List of works - Juri Rappsilber

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

scientific article (publication date: 2007)

Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics

scientific article (publication date: February 2003)

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

scientific article (publication date: September 2005)

Large-scale proteomic analysis of the human spliceosome

scientific article

UTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development

scientific article (publication date: 11 October 2007)

TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity

scientific journal article

miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs

scientific article

A model for transmission of the H3K27me3 epigenetic mark

scientific article published on 19 October 2008

The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3

scientific article (publication date: 20 July 2006)

JARID2 regulates binding of the Polycomb repressive complex 2 to target genes in ES cells

scientific article

Implications for kinetochore-microtubule attachment from the structure of an engineered Ndc80 complex

scientific article

Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex

scientific article

RBP2 belongs to a family of demethylases, specific for tri-and dimethylated lysine 4 on histone 3

scientific article

Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly

scientific article (publication date: 11 October 2001)

BoxPlotR: a web tool for generation of box plots

scientific article published on February 2014

Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry

scientific article

The methylosome, a 20S complex containing JBP1 and pICln, produces dimethylarginine-modified Sm proteins

scientific article

Protein abundance profiling of the Escherichia coli cytosol

scientific article

The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes

scientific article published on October 26, 2010

The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics

scientific article

Rett syndrome mutations abolish the interaction of MeCP2 with the NCoR/SMRT co-repressor

scientific journal article

Nascent chromatin capture proteomics determines chromatin dynamics during DNA replication and identifies unknown fork components

scientific article

Phosphodependent recruitment of Bub1 and Bub3 to Spc7/KNL1 by Mph1 kinase maintains the spindle checkpoint.

scientific article published on 19 April 2012

Structural Analysis of Multiprotein Complexes by Cross-linking, Mass Spectrometry, and Database Searching

article

The NOT proteins are part of the CCR4 transcriptional complex and affect gene expression both positively and negatively

scientific article published on February 1998

Modular stop and go extraction tips with stacked disks for parallel and multidimensional Peptide fractionation in proteomics

scientific article published in April 2006

A novel WD repeat protein component of the methylosome binds Sm proteins

scientific article (publication date: 8 March 2002)

Microcolumns with self-assembled particle frits for proteomics

scientific article published on 01 December 2002

A functional interaction between the survival motor neuron complex and RNA polymerase II

scientific article

Fission yeast Scm3: A CENP-A receptor required for integrity of subkinetochore chromatin

scientific article (publication date: 13 February 2009)

Bypass of senescence by the polycomb group protein CBX8 through direct binding to the INK4A-ARF locus

scientific article

Stc1: a critical link between RNAi and chromatin modification required for heterochromatin integrity.

scientific article

eIF4A3 is a novel component of the exon junction complex

scientific article

A novel complex of membrane proteins required for formation of a spherical nucleus.

scientific article

Gemin5, a novel WD repeat protein component of the SMN complex that binds Sm proteins

scientific article

A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry.

scientific article

Purification and characterization of the 1.0 MDa CCR4-NOT complex identifies two novel components of the complex

scientific article

A functional link between the histone demethylase PHF8 and the transcription factor ZNF711 in X-linked mental retardation

scientific article

Repo-Man coordinates chromosomal reorganization with nuclear envelope reassembly during mitotic exit.

scientific article

Purification of native survival of motor neurons complexes and identification of Gemin6 as a novel component

scientific article

xiNET: cross-link network maps with residue resolution

scientific article

What does it mean to identify a protein in proteomics?

scientific article

Splicing factors facilitate RNAi-directed silencing in fission yeast

scientific article

Exploring the hidden human urinary proteome via ligand library beads

scientific article published in November 2005

Detection of arginine dimethylated peptides by parallel precursor ion scanning mass spectrometry in positive ion mode

scientific article (publication date: July 2003)

Arginine methylation of Aubergine mediates Tudor binding and germ plasm localization

scientific article

REST-mediated recruitment of polycomb repressor complexes in mammalian cells

scientific article

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

scientific article published on 18 June 2015

Quantitative cross-linking/mass spectrometry using isotope-labelled cross-linkers

scientific article published on March 26, 2013

Identification and characterization of Gemin7, a novel component of the survival of motor neuron complex

scientific article

List of works by Juri Rappsilber

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

Large-scale proteomic analysis of the human spliceosome

UTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development

TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity

miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs

A model for transmission of the H3K27me3 epigenetic mark

The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3

JARID2 regulates binding of the Polycomb repressive complex 2 to target genes in ES cells

Implications for kinetochore-microtubule attachment from the structure of an engineered Ndc80 complex

Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex

RBP2 belongs to a family of demethylases, specific for tri-and dimethylated lysine 4 on histone 3

Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly

BoxPlotR: a web tool for generation of box plots

Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry

The methylosome, a 20S complex containing JBP1 and pICln, produces dimethylarginine-modified Sm proteins

Protein abundance profiling of the Escherichia coli cytosol

The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes

The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics

Rett syndrome mutations abolish the interaction of MeCP2 with the NCoR/SMRT co-repressor

Nascent chromatin capture proteomics determines chromatin dynamics during DNA replication and identifies unknown fork components

Phosphodependent recruitment of Bub1 and Bub3 to Spc7/KNL1 by Mph1 kinase maintains the spindle checkpoint.

Structural Analysis of Multiprotein Complexes by Cross-linking, Mass Spectrometry, and Database Searching

The NOT proteins are part of the CCR4 transcriptional complex and affect gene expression both positively and negatively

Modular stop and go extraction tips with stacked disks for parallel and multidimensional Peptide fractionation in proteomics

A novel WD repeat protein component of the methylosome binds Sm proteins

Microcolumns with self-assembled particle frits for proteomics

A functional interaction between the survival motor neuron complex and RNA polymerase II

Fission yeast Scm3: A CENP-A receptor required for integrity of subkinetochore chromatin

Bypass of senescence by the polycomb group protein CBX8 through direct binding to the INK4A-ARF locus

Stc1: a critical link between RNAi and chromatin modification required for heterochromatin integrity.

eIF4A3 is a novel component of the exon junction complex

A novel complex of membrane proteins required for formation of a spherical nucleus.

Gemin5, a novel WD repeat protein component of the SMN complex that binds Sm proteins

A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry.

Purification and characterization of the 1.0 MDa CCR4-NOT complex identifies two novel components of the complex

A functional link between the histone demethylase PHF8 and the transcription factor ZNF711 in X-linked mental retardation

Repo-Man coordinates chromosomal reorganization with nuclear envelope reassembly during mitotic exit.

Purification of native survival of motor neurons complexes and identification of Gemin6 as a novel component

xiNET: cross-link network maps with residue resolution

What does it mean to identify a protein in proteomics?

Splicing factors facilitate RNAi-directed silencing in fission yeast

Exploring the hidden human urinary proteome via ligand library beads

Detection of arginine dimethylated peptides by parallel precursor ion scanning mass spectrometry in positive ion mode

Arginine methylation of Aubergine mediates Tudor binding and germ plasm localization

REST-mediated recruitment of polycomb repressor complexes in mammalian cells

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

Quantitative cross-linking/mass spectrometry using isotope-labelled cross-linkers

Identification and characterization of Gemin7, a novel component of the survival of motor neuron complex