List of works - Jon Teague

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.

scientific article

A comprehensive catalogue of somatic mutations from a human cancer genome

scientific article

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

A hypermutation phenotype and somatic MSH6 mutations in recurrent human malignant gliomas after alkylator chemotherapy

scientific article

A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer

scientific article published on 22 May 2005

A small-cell lung cancer genome with complex signatures of tobacco exposure

scientific article

A survey of homozygous deletions in human cancer genomes

scientific article

A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation

scientific article

Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue

scientific article

Analysis of the genomic landscape of multiple myeloma highlights novel prognostic markers and disease subgroups

scientific article published on 6 December 2017

Analysis of the genomic landscape of multiple myeloma highlights novel prognostic markers and disease subgroups.

scientific article published on 22 May 2018

Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences

scientific article published on 01 February 2019

AutoCSA, an algorithm for high throughput DNA sequence variant detection in cancer genomes

scientific article published on 7 May 2007

BioMart Central Portal: an open database network for the biological community

scientific article

COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer

scientific article

COSMIC 2005

scientific article

COSMIC: exploring the world's knowledge of somatic mutations in human cancer

scientific article (publication date: 2015)

COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer

scientific article

COSMIC: the catalogue of somatic mutations in cancer.

scientific article published on 19 September 2011

Characterizing Mutational Signatures in Human Cancer Cell Lines Reveals Episodic APOBEC Mutagenesis

Classification and Personalized Prognosis in Myeloproliferative Neoplasms

article

Clinical and biological implications of driver mutations in myelodysplastic syndromes

scientific article published on 12 September 2013

Complex landscapes of somatic rearrangement in human breast cancer genomes

scientific article

Corrigendum: Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma

scientific article published in Nature

Data mining using the Catalogue of Somatic Mutations in Cancer BioMart

scientific article

Distinct H3F3A and H3F3B driver mutations define chondroblastoma and giant cell tumor of bone

scientific article

Erratum: Corrigendum: Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue

scholarly article by Colin S Cooper et al published June 2015 in Nature Genetics

Erratum: Corrigendum: Distinct H3F3A and H3F3B driver mutations define chondroblastoma and giant cell tumor of bone

scholarly article published in Nature Genetics

Erratum: Corrigendum: Mutations in FRMD7, a newly identified member of the FERM family, cause X-linked idiopathic congenital nystagmus

scholarly article published in Nature Genetics

Erratum: Corrigendum: Signatures of mutational processes in human cancer

scientific article published in Nature

Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma

scientific article

Frequent mutation of the major cartilage collagen gene COL2A1 in chondrosarcoma

scientific article published on 16 June 2013

Genomic Classification and Prognosis in Acute Myeloid Leukemia

scientific article

Heterogeneity of genomic evolution and mutational profiles in multiple myeloma

scientific article published on January 2014

High throughput DNA sequence variant detection by conformation sensitive capillary electrophoresis and automated peak comparison

scientific article

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

scientific article

International network of cancer genome projects

scientific article

Landscape of somatic mutations in 560 breast cancer whole-genome sequences

scientific article

Lung cancer: intragenic ERBB2 kinase mutations in tumours

scientific article

Massive genomic rearrangement acquired in a single catastrophic event during cancer development

scientific article

Mining cancer genomes in COSMIC.

scientific article published in October 2012

Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes

scientific article

Mutation analysis of 24 known cancer genes in the NCI-60 cell line set.

scientific article

Mutational processes molding the genomes of 21 breast cancers

scientific article

Mutational signatures of ionizing radiation in second malignancies

scientific article

Mutations in CUL4B, which encodes a ubiquitin E3 ligase subunit, cause an X-linked mental retardation syndrome associated with aggressive outbursts, seizures, relative macrocephaly, central obesity, hypogonadism, pes cavus, and tremor

scientific article

Mutations in FRMD7, a newly identified member of the FERM family, cause X-linked idiopathic congenital nystagmus

scientific article

Mutations in ZDHHC9, which encodes a palmitoyltransferase of NRAS and HRAS, cause X-linked mental retardation associated with a Marfanoid habitus

scientific article

Mutations in the BRWD3 gene cause X-linked mental retardation associated with macrocephaly

scientific article

Mutations in the DLG3 gene cause nonsyndromic X-linked mental retardation

scientific article

Mutations in the RSK2(RPS6KA3) gene cause Coffin-Lowry syndrome and nonsyndromic X-linked mental retardation

scientific article

Mutations in the gene encoding the Sigma 2 subunit of the adaptor protein 1 complex, AP1S2, cause X-linked mental retardation

scientific article

Mutations of the BRAF gene in human cancer

scientific article (publication date: 27 June 2002)

Oligosaccharyltransferase-subunit mutations in nonsyndromic mental retardation

scientific article

Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer

scientific article

Patterns of somatic mutation in human cancer genomes

scientific article (publication date: 8 March 2007)

Planning the human variome project: the Spain report.

scientific article published in April 2009

Polygenic in vivo validation of cancer mutations using transposons

scientific article

Processed pseudogenes acquired somatically during cancer development

scientific article published on 09 April 2014

RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia

scientific article

Recurrent PTPRB and PLCG1 mutations in angiosarcoma

scientific article

Recurrent mutation of IGF signalling genes and distinct patterns of genomic rearrangement in osteosarcoma

scientific article

SLC9A6 mutations cause X-linked mental retardation, microcephaly, epilepsy, and ataxia, a phenotype mimicking Angelman syndrome

scientific article published on 13 March 2008

Sequence analysis of the protein kinase gene family in human testicular germ-cell tumors of adolescents and adults

scientific article

Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets

scientific article published on 16 April 2018

Signatures of mutational processes in human cancer

scientific article (publication date: 22 August 2013)

Single-cell paired-end genome sequencing reveals structural variation per cell cycle

scientific article

Somatic SF3B1 mutation in myelodysplasia with ring sideroblasts

scientific article

Somatic mutation databases as tools for molecular epidemiology and molecular pathology of cancer: proposed guidelines for improving data collection, distribution, and integration

scientific article

Somatic mutations of the histone H3K27 demethylase gene UTX in human cancer

scientific article

Somatic mutations of the protein kinase gene family in human lung cancer

scientific article published on September 2005

Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes

scientific article

Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes

scientific article

The BioMart community portal: an innovative alternative to large, centralized data repositories

scientific article (publication date: July 2015)

The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website

scientific article

The Catalogue of Somatic Mutations in Cancer (COSMIC)

scientific article

The Life History of 21 Breast Cancers

The driver landscape of sporadic chordoma

scientific article published on 12 October 2017

The genetic heterogeneity and mutational burden of engineered melanomas in zebrafish models

scientific article published on January 2013

The landscape of cancer genes and mutational processes in breast cancer

scientific article (publication date: 16 May 2012)

The life history of 21 breast cancers

scientific article (publication date: 25 May 2012)

The original Lujan syndrome family has a novel missense mutation (p.N1007S) in the MED12 gene

scientific article published on 16 March 2007

The patterns and dynamics of genomic instability in metastatic pancreatic cancer

scientific article (publication date: 28 October 2010)

Timing the Landmark Events in the Evolution of Clear Cell Renal Cell Cancer: TRACERx Renal

scientific article published on 4 April 2018

VAGrENT: Variation Annotation Generator

scientific article published on 17 December 2015

Whole exome sequencing of adenoid cystic carcinoma

scientific article published on 17 June 2013

ascatNgs: Identifying Somatically Acquired Copy-Number Alterations from Whole-Genome Sequencing Data

scientific article

cgpCaVEManWrapper: Simple Execution of CaVEMan in Order to Detect Somatic Single Nucleotide Variants in NGS Data

scientific article

cgpPindel: Identifying Somatically Acquired Insertion and Deletion Events from Paired End Sequencing

scientific article published on 17 December 2015

List of works by Jon Teague

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.

A comprehensive catalogue of somatic mutations from a human cancer genome

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

A hypermutation phenotype and somatic MSH6 mutations in recurrent human malignant gliomas after alkylator chemotherapy

A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer

A small-cell lung cancer genome with complex signatures of tobacco exposure

A survey of homozygous deletions in human cancer genomes

A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation

Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue

Analysis of the genomic landscape of multiple myeloma highlights novel prognostic markers and disease subgroups

Analysis of the genomic landscape of multiple myeloma highlights novel prognostic markers and disease subgroups.

Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences

AutoCSA, an algorithm for high throughput DNA sequence variant detection in cancer genomes

BioMart Central Portal: an open database network for the biological community

COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer

COSMIC 2005

COSMIC: exploring the world's knowledge of somatic mutations in human cancer

COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer

COSMIC: the catalogue of somatic mutations in cancer.

Characterizing Mutational Signatures in Human Cancer Cell Lines Reveals Episodic APOBEC Mutagenesis

Classification and Personalized Prognosis in Myeloproliferative Neoplasms

Clinical and biological implications of driver mutations in myelodysplastic syndromes

Complex landscapes of somatic rearrangement in human breast cancer genomes

Corrigendum: Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma

Data mining using the Catalogue of Somatic Mutations in Cancer BioMart

Distinct H3F3A and H3F3B driver mutations define chondroblastoma and giant cell tumor of bone

Erratum: Corrigendum: Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue

Erratum: Corrigendum: Distinct H3F3A and H3F3B driver mutations define chondroblastoma and giant cell tumor of bone

Erratum: Corrigendum: Mutations in FRMD7, a newly identified member of the FERM family, cause X-linked idiopathic congenital nystagmus

Erratum: Corrigendum: Signatures of mutational processes in human cancer

Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma

Frequent mutation of the major cartilage collagen gene COL2A1 in chondrosarcoma

Genomic Classification and Prognosis in Acute Myeloid Leukemia

Heterogeneity of genomic evolution and mutational profiles in multiple myeloma

High throughput DNA sequence variant detection by conformation sensitive capillary electrophoresis and automated peak comparison

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

International network of cancer genome projects

Landscape of somatic mutations in 560 breast cancer whole-genome sequences

Lung cancer: intragenic ERBB2 kinase mutations in tumours

Massive genomic rearrangement acquired in a single catastrophic event during cancer development

Mining cancer genomes in COSMIC.

Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes

Mutation analysis of 24 known cancer genes in the NCI-60 cell line set.

Mutational processes molding the genomes of 21 breast cancers

Mutational signatures of ionizing radiation in second malignancies

Mutations in CUL4B, which encodes a ubiquitin E3 ligase subunit, cause an X-linked mental retardation syndrome associated with aggressive outbursts, seizures, relative macrocephaly, central obesity, hypogonadism, pes cavus, and tremor

Mutations in FRMD7, a newly identified member of the FERM family, cause X-linked idiopathic congenital nystagmus

Mutations in ZDHHC9, which encodes a palmitoyltransferase of NRAS and HRAS, cause X-linked mental retardation associated with a Marfanoid habitus

Mutations in the BRWD3 gene cause X-linked mental retardation associated with macrocephaly

Mutations in the DLG3 gene cause nonsyndromic X-linked mental retardation

Mutations in the RSK2(RPS6KA3) gene cause Coffin-Lowry syndrome and nonsyndromic X-linked mental retardation

Mutations in the gene encoding the Sigma 2 subunit of the adaptor protein 1 complex, AP1S2, cause X-linked mental retardation

Mutations of the BRAF gene in human cancer

Oligosaccharyltransferase-subunit mutations in nonsyndromic mental retardation

Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer

Patterns of somatic mutation in human cancer genomes

Planning the human variome project: the Spain report.

Polygenic in vivo validation of cancer mutations using transposons

Processed pseudogenes acquired somatically during cancer development

RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia

Recurrent PTPRB and PLCG1 mutations in angiosarcoma

Recurrent mutation of IGF signalling genes and distinct patterns of genomic rearrangement in osteosarcoma

SLC9A6 mutations cause X-linked mental retardation, microcephaly, epilepsy, and ataxia, a phenotype mimicking Angelman syndrome

Sequence analysis of the protein kinase gene family in human testicular germ-cell tumors of adolescents and adults

Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets

Signatures of mutational processes in human cancer

Single-cell paired-end genome sequencing reveals structural variation per cell cycle

Somatic SF3B1 mutation in myelodysplasia with ring sideroblasts

Somatic mutation databases as tools for molecular epidemiology and molecular pathology of cancer: proposed guidelines for improving data collection, distribution, and integration

Somatic mutations of the histone H3K27 demethylase gene UTX in human cancer

Somatic mutations of the protein kinase gene family in human lung cancer

Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes

Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes

The BioMart community portal: an innovative alternative to large, centralized data repositories

The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website

The Catalogue of Somatic Mutations in Cancer (COSMIC)

The Life History of 21 Breast Cancers

The driver landscape of sporadic chordoma

The genetic heterogeneity and mutational burden of engineered melanomas in zebrafish models