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List of works by Simonetta Gribaldo

A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya

scientific article

A genomic survey of Reb homologs suggests widespread occurrence of R-bodies in proteobacteria.

scientific article

A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes

scientific article

A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to land

scientific article (publication date: 16 February 2009)

An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences

scientific article

An rpoB signature sequence provides unique resolution for the molecular typing of cyanobacteria

scientific article

Ancient phylogenetic relationships

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Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox

scientific article

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

scientific article

Bacteria with a eukaryotic touch: a glimpse of ancient evolution?

scientific article

Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires' disease

scientific article

Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine

scientific article

Crenarchaeal CdvA forms double-helical filaments containing DNA and interacts with ESCRT-III-like CdvB

scientific article

Diversity of virus-host systems in hypersaline Lake Retba, Senegal

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Eukaryotic origins: How and when was the mitochondrion acquired?

scientific article

Evidence for a Xer/dif system for chromosome resolution in archaea

scientific article

Evolutionary history of carbon monoxide dehydrogenase/acetyl-CoA synthase, one of the oldest enzymatic complexes

scientific article published on 22 January 2018

Functional divergence prediction from evolutionary analysis: a case study of vertebrate hemoglobin

scientific article published on 27 June 2003

Genome sequence of "Candidatus Methanomethylophilus alvus" Mx1201, a methanogenic archaeon from the human gut belonging to a seventh order of methanogens

scientific article published on December 2012

Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi

scientific article

Geographic structuring of the Plasmodium falciparum sarco(endo)plasmic reticulum Ca2+ ATPase (PfSERCA) gene diversity

scientific article

Global phylogenomic analysis disentangles the complex evolutionary history of DNA replication in archaea

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Happy together: genomic insights into the unique Nanoarchaeum/Ignicoccus association

scientific article (publication date: 2009)

Heterotachy and functional shift in protein evolution

scientific article

Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium

scientific article (publication date: 5 June 2008)

Identification, purification, and characterization of an eukaryotic-like phosphopantetheine adenylyltransferase (coenzyme A biosynthetic pathway) in the hyperthermophilic archaeon Pyrococcus abyssi.

scientific article

Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

scientific article (publication date: March 2008)

Methanogenesis and the Wood-Ljungdahl Pathway: An Ancient, Versatile, and Fragile Association

scientific article

Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales?

scientific article published on 14 April 2005

Origin and evolution of DNA topoisomerases

scientific article published on 4 January 2007

Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome

scientific article

Paenibacillus faecis sp. nov., isolated from human faeces

scientific article

Phylogenetic and Functional Analysis of Aspergillus fumigatus MGTC, a Fungal Protein Homologous to a Bacterial Virulence Factor ⬇️

scientific article published on May 20, 2011

Phylogenomics of sterol synthesis: insights into the origin, evolution, and diversity of a key eukaryotic feature

scientific article

Phylogenomics of the archaeal flagellum: rare horizontal gene transfer in a unique motility structure

scientific article

Phylogeny and evolution of the Archaea: one hundred genomes later ⬇️

scientific article published on June 1, 2011

Phylogeny of prokaryotes: does it exist and why should we care?

scientific article published on 23 July 2009

Ribonucleotide reduction - horizontal transfer of a required function spans all three domains

scientific article

S-layers at second glance? Altiarchaeal grappling hooks (hami) resemble archaeal S-layer proteins in structure and sequence

scientific article published on 9 June 2015

Taxonomic and functional prokaryote diversity in mildly arsenic-contaminated sediments

scientific article

The Flagellar Arginine Kinase in Trypanosoma brucei Is Important for Infection in Tsetse Flies

scientific article published on 28 July 2015

The changing view of eukaryogenesis - fossils, cells, lineages and how they all come together

scientific article

The genome reduction hypothesis and the phylogeny of eukaryotes

scientific article published on December 2003

The growing tree of Archaea: new perspectives on their diversity, evolution and ecology

scientific article published on 04 August 2017

The origin and evolution of Archaea: a state of the art

scientific article

The origin of modern terrestrial life

scientific article (publication date: September 2007)

The two-domain tree of life is linked to a new root for the Archaea

scientific article published on 11 May 2015

Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees

scientific article

Transcriptional Analysis and Subcellular Protein Localization Reveal Specific Features of the Essential WalKR System in Staphylococcus aureus

scientific article

Unique characteristics of the pyrrolysine system in the 7th order of methanogens: implications for the evolution of a genetic code expansion cassette

scientific article published on 27 January 2014

Updating carbamoylphosphate synthase (CPS) phylogenies: occurrence and phylogenetic identity of archaeal CPS genes

scientific article published on August 2002

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