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List of works by Stefan Jakobs

1.8 A bright-state structure of the reversibly switchable fluorescent protein Dronpa guides the generation of fast switching variants

scientific article

4Pi microscopy of quantum dot-labeled cellular structures

scientific article published on 7 September 2006

4Pi-confocal microscopy of live cells

scientific article

A MICOS-TIM22 Association Promotes Carrier Import into Human Mitochondria

scientific article published on 16 May 2019

A reversibly photoswitchable GFP-like protein with fluorescence excitation decoupled from switching

scientific article

Aberration-corrected cryoimmersion light microscopy

scientific article published on 22 January 2018

Absolute quantum yield measurements of fluorescent proteins using a plasmonic nanocavity

scientific article published on 30 October 2020

Achromatic light patterning and improved image reconstruction for parallelized RESOLFT nanoscopy

scientific article published on 20 March 2017

Bax assembles into large ring-like structures remodeling the mitochondrial outer membrane in apoptosis

scientific article published on 18 January 2016

Breaking the diffraction barrier in fluorescence microscopy at low light intensities by using reversibly photoswitchable proteins

scientific article published on 28 November 2005

CRISPR/Cas9-mediated endogenous protein tagging for RESOLFT super-resolution microscopy of living human cells

scientific article

Chromophore twisting in the excited state of a photoswitchable fluorescent protein captured by time-resolved serial femtosecond crystallography

scientific article published on 11 September 2017

Comment on "Extended-resolution structured illumination imaging of endocytic and cytoskeletal dynamics".

scientific article

Concepts for nanoscale resolution in fluorescence microscopy

scientific article published in October 2004

Cooperative 4Pi excitation and detection yields sevenfold sharper optical sections in live-cell microscopy

scientific article

Coordinate-Targeted and Coordinate-Stochastic Super-Resolution Microscopy with the Reversibly Switchable Fluorescent Protein Dreiklang

Coordinate-targeted fluorescence nanoscopy with multiple off states

Correlative cryo super-resolution light and electron microscopy on mammalian cells using fluorescent proteins

scientific article published in Scientific Reports

Cross-strand binding of TFAM to a single mtDNA molecule forms the mitochondrial nucleoid

scientific article published on 24 August 2015

Cyclin-dependent kinase 5 is an upstream regulator of mitochondrial fission during neuronal apoptosis

scientific article published on 12 January 2007

Differential protein distributions define two sub-compartments of the mitochondrial inner membrane in yeast

scientific article

Diffraction-unlimited all-optical imaging and writing with a photochromic GFP.

scientific article published on 11 September 2011

Dual-label STED nanoscopy of living cells using photochromism

scientific article published on 8 August 2011

EFGP and DsRed expressing cultures of Escherichia coli imaged by confocal, two-photon and fluorescence lifetime microscopy

scientific article published on August 2000

Expression-Enhanced Fluorescent Proteins Based on Enhanced Green Fluorescent Protein for Super-resolution Microscopy

scientific article

Far-Field Autofluorescence Nanoscopy

Fast 100-nm resolution three-dimensional microscope reveals structural plasticity of mitochondria in live yeast

scientific article

Fis1p and Caf4p, but not Mdv1p, determine the polar localization of Dnm1p clusters on the mitochondrial surface

scientific article published on 11 July 2006

Fluorescence microscopy with diffraction resolution barrier broken by stimulated emission

scientific article (publication date: 18 July 2000)

Fluorescence nanoscopy by ground-state depletion and single-molecule return

scientific article

Fluorescence nanoscopy in cell biology

scientific article published on 6 September 2017

Fluorescence nanoscopy in whole cells by asynchronous localization of photoswitching emitters

scientific article

Generation of monomeric reversibly switchable red fluorescent proteins for far-field fluorescence nanoscopy

scientific article published on 25 July 2008

High resolution imaging of live mitochondria

scientific article

Imaging and writing at the nanoscale with focused visible light through saturable optical transitions

article

Immunofluorescence stimulated emission depletion microscopy

In vivo super-resolution RESOLFT microscopy of Drosophila melanogaster

scientific article published on 29 June 2016

Kinetic coupling of the respiratory chain with ATP synthase, but not proton gradients, drives ATP production in cristae membranes

scientific article published on 21 January 2020

Light microscopic analysis of mitochondrial heterogeneity in cell populations and within single cells

scientific article

Live-cell RESOLFT nanoscopy of transgenic Arabidopsis thaliana

scientific article published on 03 September 2020

Live-cell STED nanoscopy of mitochondrial cristae

scientific article published on 27 August 2019

Live-cell multiplane three-dimensional super-resolution optical fluctuation imaging

scientific article

MICOS assembly controls mitochondrial inner membrane remodeling and crista junction redistribution to mediate cristae formation

scientific article published on 22 June 2020

MINOS1 is a conserved component of mitofilin complexes and required for mitochondrial function and cristae organization

scientific article

MITRAC7 Acts as a COX1-Specific Chaperone and Reveals a Checkpoint during Cytochrome c Oxidase Assembly

scientific journal article

Mapping protein interactions in the active TOM-TIM23 supercomplex

scientific article published on 29 September 2021

Mdm31 and Mdm32 are inner membrane proteins required for maintenance of mitochondrial shape and stability of mitochondrial DNA nucleoids in yeast

scientific article

Mic10 oligomerizes to bend mitochondrial inner membranes at cristae junctions

scientific article

Mic60 exhibits a coordinated clustered distribution along and across yeast and mammalian mitochondria

scientific article published on 26 April 2019

Mitochondrial cristae revealed with focused light

scientific article

Mitochondrial fusion is required for regulation of mitochondrial DNA replication

scientific article published on 06 June 2019

Molecular Basis of the Light-driven Switching of the Photochromic Fluorescent Protein Padron

scientific article

Molecular contribution function in RESOLFT nanoscopy

scientific article published on 01 July 2019

Multicolor 3D MINFLUX nanoscopy of mitochondrial MICOS proteins

scientific article published on 11 August 2020

Multicolor fluorescence nanoscopy in fixed and living cells by exciting conventional fluorophores with a single wavelength

scientific article

Nanoscale distribution of mitochondrial import receptor Tom20 is adjusted to cellular conditions and exhibits an inner-cellular gradient

scientific article

Nanoscale resolution in GFP-based microscopy

scientific article published on September 2006

Nanoscale separation of molecular species based on their rotational mobility

article

Nanoscopy of living brain slices with low light levels

scientific article published on September 2012

Nanoscopy with more than 100,000 'doughnuts'.

scientific article published on 7 July 2013

Near-infrared STED nanoscopy with an engineered bacterial phytochrome

scientific article published in Nature Communications

New fluorinated rhodamines for optical microscopy and nanoscopy

scientific article published on 22 March 2010

Optimal precision and accuracy in 4Pi-STORM using dynamic spline PSF models

scientific article published in 2022

Organization of Mitochondrial Gene Expression in Two Distinct Ribosome-Containing Assemblies

scientific article

Photoconversion of matrix targeted GFP enables analysis of continuity and intermixing of the mitochondrial lumen ⬇️

scientific article published on November 6, 2003

Photoswitchable fluorescent proteins enable monochromatic multilabel imaging and dual color fluorescence nanoscopy

scientific article

Photoswitching mechanism of a fluorescent protein revealed by time-resolved crystallography and transient absorption spectroscopy

scientific article published on 06 February 2020

Primary light-induced reaction steps of reversibly photoswitchable fluorescent protein Padron0.9 investigated by femtosecond spectroscopy

scientific article

RESOLFT Nanoscopy of Fixed Cells Using a Z-Domain Based Fusion Protein for Labelling

scientific article

ROMO1 is a constituent of the human presequence translocase required for YME1L protease import

scientific article published on 31 December 2018

Rapid FlAsH labelling in the budding yeast Saccharomyces cerevisiae

scientific article published on October 2010

Rcf1 mediates cytochrome oxidase assembly and respirasome formation, revealing heterogeneity of the enzyme complex

scientific article

Recycling, clustering, and endocytosis jointly maintain PIN auxin carrier polarity at the plasma membrane

scientific article

Red-emitting rhodamines with hydroxylated, sulfonated, and phosphorylated dye residues and their use in fluorescence nanoscopy

scientific article published on 11 September 2012

Reversible photoswitching enables single-molecule fluorescence fluctuation spectroscopy at high molecular concentration

scientific article published in December 2007

Rhodamines NN: A Novel Class of Caged Fluorescent Dyes

scholarly article by Vladimir N. Belov et al published 9 April 2010 in Angewandte Chemie International Edition

SNAP-, CLIP- and Halo-tag labelling of budding yeast cells

scientific article

STED super-resolution microscopy of clinical paraffin-embedded human rectal cancer tissue

scientific article

STED super-resolution microscopy reveals an array of MINOS clusters along human mitochondria

scientific article published on 15 May 2013

Sample preparation for STED microscopy

scientific article

Short tetracysteine tags to beta-tubulin demonstrate the significance of small labels for live cell imaging

scientific article published on 6 October 2004

Spatial and temporal dynamics of budding yeast mitochondria lacking the division component Fis1p

scientific article published in April 2003

Spatial orchestration of mitochondrial translation and OXPHOS complex assembly.

scientific article published on 16 April 2018

Spherical nanosized focal spot unravels the interior of cells

scientific article

Stimulated emission depletion nanoscopy of living cells using SNAP-tag fusion proteins

scientific article

Structural basis for reversible photoswitching in Dronpa

scientific article

Structural insights into crista junction formation by the Mic60-Mic19 complex

scientific article published in 2022

Structure and mechanism of the reversible photoswitch of a fluorescent protein

scientific article

Super-resolution microscopy of mitochondria

scientific article published on 25 April 2014

Super-resolution microscopy reveals that mammalian mitochondrial nucleoids have a uniform size and frequently contain a single copy of mtDNA.

scientific article

TIM29 is a subunit of the human carrier translocase required for protein transport

scientific journal article

The 2015 super-resolution microscopy roadmap

The MICOS component Mic60 displays a conserved membrane-bending activity that is necessary for normal cristae morphology

scientific article published on 2 March 2017

The Oxidation Status of Mic19 Regulates MICOS Assembly

scientific article

The class V myosin motor protein, Myo2, plays a major role in mitochondrial motility in Saccharomyces cerevisiae

scientific article published in April 2008

The inner membrane protein Mdm33 controls mitochondrial morphology in yeast

scientific article

The inner-mitochondrial distribution of Oxa1 depends on the growth conditions and on the availability of substrates

scientific article

The m-AAA protease processes cytochrome c peroxidase preferentially at the inner boundary membrane of mitochondria

scientific article

Two-Color 810 nm STED Nanoscopy of Living Cells with Endogenous SNAP-Tagged Fusion Proteins

scientific article

Two-color RESOLFT nanoscopy with green and red fluorescent photochromic proteins

scientific article published on 21 January 2014

Two-color STED microscopy reveals different degrees of colocalization between hexokinase-I and the three human VDAC isoforms

scientific article published on 5 March 2010

Two-color far-field fluorescence nanoscopy

scientific article published on 16 February 2007

Two-color far-field fluorescence nanoscopy based on photoswitchable emitters

article by H. Bock et al published July 2007 in Applied Physics B

Ultrafast dynamics microscopy

article

Uniform nomenclature for the mitochondrial contact site and cristae organizing system

scientific article published on March 2014

Wide-field subdiffraction RESOLFT microscopy using fluorescent protein photoswitching

scientific article published in March 2007

rsEGFP2 enables fast RESOLFT nanoscopy of living cells

scientific article

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