic regions of the V(D)J recombinase

scientific article published on 07 February 2017

Histone demethylase JMJD2C is a coactivator for hypoxia-inducible factor 1 that is required for breast cancer progression ⬇️

scientific article published on November 5, 2012

Human protein reference database as a discovery resource for proteomics

scientific article

Human protein reference database--2006 update

scientific article

IL-11/IL11RA receptor mediated signaling: a web accessible knowledgebase ⬇️

scientific article published on April 30, 2013

Identification of GAPDH on the surface of Plasmodium sporozoites as a new candidate for targeting malaria liver invasion

scientific article (publication date: 19 September 2016)

Identification of Targets of c-Src Tyrosine Kinase by Chemical Complementation and Phosphoproteomics ⬇️

scientific article published on April 12, 2012

Identification of long-lived synaptic proteins by proteomic analysis of synaptosome protein turnover

scientific article published on 02 April 2018

Integrated genomic analysis reveals mutated ELF3 as a potential gallbladder cancer vaccine candidate

scientific article published on 24 August 2020

Integrative phosphoproteome and interactome analysis of the role of Ubash3b in BCR-ABL signaling

scientific article published on 09 August 2019

Is the Proteome of Bronchoalveolar Lavage Extracellular Vesicles a Marker of Advanced Lung Cancer?

scientific article published on 20 November 2020

K63-specific deubiquitination by two JAMM/MPN+ complexes: BRISC-associated Brcc36 and proteasomal Poh1

scientific article

Loss of C9orf72 Enhances Autophagic Activity via Deregulated mTOR and TFEB Signaling

scientific article

Molecular Characterization of Esophageal Squamous Cell Carcinoma Using Quantitative Proteomics

scientific article published on 23 June 2023

Monoclonal Antibody Cocktail as an Enrichment Tool for Acetylome Analysis ⬇️

scientific article published on April 14, 2011

Multiple pathways for Plasmodium ookinete invasion of the mosquito midgut

scientific article (publication date: 28 January 2014)

Mutant proteins as cancer-specific biomarkers

scientific article

NetPath: a public resource of curated signal transduction pathways

scientific article

ONCOMINE: a cancer microarray database and integrated data-mining platform

scientific article

Overlapping of MINK and CHRNE gene loci in the course of mammalian evolution

scientific article

PASS-DIA: A Data-Independent Acquisition Approach for Discovery Studies

scientific article published on 20 October 2020

PathBuilder--open source software for annotating and developing pathway resources

scientific article

Phosphotyrosine profiling of human cerebrospinal fluid

scientific article published on 12 September 2018

Proteomic Analysis of Plasmodium Merosomes: The Link between Liver and Blood Stages in Malaria

scientific article published on 23 July 2019

Proteomic Signature of Host Response to SARS-CoV-2 Infection in the Nasopharynx

scientific article published on 14 August 2021

Proteomic analysis of an unsequenced plant — Mangifera indica ⬇️

scientific article published on August 10, 2012

Proteomic characterization of Her2/neu‐overexpressing breast cancer cells ⬇️

scientific article published on November 1, 2010

Pyruvate kinase M2 is a PHD3-stimulated coactivator for hypoxia-inducible factor 1

scientific article

Quantitative Proteomic Profiling of Cerebrospinal Fluid to Identify Candidate Biomarkers for Alzheimer's Disease

scientific article published on 25 January 2019

Quantitative Proteomics Reveals that the OGT Interactome Is Remodeled in Response to Oxidative Stress

scientific article published on 12 March 2021

Quantitative phosphoproteomic analysis reveals reciprocal activation of receptor tyrosine kinases between cancer epithelial cells and stromal fibroblasts.

scientific article

Quantitative temporal proteomic analysis of human embryonic stem cell differentiation into oligodendrocyte progenitor cells ⬇️

scientific article published on 02 September 2011

Quantitative tissue proteomics of esophageal squamous cell carcinoma for novel biomarker discovery ⬇️

scientific article published on September 15, 2011

Ribosomal protein s15 phosphorylation mediates LRRK2 neurodegeneration in Parkinson's disease

scientific article

Secretome analysis of the fungus Trichoderma harzianum grown on cellulose ⬇️

scientific article published on August 1, 2012

Signaling network of Oncostatin M pathway ⬇️

scientific article published on December 20, 2012

Signature Fragment Ions of Biotinylated Peptides

scientific article published on 13 January 2020

Src-like adaptor protein (Slap) is a negative regulator of mitogenesis ⬇️

scientific article published on August 27, 1998

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

scientific article (publication date: May 2002)

Systematic evaluation of alternating CID and ETD fragmentation for phosphorylated peptides ⬇️

scientific article published on May 20, 2011

TMT-Based Multiplexed Quantitation of <i>N</i>-Glycopeptides Reveals Glycoproteome Remodeling Induced by Oncogenic Mutations

scientific article published on 25 March 2022

TSLP Signaling Network Revealed by SILAC-Based Phosphoproteomics ⬇️

scientific article published on February 16, 2012

Tackling the phosphoproteome: tools and strategies

scientific article (publication date: February 2003)

Targeted Detection of SARS-CoV-2 Nucleocapsid Sequence Variants by Mass Spectrometric Analysis of Tryptic Peptides

scientific article published on 15 November 2021

The BioPAX community standard for pathway data sharing

scientific article (publication date: September 2010)

The Ret Receptor Protein Tyrosine Kinase Associates with the SH2-containing Adapter Protein Grb10 ⬇️

scientific article published on September 15, 1995

The dynamic stress-induced “O-GlcNAc-ome” highlights functions for O-GlcNAc in regulating DNA damage/repair and other cellular pathways ⬇️

scientific article published on July 31, 2010

The keratoconus corneal proteome: Loss of epithelial integrity and stromal degeneration ⬇️

scientific article published on May 29, 2013

Tissue matrix arrays for high-throughput screening and systems analysis of cell function

scientific article

Toward the human cellular microRNAome.

scientific article published on 6 September 2017

Transcriptomic Profiling of Medial Temporal Lobe Epilepsy ⬇️

scientific article published on January 30, 2012

Transcriptomic and proteomic profiling of KEAP1 disrupted and sulforaphane-treated human breast epithelial cells reveals common expression profiles ⬇️

scientific article published on May 20, 2011

Tyrosine phosphorylation mapping of the epidermal growth factor receptor signaling pathway

scientific article (publication date: 11 January 2002)

Ubiquilin 2 modulates ALS/FTD-linked FUS-RNA complex dynamics and stress granule formation

scientific article published on 15 November 2018

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