Search filters

List of works by Adam Frankish

Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome

scientific article

Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes

scientific article

Comparative analysis of pseudogenes across three phyla

scientific article

Comparative analysis of the transcriptome across distant species

scientific article

Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function

scientific article

Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction

scientific article published on 18 June 2015

Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation

scientific article

Current status and new features of the Consensus Coding Sequence database

scientific article

Defining the human reference protein-coding gene set.

scientific article published on 11 October 2010

Determination and validation of principal gene products.

scientific article

Efficient targeted transcript discovery via array-based normalization of RACE libraries

scientific article

Ensembl 2018.

scientific article published on 16 November 2017

Ensembl 2019

scientific article published on 01 January 2019

Ensembl 2020

scientific article published on 01 January 2020

Ensembl 2021

scientific article published on 02 November 2020

Ensembl 2022

scientific article published on 19 October 2021

Evidence for transcript networks composed of chimeric RNAs in human cells

scientific article

From identification to validation to gene count.

scientific article

Functional transcriptomics in the post-ENCODE era

scientific article published on 30 October 2013

GENCODE pseudogenes

scientific article published in January 2014

GENCODE reference annotation for the human and mouse genomes

scientific article published on 01 January 2019

GENCODE: producing a reference annotation for ENCODE

scientific article

GENCODE: the reference human genome annotation for The ENCODE Project

scientific article

Gene inactivation and its implications for annotation in the era of personal genomics

scientific article (publication date: 2011)

Genome annotation for clinical genomic diagnostics: strengths and weaknesses

scientific article

High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing

scientific article

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates

scientific article

Multiple evidence strands suggest that there may be as few as 19,000 human protein-coding genes

scientific article (publication date: 15 November 2014)

Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment

scientific article published on 7 August 2006

Polymorphic segmental duplications at 8p23.1 challenge the determination of individual defensin gene repertoires and the assembly of a contiguous human reference sequence

scientific article

Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions

scientific article

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

scientific article

Pseudogenes in the mouse lineage: transcriptional activity and strain-specific history

Quantifying the mechanisms of domain gain in animal proteins

scientific article

RNAcentral: a hub of information for non-coding RNA sequences

scientific article published on 5 November 2018

RNAcentral: a hub of information for non-coding RNA sequences

scholarly article published in Nucleic Acids Research

Re-annotation of 191 developmental and epileptic encephalopathy-associated genes unmasks de novo variants in SCN1A

scientific article published on 02 December 2019

Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome

scientific article

The DNA sequence of the human X chromosome

scientific article published on 17 March 2005

The GENCODE pseudogene resource

scientific article

The Vertebrate Genome Annotation browser 10 years on

scientific article

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

scientific article

The implications of alternative splicing in the ENCODE protein complement

scientific article (publication date: 27 March 2007)

The importance of identifying alternative splicing in vertebrate genome annotation

scientific article

The origins, evolution, and functional potential of alternative splicing in vertebrates

scientific article

The shrinking human protein coding complement: are there fewer than 20,000 genes?

article

Towards a complete map of the human long non-coding RNA transcriptome

scientific article published on 01 September 2018

Tracking and coordinating an international curation effort for the CCDS Project

scientific article

Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene

scientific article

Validation of mRNA/EST-based gene predictions in human Xp11.4 revealed differences to the organization of the orthologous mouse locus

scientific article published on 8 December 2005

Paulina is supported by:

About Paulina

Help