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List of works by Jean-Michel Claverie

"Hidden" dUTPase sequence in human immunodeficiency virus type 1 gp120

scientific article published on January 1999

A Putative Role of de-Mono-ADP-Ribosylation of STAT1 by the SARS-CoV-2 Nsp3 Protein in the Cytokine Storm Syndrome of COVID-19

scientific article published on 15 June 2020

A Puzzling Anomaly in the 4-Mer Composition of the Giant Pandoravirus Genomes Reveals a Stringent New Evolutionary Selection Process

scientific article published on 13 November 2019

A giant virus in amoebae

scientific article (publication date: 28 March 2003)

A holistic approach to marine eco-systems biology

scientific article

A new example of viral intein in Mimivirus

scientific article

A new protein sequence data bank

scientific article published in Nature

A new simple method to determine the diffusion coefficient from active enzyme centrifugation experiments.

scientific article published in June 1980

A streamlined random sequencing strategy for finding coding exons.

scientific article published on October 1994

A strong propensity toward loop formation characterizes the expressed reading frames of the D segments at the Ig H and T cell receptor loci.

scientific article published in December 1991

ACDtool: a web-server for the generic analysis of large data sets of counts

scholarly article by Jean-Michel Claverie published in July 2018

Alternate Polyadenylation in Human mRNAs: A Large-Scale Analysis by EST Clustering ⬇️

scientific article published on May 1, 1998

Alu alert

scientific article published in Nature

An extra large giant virus

scientific article published in January 2005

Annotation of bacterial genomes using improved phylogenomic profiles

scientific article published on 01 January 2003

Antibodies and reactive T cells against the malaria heat-shock protein Pf72/Hsp70-1 and derived peptides in individuals continuously exposed to Plasmodium falciparum ⬇️

scientific article published on November 15, 1992

Are viruses viruses, after all?

scientific article published on 01 August 2013

BLAST-EXPLORER helps you building datasets for phylogenetic analysis.

scientific article

Bayesian decomposition analysis of bacterial phylogenomic profiles.

scientific article

Benthic protists: the under-charted majority

scientific article

Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing

scientific article

Brucella microti: the genome sequence of an emerging pathogen

scientific article

CRISPR-Cas-like system in giant viruses: why MIMIVIRE is not likely to be an adaptive immune system

scientific article published on 13 June 2016

CaspR: a web server for automated molecular replacement using homology modelling

scientific article published on July 2004

Characterization and chromosomal assignment of a human cDNA encoding a protein related to the murine 102-kDa cadherin-associated protein (alpha-catenin)

scientific article

Characterization of Mollivirus kamchatka, the First Modern Representative of the Proposed Molliviridae Family of Giant Viruses

scientific article published on 31 March 2020

Characterization of the naturally occurring oxacillinase of Acinetobacter baumannii

scientific article

Claverie, Jean-Michel

scientific article published in Science

Comparative Genomics of Chrysochromulina Ericina Virus and Other Microalga-Infecting Large DNA Viruses Highlights Their Intricate Evolutionary Relationship with the Established Mimiviridae Family

scientific article published on 26 April 2017

Comparative analysis of Acinetobacters: three genomes for three lifestyles

scientific article published on 19 March 2008

Comparative analysis of the Arabidopsis and rice expressed sequence tag (EST) sets.

scientific article published in January 1999

Comparative genomics of multidrug resistance in Acinetobacter baumannii

scientific article

Complete Genome Sequence of a New Member of the Marseilleviridae Recovered from the Brackish Submarine Spring in the Cassis Port-Miou Calanque, France.

scientific article

Computational methods for exon detection.

scientific article published in August 1998

Computational methods for the identification of differential and coordinated gene expression.

scientific article

Computational methods for the identification of genes in vertebrate genomic sequences.

scientific article published on January 1997

Computer generation and statistical analysis of a data bank of protein sequences translated from GenBank.

scientific article

Conformational analysis of t immunogenic peptides by circular dichroism spectroscopy

article

Correlations in intronless DNA

scientific article published on October 29, 1992

Cryo-EM Of AMarseilleviridaeVirus Particle Reveals A Large Internal Microassembly

Cryo-EM structure of a Marseilleviridae virus particle reveals a large internal microassembly.

scientific article

Crystal structure of Escherichia coli DkgA, a broad-specificity aldo-keto reductase

scientific article

Crystallization and preliminary crystallographic study of HIP/PAP, a human C-lectin overexpressed in primary liver cancers

scientific article

Crystallization and preliminary crystallographic study of a component of the Escherichia coli Tol system: TolB

scientific article published on 01 January 1998

Crystallization and preliminary crystallographic study of b0220, an `ORFan' protein of unknown function fromEscherichia coli

scientific article published on 01 December 2000

Determination of strongly overlapping signaling activity from microarray data.

scientific article

Diatom diversity through HTS-metabarcoding in coastal European seas

scientific article published in Scientific Reports

Discovery of protein-coding palindromic repeats in Wolbachia

scientific article published on June 2005

Dissecting the Unique Nucleotide Specificity of Mimivirus Nucleoside Diphosphate Kinase

scientific article

Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae

scientific article

Distribution patterns of microbial communities in ultramafic landscape: a metagenetic approach highlights the strong relationships between diversity and environmental traits.

scientific article

Diversity and evolution of the emerging Pandoraviridae family

scientific article published on 8 December 2017

Diversity and evolution of the emerging Pandoraviridae family.

scientific article

Diversité des virus géants

scientific article published on 01 February 2016

Draft Genome Sequence of an Alphaproteobacterium Associated with the Mediterranean Sponge Oscarella lobularis.

scientific article published on 3 September 2015

Editorial: Viruses, Genetic Exchange, and the Tree of Life

scientific article published on 29 November 2019

Escherichia coli ykfE ORFan gene encodes a potent inhibitor of C-type lysozyme.

scientific article

Expanding the Mimiviridae family using asparagine synthase as a sequence bait

scientific article

Exploration of the propagation of transpovirons within Mimiviridae reveals a unique example of commensalism in the viral world

scientific article published on 10 December 2019

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

scientific article

Exploring the microbiome of the “star” freshwater diatom Asterionella formosa in a laboratory context

scientific article published on 10 October 2018

Extensive structural homology between H-2 K/D/L antigens and non-polymorphic class I Qa, Tla and “37” molecules suggests they may act as peptide carriers

scientific article published on 01 February 1989

From Bioinformatics to Computational Biology

scientific article published on 01 September 2000

From extraordinary endocytobionts to pandoraviruses. Comment on Scheid et al.: Some secrets are revealed: parasitic keratitis amoebae as vectors of the scarcely described pandoraviruses to humans

scientific article published on 19 August 2014

Frozen Zoo: a collection of permafrost samples containing viable protists and their viruses

scientific article published on 10 July 2020

Fundamental Difficulties Prevent the Reconstruction of the Deep Phylogeny of Viruses

scientific article published on 06 October 2020

FusionDB: a database for in-depth analysis of prokaryotic gene fusion events

scientific article published on January 2004

Gene expression in proliferating cells of the dinoflagellate Alexandrium catenella (Dinophyceae).

scientific article

Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria

scientific article

Genome analysis of the first Marseilleviridae representative from Australia indicates that most of its genes contribute to virus fitness

scientific article

Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes

scientific article published on 10 June 2013

Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens

scientific article published on 12 May 2006

Genomic correlates of hyperthermostability, an update

scientific article published on 24 February 2003

Genomics of Megavirus and the elusive fourth domain of Life

scientific article

Giant DNA virus mimivirus encodes pathway for biosynthesis of unusual sugar 4-amino-4,6-dideoxy-D-glucose (Viosamine)

scientific article published on 8 December 2011

Giant virus in the sea: Extending the realm of Megaviridae to Viridiplantae.

scientific article published on 12 July 2013

Giant viruses

scientific article published on 01 October 2020

Giant viruses in the oceans: the 4th Algal Virus Workshop

scientific article

Giant viruses: The difficult breaking of multiple epistemological barriers

scientific article published on 10 March 2016

Giant viruses: update, enigmas, controversies and perspectives

scientific article published on December 2016

Global warming and planetary health: An open letter to the WHO from scientific and indigenous people urging for paleo-microbiology studies

scientific article published on 10 March 2020

Heart specific genes revealed by EST sampling.

scientific article

Heart-specific genes revealed by expressed sequence tag (EST) sampling

scientific article

Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses

scientific article

Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus

scientific article published on 18 May 2009

How to Infect a Mimivirus

scientific article published in Science

Identification of T cell peptides from C gamma 2ab involved in IgG2ab T cell-induced allotypic suppression. Relationship with the MHC haplotype of the suppressor T cell-donor Igha mice.

scientific article published in August 1993

Identification of a major human immunodeficiency virus-1 reverse transcriptase epitope recognized by mouse CD4+ T lymphocytes ⬇️

scientific article published on June 1, 1991

Identification of odorant receptors from the Alpine marmot (Marmota marmota).

scientific article published in November 2000

Identifying coding exons by similarity search: alu-derived and other potentially misleading protein sequences

scientific article published on April 1, 1992

Impact of the excision of an ancient repeat insertion on Rickettsia conorii guanylate kinase activity

scientific article

In Ssarch of new anti-bacterial target genes: a comparative/structural genomics approach

scientific article

In Vivo Evolution of Bacterial Resistance in Two Cases of Enterobacter aerogenes Infections during Treatment with Imipenem

scientific article published on 23 September 2015

In-depth study of Mollivirus sibericum, a new 30,000-y-old giant virus infecting Acanthamoeba

scientific article

Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome

scientific article

Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton

scientific article

Marine mimivirus relatives are probably large algal viruses.

scientific article

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

scientific article published on 28 June 2015

Mechanisms of evolution in Rickettsia conorii and R. prowazekii

scientific article (publication date: 14 September 2001)

Metagenomic survey of the microbiome of ancient Siberian permafrost and modern Kamchatkan cryosols

scientific article published in 2022

Metagrowth: a new resource for the building of metabolic hypotheses in microbiology

scientific article

Mimiviridae: A Rising Family of Highly Diverse Large Aquatic dsDNA Viruses Infecting a Wide Variety of Eukaryotes

Mimiviridae: An Expanding Family of Highly Diverse Large dsDNA Viruses Infecting a Wide Phylogenetic Range of Aquatic Eukaryotes

scholarly article by Jean-Michel Claverie published in September 2018

Mimivirus TyrRS: preliminary structural and functional characterization of the first amino-acyl tRNA synthetase found in a virus

scientific article published on 20 January 2005

Mimivirus and Mimiviridae: giant viruses with an increasing number of potential hosts, including corals and sponges

scientific article published on 18 May 2009

Mimivirus and its virophage

scientific article published on January 2009

Mimivirus and the emerging concept of "giant" virus

scientific article published on 15 February 2006

Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes

scientific article

Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products

scientific article published on 13 September 2006

Mimivirus relatives in the Sargasso sea

scientific article

Mimivirus reveals Mre11/Rad50 fusion proteins with a sporadic distribution in eukaryotes, bacteria, viruses and plasmids

scientific article

Mimivirus.

scientific article published on January 2009

Mimivirus: the emerging paradox of quasi-autonomous viruses

scientific article

Mitochondrial Genome Sequence of the Glass Sponge Oopsacas minuta

scientific article published on 30 July 2015

Mutations of Chinese hamster somatic cells from 2-deoxygalactose sensitivity to resistance ⬇️

scientific article published on June 1, 1979

Nef and Gag synthetic peptide priming of antibody responses to HIV type 1 antigens in mice and primates

article

New genomic data and analyses challenge the traditional vision of animal epithelium evolution.

scientific article published on 24 May 2018

Noumeavirus replication relies on a transient remote control of the host nucleus

scientific article

Objective comparison of exon and intron sequences by the mean of 2-dimensional data analysis methods ⬇️

scientific article published on March 11, 1988

Open Questions About Giant Viruses

scientific article published on January 1, 2013

Pan genome of the phytoplankton Emiliania underpins its global distribution.

scientific article

Pandoravirus Celtis Illustrates the Microevolution Processes at Work in the Giant Genomes

scientific article published on 08 March 2019

Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes.

scientific article

Patterns of rare and abundant marine microbial eukaryotes

scientific article

Phosphorylation of Intracellular Fructose in Bacillus subtilis Mediated by Phosphoenolpyruvate-l-Fructose Phosphotransferase

scientific article published on 01 July 1976

Phydbac "Gene Function Predictor": a gene annotation tool based on genomic context analysis

scientific article

Phydbac (phylogenomic display of bacterial genes): An interactive resource for the annotation of bacterial genomes

scientific article

Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis

scientific article published on July 2004

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

scientific article (publication date: July 2008)

Pithovirus sibericum : réveil d’un virus géant de plus de 30 000 ans

Positional clustering of differentially expressed genes on human chromosomes 20, 21 and 22

scientific article published on 10 January 2003

Protein coding palindromes are a unique but recurrent feature in Rickettsia

scientific article published on May 2002

Quantitative Analysis of the T Cell Repertoire Selected by a Single Peptide–Major Histocompatibility Complex ⬇️

scientific article published on June 1, 1998

Random association between the peptide repertoire of A2.1 class I and several different DR class II molecules ⬇️

scientific article published on December 1, 1991

Rare sequence motifs are common constituents of hypervariable antibody regions.

scientific article published in September 1987

Re-emerging infectious diseases from the past: Hysteria or real risk?

scientific article

Reductive genome evolution from the mother of Rickettsia

scientific article

Relevance of the lariat model to the splicing of the H-2 gene family

article

Remarkable sequence similarity between the dinoflagellate-infecting marine girus and the terrestrial pathogen African swine fever virus

scientific article

Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages

scientific article

Rickettsia felis, from culture to genome sequencing.

scientific article

SAmBA: an interactive software for optimizing the design of biological macromolecules crystallization experiments.

scientific article published on October 1997

Sedimentation of generalized systems of interacting particles. I. Solution of systems of complete Lamm equations

article by Jean-Michel Claverie et al published August 1975 in Biopolymers

Sedimentation of generalized systems of interacting particles. II. Active enzyme centrifugation--theory and extensions of its validity range

scientific article published on August 1, 1975

Sedimentation studies of the reversible dimer-tetramer transition kinetics of concanavalin A

scientific article published on 01 January 1978

Self-identification of protein-coding regions in microbial genomes.

scientific article

Sequence patterns in protein kinases.

scientific article published in January 1988

Sequencing the erbA gene of avian erythroblastosis virus reveals a new type of oncogene.

scientific article

Single mimivirus particles intercepted and imaged with an X-ray laser

scientific article

Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser

scientific article

Smoothing profiles with sliding windows: better to wear a hat!

scientific article published on 01 January 1991

Structural and Genomic Correlates of Hyperthermostability

scientific article published in Journal of Biological Chemistry

Structural characterization of CA1462, the Candida albicans thiamine pyrophosphokinase

scientific article

Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets

scientific article

Structural variability and complexity of the giant Pithovirus sibericum particle revealed by high-voltage electron cryo-tomography and energy-filtered electron cryo-microscopy

scientific article published on 16 October 2017

Structure and evolution of the Ivy protein family, unexpected lysozyme inhibitors in Gram-negative bacteria

scientific article

Structure of the ecdysone-inducible P1 gene of Drosophila melanogaster ⬇️

scientific article published on July 20, 1990

T cells recognize antigen alone and not MHC molecules

T lymphoma variants with specifically altered growth in semi-solid media

scientific article published on 01 November 1983

Taxonomic distribution of large DNA viruses in the sea

scientific article

Tentative mapping of transcription-induced interchromosomal interaction using chimeric EST and mRNA data

scientific article

The 1.2-megabase genome sequence of Mimivirus

scientific article

The 474-Kilobase-Pair Complete Genome Sequence of CeV-01B, a Virus Infecting Haptolina (Chrysochromulina) ericina (Prymnesiophyceae).

scientific article

The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex

scientific article

The DNA methylation landscape of giant viruses

scientific article published on 27 May 2020

The Structure of Acidithiobacillus ferrooxidans c4-Cytochrome

The WHO mission report struggles to trace the origins of the SARS-CoV-2 epidemic

scholarly article

The conserved Candida albicans CA3427 gene product defines a new family of proteins exhibiting the generic periplasmic binding protein structural fold

scientific article

The difficulty of identifying genes in anonymous vertebrate sequences ⬇️

scientific article published on January 1, 1997

The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii

scientific article

The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation

scientific article

The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella

scientific article

The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite

scientific article

The human gene damage index as a gene-level approach to prioritizing exome variants

scientific article

The insertion of palindromic repeats in the evolution of proteins.

scientific article published on February 2003

The megavirus chilensis Cu,Zn-superoxide dismutase: the first viral structure of a typical cellular copper chaperone-independent hyperstable dimeric enzyme

scientific article

The nucleoside diphosphate kinase from mimivirus: a peculiar affinity for deoxypyrimidine nucleotides

The peptidic self model: a hypothesis on the molecular nature of the immunological self.

scientific article published on July 1986

The polyadenylation site of Mimivirus transcripts obeys a stringent 'hairpin rule'.

scientific article published on 29 April 2009

The rapidly expanding universe of giant viruses: Mimivirus, Pandoravirus, Pithovirus and Mollivirus

scientific article

The significance of digital gene expression profiles

scientific article (publication date: October 1997)

The statistical significance of nucleotide position-weight matrix matches.

scientific article published in October 1996

The structure of Acidithiobacillus ferrooxidans c(4)-cytochrome: a model for complex-induced electron transfer tuning

scientific article (publication date: May 2003)

Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology

scientific article

Three-dimensional reconstruction of the giant mimivirus particle with an x-ray free-electron laser.

scientific article published on 2 March 2015

Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses.

scientific article

Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell

scientific article (publication date: 2009)

Translation in giant viruses: a unique mixture of bacterial and eukaryotic termination schemes

scientific article

Triple association of CDC25-, Dbl- and Sec7-related domains in mammalian guanine-nucleotide-exchange factors

scientific article published on 01 December 1998

Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome

scientific article

Two new subfamilies of DNA mismatch repair proteins (MutS) specifically abundant in the marine environment

scientific article

Unique genes in giant viruses: regular substitution pattern and anomalously short size.

scientific article

Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering

scientific article

Variability analysis of the human and mouse T-cell receptor ? chains

scientific article published on 01 January 1987

Virus-Encoded Aminoacyl-tRNA Synthetases: Structural and Functional Characterization of Mimivirus TyrRS and MetRS

scientific article

Viruses take center stage in cellular evolution

scientific article

Visualizing the competitive recognition of TATA-boxes in vertebrate promoters

scientific article published on 01 January 1998

WOBB.C: a portable software package for defining and searching ambiguous sequence patterns.

scientific article published in August 1991

What If There Are Only 30,000 Human Genes?

scientific article

[15] k-tuple frequency analysis: From intron/exon discrimination to T-cell epitope mapping

article

[Giant viruses that create their own genes]

scientific article published on 01 December 2018

[Quality control of multicenter evaluation studies of the in vitro activity of antibiotics]

scientific article published on 01 June 1987

mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus

scientific article

mRNA maturation in giant viruses: variation on a theme.

scientific article

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