Search filters

List of works by Juri Rappsilber

14-3-3 regulation of Ncd reveals a new mechanism for targeting proteins to the spindle in oocytes.

scientific article published on 31 August 2017

A Focus on Chromatin Proteomics

scientific article published on 01 February 2016

A Primer on Data Analytics in Functional Genomics: How to Move from Data to Insight?

scholarly article by Piotr Grabowski & Juri Rappsilber published 1 January 2019 in Trends in Biochemical Sciences

A Single α Helix Drives Extensive Remodeling of the Proteasome Lid and Completion of Regulatory Particle Assembly

scientific article

A Structure-Based Mechanism for DNA Entry into the Cohesin Ring

scientific article published on 30 July 2020

A Study into the Collision-induced Dissociation (CID) Behavior of Cross-Linked Peptides

scientific article published on 30 December 2015

A central cavity within the holo-translocon suggests a mechanism for membrane protein insertion

scientific article published on 07 December 2016

A folded conformation of MukBEF and Cohesin

A folded conformation of MukBEF and cohesin

scientific article published on 04 March 2019

A functional interaction between the survival motor neuron complex and RNA polymerase II

scientific article

A functional link between the histone demethylase PHF8 and the transcription factor ZNF711 in X-linked mental retardation

scientific article

A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry.

scientific article

A genetic engineering solution to the "arginine conversion problem" in stable isotope labeling by amino acids in cell culture (SILAC).

scientific article

A model for transmission of the H3K27me3 epigenetic mark

scientific article published on 19 October 2008

A novel WD repeat protein component of the methylosome binds Sm proteins

scientific article (publication date: 8 March 2002)

A novel combination of chemical cross-linking, mass spectrometry and NMR reveals the architecture of complement component C7

A novel complex of membrane proteins required for formation of a spherical nucleus.

scientific article

A novel in vitro metabolomics approach for neurotoxicity testing, proof of principle for methyl mercury chloride and caffeine

scientific article published on 2 October 2007

A programmed wave of uridylation-primed mRNA degradation is essential for meiotic progression and mammalian spermatogenesis

scientific article published on 07 January 2019

A protocol for studying structural dynamics of proteins by quantitative crosslinking mass spectrometry and data-independent acquisition

scientific article published on 25 February 2020

A systematic analysis of <i>Trypanosoma brucei</i> chromatin factors identifies novel protein interaction networks associated with sites of transcription initiation and termination

scientific article published on 18 August 2021

A systematic genetic screen identifies new factors influencing centromeric heterochromatin integrity in fission yeast

scientific article

A yeast exosome cofactor, Mpp6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts

scientific article

An integrated workflow for crosslinking mass spectrometry

An integrated workflow for crosslinking mass spectrometry

scientific article published on 01 September 2019

An open invitation to the Understudied Proteins Initiative

scientific article published on 9 May 2022

Analysis of the Topology of Protein Complexes Using Cross-Linking and Mass Spectrometry

article

Anatomy of a crosslinker

scientific article published on 20 August 2020

Architecture of TAF11/TAF13/TBP complex suggests novel regulation properties of general transcription factor TFIID.

scientific article published on 7 November 2017

Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry

scientific article

Arginine methylation of Aubergine mediates Tudor binding and germ plasm localization

scientific article

Arginine methylation of vasa protein is conserved across phyla

scientific article

Assessment of chemical-crosslink-assisted protein structure modeling in CASP13

scientific article published on 07 October 2019

Assessment of chemical-crosslink-assisted protein structure modeling in CASP13

scientific article published on 03 January 2020

Auxin/AID versus conventional knockouts: distinguishing the roles of CENP-T/W in mitotic kinetochore assembly and stability

scientific article published on January 2016

Biochemie und Molekulargenetik 2001

Blind Evaluation of Hybrid Protein Structure Analysis Methods based on Cross-Linking

scientific article

Blind testing cross-linking/mass spectrometry under the auspices of the 11th critical assessment of methods of protein structure prediction (CASP11)

scientific article

Blind testing cross-linking/mass spectrometry under the auspices of the 11th critical assessment of methods of protein structure prediction (CASP11)

Blind testing of cross-linking/mass spectrometry hybrid methods in CASP11.

scientific article

Borealin-nucleosome interaction secures chromosome association of the chromosomal passenger complex

scientific article published on 30 September 2019

BoxPlotR: a web tool for generation of box plots

scientific article published on February 2014

Building mitotic chromosomes

scientific article published on 23 October 2010

Bypass of senescence by the polycomb group protein CBX8 through direct binding to the INK4A-ARF locus

scientific article

CENP-A confers a reduction in height on octameric nucleosomes

scientific article published on 5 May 2013

Capturing protein communities by structural proteomics in a thermophilic eukaryote.

scientific article published on 25 July 2017

Cdc14 phosphatase directs centrosome re-duplication at the meiosis I to meiosis II transition in budding yeast

scientific article (publication date: 5 January 2017)

Cell cycle regulation of microtubule interactomes: multi-layered regulation is critical for the interphase/mitosis transition

scientific article published on 26 July 2013

Chemical Evolution of a Bacterial Proteome

scientific article published on July 2015

Chromatin enrichment for proteomics

scientific article

Co-regulation map of the human proteome enables identification of protein functions

scientific article published on 04 November 2019

Cohesin-dependent association of scc2/4 with the centromere initiates pericentromeric cohesion establishment

scientific article

Complement Evasion Mediated by Enhancement of Captured Factor H: Implications for Protection of Self-Surfaces from Complement

scientific article

Complementary Benzophenone Cross-Linking/Mass Spectrometry Photochemistry.

scientific article published on 21 April 2017

Complex Portal 2022: new curation frontiers

scientific article

ComplexViewer: visualization of curated macromolecular complexes

scientific article published on 3 August 2017

Compositional Dynamics: Defining the Fuzzy Cell

scientific article published on 17 September 2016

Comprehensive identification of proteins binding to RNA G-quadruplex motifs in the 5' UTR of tumor-associated mRNAs

scientific article published on 9 November 2017

Correction to Optimized Fragmentation Regime for Diazirine Photo-Cross-Linked Peptides

scientific article published on 28 February 2017

Correction: Kicking against the PRCs--A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2

scientific article published on 19 February 2016

Correction: Mps1Mph1 Kinase Phosphorylates Mad3 to Inhibit Cdc20Slp1-APC/C and Maintain Spindle Checkpoint Arrests

scientific article published on 21 April 2016

Cross-linking mass spectrometry identifies new interfaces of Augmin required to localise the γ-tubulin ring complex to the mitotic spindle

scientific article

Cross-linking mass spectrometry: methods and applications in structural, molecular and systems biology

scholarly article by Francis J O'Reilly published in October 2018

Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines

scientific article

Cross-linking/mass spectrometry as a new field and the proteomics information mountain of tomorrow ⬇️

scientific article published on October 1, 2012

Cryo-EM reveals the complex architecture of dynactin's shoulder region and pointed end

scientific article published on 18 March 2021

Cryo-EM structures of holo condensin reveal a subunit flip-flop mechanism

scientific article published on 13 July 2020

Cryo-EM structures of the human Elongator complex at work

scientific article published in 2024

Cyclin F suppresses B-Myb activity to promote cell cycle checkpoint control

scientific article

Cytoplasmic TAF2-TAF8-TAF10 complex provides evidence for nuclear holo-TFIID assembly from preformed submodules.

scientific article

DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network

scientific article published on 14 April 2021

Data-independent Acquisition Improves Quantitative Cross-linking Mass Spectrometry

scientific article published on 16 January 2019

Defining the RNA Interactome by Total RNA-Associated Protein Purification

Defining the RNA interactome by total RNA-associated protein purification

scientific article published on 08 April 2019

Deletion of Genes Encoding Arginase Improves Use of "Heavy" Isotope-Labeled Arginine for Mass Spectrometry in Fission Yeast.

scientific article published on 15 June 2015

Detection of arginine dimethylated peptides by parallel precursor ion scanning mass spectrometry in positive ion mode

scientific article (publication date: July 2003)

Direct Evidence for Sister Kinetochore Fusion in Meiosis I

Direct interaction of actin filaments with F-BAR protein pacsin2.

scientific article

Drosophila Syncrip binds the gurken mRNA localisation signal and regulates localised transcripts during axis specification ⬇️

scientific article published on April 11, 2012

Dynamics of ribosomal protein S1 on a bacterial ribosome with cross-linking and mass spectrometry

scientific article

Eic1 links Mis18 with the CCAN/Mis6/Ctf19 complex to promote CENP-A assembly

scientific article

Endogenous Mouse Dicer Is an Exclusively Cytoplasmic Protein

scientific article

Epigenetic Variability Confounds Transcriptome but Not Proteome Profiling for Coexpression-based Gene Function Prediction

article

Experiences and perspectives of MALDI MS and MS/MS in proteomic research

Exploring the hidden human urinary proteome via ligand library beads

scientific article published in November 2005

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

scientific article (publication date: September 2005)

Exportin Crm1 is repurposed as a docking protein to generate microtubule organizing centers at the nuclear pore

Exportin Crm1 is repurposed as a docking protein to generate microtubule organizing centers at the nuclear pore.

scientific article

FANCD2-FANCI is a clamp stabilized on DNA by monoubiquitination of FANCD2 during DNA repair

scientific article published on 17 February 2020

False discovery rate estimation and heterobifunctional cross-linkers

False discovery rate estimation and heterobifunctional cross-linkers.

scientific article

Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures

scientific article published on 25 November 2019

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

scientific article published on 22 May 2019

Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex

scientific article published on 01 February 2019

Fission yeast NDR/LATS kinase Orb6 regulates exocytosis via phosphorylation of exocyst complex

Fission yeast Scm3: A CENP-A receptor required for integrity of subkinetochore chromatin

scientific article (publication date: 13 February 2009)

G9a/GLP Complex Maintains Imprinted DNA Methylation in Embryonic Stem Cells

scientific article published on 22 March 2016

Gain-of-function DNMT3A mutations cause microcephalic dwarfism and hypermethylation of Polycomb-regulated regions

scientific article published on 26 November 2018

Gemin5, a novel WD repeat protein component of the SMN complex that binds Sm proteins

scientific article

Gemin8 is a novel component of the survival motor neuron complex and functions in small nuclear ribonucleoprotein assembly

scientific article

Genes Important for Schizosaccharomyces pombe Meiosis Identified Through a Functional Genomics Screen.

scientific article published on 19 December 2017

Genetic code expansion for multiprotein complex engineering.

scientific article

Hap2-Ino80-facilitated transcription promotes de novo establishment of CENP-A chromatin

scientific article published on 09 January 2020

Heterologous Biosynthesis, Modifications and Structural Characterization of Ruminococcin-A, a Lanthipeptide From the Gut Bacterium Ruminococcus gnavus E1, in Escherichia coli

scientific article published on 26 July 2018

Identification and characterization of Gemin7, a novel component of the survival of motor neuron complex

scientific article

Identification of RNA-associated peptides, iRAP, defines precise sites of protein-RNA interaction

Implications for kinetochore-microtubule attachment from the structure of an engineered Ndc80 complex

scientific article

Improved results in proteomics by use of local and peptide-class specific false discovery rates

scientific article published on 12 June 2009

In Situ Structural Restraints from Cross-Linking Mass Spectrometry in Human Mitochondria

scientific article published on 19 December 2019

In-Search Assignment of Monoisotopic Peaks Improves the Identification of Cross-Linked Peptides

scientific article

In-Search Assignment of Monoisotopic Peaks Improves the Identification of Cross-Linked Peptides

In-cell architecture of an actively transcribing-translating expressome

scientific article published on 01 July 2020

Inside Cover: Chemical Evolution of a Bacterial Proteome (Angew. Chem. Int. Ed. 34/2015)

Is mass spectrometry ready for proteome-wide protein expression analysis?

scientific article

Isolation of acetylated and unmodified protein N-terminal peptides by strong cation exchange chromatographic separation of TrypN-digested peptides

scientific article published on 02 November 2020

JAMI: a Java library for molecular interactions and data interoperability

scientific article published on 11 April 2018

JARID2 regulates binding of the Polycomb repressive complex 2 to target genes in ES cells

scientific article

Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.

scientific article published on 7 December 2015

Kinase activity of fission yeast Mph1 is required for Mad2 and Mad3 to stably bind the anaphase promoting complex

scientific article published on 25 January 2012

Labile sulfogroup allows differentiation of sulfotyrosine and phosphotyrosine in peptides

scientific article published in July 2001

Laboratory evolution of Escherichia coli enables life based on fluorinated amino acids

scholarly article published 10 June 2019

Lamin A molecular compression and sliding as mechanisms behind nucleoskeleton elasticity

scientific article published on 11 July 2019

Large-scale proteomic analysis of the human spliceosome

scientific article

Leveraging Parameter Dependencies in High-Field Asymmetric Waveform Ion-Mobility Spectrometry and Size Exclusion Chromatography for Proteome-wide Cross-Linking Mass Spectrometry

scientific article published on 11 March 2022

Lin28a regulates neuronal differentiation and controls miR-9 production

scientific article

Loss of 5-methylcytosine alters the biogenesis of vault-derived small RNAs to coordinate epidermal differentiation

scientific article published on 11 June 2019

Mapping the invisible chromatin transactions of prophase chromosome remodeling

scientific article published on 31 January 2022

Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex

scientific article

Mechanism for Aar2p function as a U5 snRNP assembly factor

scientific article

Megadalton-sized Dityrosine Aggregates of α-Synuclein Retain High Degrees of Structural Disorder and Internal Dynamics

scientific article published on 22 October 2020

Microcolumns with self-assembled particle frits for proteomics

scientific article published on 01 December 2002

Microtubule Nucleation Properties of Single Human γTuRCs Explained by Their Cryo-EM Structure

scientific article published on 14 May 2020

Mitotic chromosomes are compacted laterally by KIF4 and condensin and axially by topoisomerase IIα

scientific article published on 19 November 2012

Model for stathmin/OP18 binding to tubulin

scientific article published on January 2000

Modular stop and go extraction tips with stacked disks for parallel and multidimensional Peptide fractionation in proteomics

scientific article published in April 2006

Molecular and genetic analysis of condensin function in vertebrate cells

scientific article published on 14 May 2008

Molecular architecture of the Dam1 complex-microtubule interaction.

scientific article

Molecular interactions between Hel2 and RNA supporting ribosome-associated quality control

scientific article published in Nature Communications

Mps1Mph1 Kinase Phosphorylates Mad3 to Inhibit Cdc20Slp1-APC/C and Maintain Spindle Checkpoint Arrests

scientific article published on 16 February 2016

Mto2 multisite phosphorylation inactivates non-spindle microtubule nucleation complexes during mitosis

scientific article

Multi-Protein Complexes Studied by Mass Spectrometry.

scientific article

Multiclassifier combinatorial proteomics of organelle shadows at the example of mitochondria in chromatin data

scientific article

Multiomics Analysis Provides Insight into the Laboratory Evolution of Escherichia coli toward the Metabolic Usage of Fluorinated Indoles

scientific article published in 2020

Multiple RNA interactions position Mrd1 at the site of the small subunit pseudoknot within the 90S pre-ribosome

scientific article

Multiple molecular architectures of the eye lens chaperone  B-crystallin elucidated by a triple hybrid approach

scientific article

Nano Random Forests to mine protein complexes and their relationships in quantitative proteomics data

scientific article

Nano Random Forests to mine protein complexes and their relationships in quantitative proteomics data

Nascent chromatin capture proteomics determines chromatin dynamics during DNA replication and identifies unknown fork components

scientific article

Naturstoffanalytik unter der Lupe

Noncovalently Associated Peptides Observed during Liquid Chromatography-Mass Spectrometry and Their Effect on Cross-Link Analyses

scientific article published on 01 February 2019

Nop9 is an RNA binding protein present in pre-40S ribosomes and required for 18S rRNA synthesis in yeast

scientific article

On the Reproducibility of Label-Free Quantitative Cross-Linking/Mass Spectrometry.

scientific article published on 18 December 2017

Optimized Fragmentation Regime for Diazirine Photo-Cross-Linked Peptides

scientific article published on 25 July 2016

Optimizing the Parameters Governing the Fragmentation of Cross-Linked Peptides in a Tribrid Mass Spectrometer

scientific article published on 12 April 2017

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

scientific article published on 18 June 2015

Peptide Identification Using Vectors of Small Fragment Ions

scientific article published on 01 May 2005

Peptide Retention in Hydrophilic Strong Anion Exchange Chromatography is Driven by Charged and Aromatic Residues.

scientific article published on 12 March 2018

Pervasive coexpression of spatially proximal genes is buffered at the protein level.

scientific article published on 23 August 2017

Phosphodependent recruitment of Bub1 and Bub3 to Spc7/KNL1 by Mph1 kinase maintains the spindle checkpoint.

scientific article published on 19 April 2012

Phosphorylation of SOS1 on tyrosine 1196 promotes its RAC GEF activity and contributes to BCR-ABL leukemogenesis.

scientific article published on 18 August 2017

Pom1 regulates the assembly of Cdr2-Mid1 cortical nodes for robust spatial control of cytokinesis

scientific article

Posttranscriptional Regulation of 14q32 MicroRNAs by the CIRBP and HADHB during Vascular Regeneration after Ischemia

scientific article published on 06 December 2018

Prdm5 regulates collagen gene transcription by association with RNA polymerase II in developing bone

scientific article

Pre-40S ribosome biogenesis factor Tsr1 is an inactive structural mimic of translational GTPases

scientific article published on 2 June 2016

Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly

scientific article (publication date: 11 October 2001)

Protein Dynamics in Solution by Quantitative Crosslinking/Mass Spectrometry

article

Protein Tertiary Structure by Crosslinking/Mass Spectrometry

scientific article published on 30 January 2018

Protein abundance profiling of the Escherichia coli cytosol

scientific article

Proteome Analysis of Human Neutrophil Granulocytes From Patients With Monogenic Disease Using Data-independent Acquisition

scientific article published on 10 January 2019

Proteomic analysis of human blood serum using peptide library beads

scientific article

Proteomic analysis of pancreatic ductal carcinoma cells after combined treatment with gemcitabine and trichostatin A.

scientific article published in November 2005

Proteomic profiling of PrP27-30-enriched preparations extracted from the brain of hamsters with experimental scrapie

scientific article published in August 2009

Proteomics Analysis with a Nano Random Forest Approach Reveals Novel Functional Interactions Regulated by SMC Complexes on Mitotic Chromosomes

scientific article published on 26 May 2016

Proteomics Using Protease Alternatives to Trypsin Benefits from Sequential Digestion with Trypsin

scientific article published on 06 July 2020

Proteomics of a fuzzy organelle: interphase chromatin

scientific article published on 16 February 2014

Proteomics of isolated mitotic chromosomes identifies the kinetochore protein Ska3/Rama1.

scientific article published on January 2010

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

scientific article (publication date: 2007)

Purification and characterization of the 1.0 MDa CCR4-NOT complex identifies two novel components of the complex

scientific article

Purification of native survival of motor neurons complexes and identification of Gemin6 as a novel component

scientific article

Purified Smc5/6 Complex Exhibits DNA Substrate Recognition and Compaction

scientific article published on 04 December 2020

Quantitative Cross-linking/Mass Spectrometry Using Isotope-labeled Cross-linkers and MaxQuant

scientific article

Quantitative Photo-crosslinking Mass Spectrometry Revealing Protein Structure Response to Environmental Changes

scientific article published on 05 July 2019

Quantitative Proteomics of the Mitotic Chromosome Scaffold Reveals the Association of BAZ1B with Chromosomal Axes

scientific article published on 28 September 2018

Quantitative cross-linking/mass spectrometry reveals subtle protein conformational changes

scientific article

Quantitative cross-linking/mass spectrometry to elucidate structural changes in proteins and their complexes

scientific article published on 01 January 2019

Quantitative cross-linking/mass spectrometry using isotope-labelled cross-linkers ⬇️

scientific article published on March 26, 2013

Quirks of Error Estimation in Cross-Linking/Mass Spectrometry

scientific article published on 07 March 2017

RBP2 belongs to a family of demethylases, specific for tri-and dimethylated lysine 4 on histone 3

scientific article

REST-mediated recruitment of polycomb repressor complexes in mammalian cells

scientific article

RNA polymerase II stalling at pre-mRNA splice sites is enforced by ubiquitination of the catalytic subunit

scientific article published on 13 October 2017

RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination

scientific article published on 10 October 2017

RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination.

scientific article published on 8 November 2017

Raf1 Is a DCAF for the Rik1 DDB1-like protein and has separable roles in siRNA generation and chromatin modification

scientific article

Reconstitution of Microtubule Nucleation In Vitro Reveals Novel Roles for Mzt1

scientific article published on 01 July 2019

Reductional Meiosis I Chromosome Segregation Is Established by Coordination of Key Meiotic Kinases

scientific article published on 25 April 2019

Reliable identification of protein-protein interactions by crosslinking mass spectrometry

scientific article published on 11 June 2021

Repo-Man coordinates chromosomal reorganization with nuclear envelope reassembly during mitotic exit.

scientific article

Repo-Man/PP1 regulates heterochromatin formation in interphase.

scientific article published on 16 January 2017

Repression of RNA polymerase by the archaeo-viral regulator ORF145/RIP.

scientific article

Retention time prediction using neural networks increases identifications in crosslinking mass spectrometry

scientific article published on 28 May 2021

Rett syndrome mutations abolish the interaction of MeCP2 with the NCoR/SMRT co-repressor

scientific journal article

Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits

scientific article published on 7 October 2014

Rrp5 binding at multiple sites coordinates pre-rRNA processing and assembly

scientific article

SCF(Cyclin F)-dependent degradation of CDC6 suppresses DNA re-replication

scientific article published on 28 January 2016

SPF30 is an essential human splicing factor required for assembly of the U4/U5/U6 tri-small nuclear ribonucleoprotein into the spliceosome

scientific article

SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation

scientific article published on 16 July 2020

Self-made frits for nanoscale columns in proteomics

scientific article published on 01 October 2005

Sequence tag scanning: a new explorative strategy for recognition of unexpected protein alterations by nanoelectrospray ionization-tandem mass spectrometry

scientific article

Sequential Digestion with Trypsin and Elastase in Cross-Linking Mass Spectrometry

scientific article published on 13 March 2019

Sequential digestion with Trypsin and Elastase in cross-linking/mass spectrometry

Serum Albumin Domain Structures in Human Blood Serum by Mass Spectrometry and Computational Biology

scientific article

Shugoshin biases chromosomes for biorientation through condensin recruitment to the pericentromere

scientific article published on 4 February 2014

Shulin packages axonemal outer dynein arms for ciliary targeting

scientific article published in 2021

Silencing mediated by the Schizosaccharomyces pombe HIRA complex is dependent upon the Hpc2-like protein, Hip4.

scientific article

Sister kinetochores are mechanically fused during meiosis I in yeast.

scientific article

Ska3 Ensures Timely Mitotic Progression by Interacting Directly With Microtubules and Ska1 Microtubule Binding Domain.

scientific article

Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy

scientific article published on 4 January 2018

Splicing factors facilitate RNAi-directed silencing in fission yeast

scientific article

Spot overlapping in two-dimensional maps: a serious problem ignored for much too long

scientific article published in June 2005

Stc1: a critical link between RNAi and chromatin modification required for heterochromatin integrity.

scientific article

Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics

scientific article (publication date: February 2003)

Stress-Induced Translation Inhibition through Rapid Displacement of Scanning Initiation Factors

scientific article published on 02 October 2020

Structural Analysis of Multiprotein Complexes by Cross-linking, Mass Spectrometry, and Database Searching

article

Structural basis for centromere maintenance by Drosophila CENP-A chaperone CAL1

scientific article published on 05 March 2020

Structural basis for microtubule recognition by the human kinetochore Ska complex

scientific article

Structural basis of Mcm2-7 replicative helicase loading by ORC-Cdc6 and Cdt1.

scientific article published on 13 February 2017

Structural mechanism of CRL4‐instructed STAT2 degradation via a novel cytomegaloviral DCAF receptor

scientific article published in 2023

Structure of Complement C3(H2O) Revealed By Quantitative Cross-Linking/Mass Spectrometry And Modeling

scientific article published on June 2016

Structure of hibernating ribosomes studied by cryoelectron tomography in vitro and in situ

scientific article

Structure of the Fanconi anaemia monoubiquitin ligase complex

scientific article published on 30 October 2019

Structure of the native γ-tubulin ring complex capping spindle microtubules

scientific article published in 2024

Substrate specificity of the TRAMP nuclear surveillance complexes

scientific article published on 19 June 2020

Supraspliceosomes at defined functional states portray the pre-assembled nature of the pre-mRNA processing machine in the cell nucleus

scientific article

TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity

scientific journal article

TEX15 is an essential executor of MIWI2-directed transposon DNA methylation and silencing

scientific article published on 27 July 2020

The Arabidopsis epigenetic regulator ICU11 as an accessory protein of Polycomb Repressive Complex 2

scientific article published on 29 June 2020

The C-terminal helix of BubR1 is essential for CENP-E-dependent chromosome alignment

scientific article published on 14 July 2020

The NOT proteins are part of the CCR4 transcriptional complex and affect gene expression both positively and negatively

scientific article published on February 1998

The Proteomic Landscape of Centromeric Chromatin Reveals an Essential Role for the Ctf19CCAN Complex in Meiotic Kinetochore Assembly

scientific article published on 31 October 2020

The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes ⬇️

scientific article published on October 26, 2010

The depolymerase activity of MCAK shows a graded response to Aurora B kinase phosphorylation through allosteric regulation

scientific article published on 14 January 2019

The domesticated transposase ALP2 mediates formation of a novel Polycomb protein complex by direct interaction with MSI1, a core subunit of Polycomb Repressive Complex 2 (PRC2)

scientific article published on 28 May 2020

The histone lysine demethylase JMJD3/KDM6B is recruited to p53 bound promoters and enhancer elements in a p53 dependent manner

scientific article

The human proteome co-regulation map reveals functional relationships between proteins

The kinetochore module Okp1/Ame1 is a reader for N-terminal modifications on the centromeric histone Cse4

scientific article published on 02 November 2018

The methylosome, a 20S complex containing JBP1 and pICln, produces dimethylarginine-modified Sm proteins

scientific article

The mitosis and neurodevelopment proteins NDE1 and NDEL1 form dimers, tetramers, and polymers with a folded back structure in solution.

scientific article

The molecular basis of monopolin recruitment to the kinetochore

scientific article published on 30 April 2019

The mzIdentML data standard version 1.2, supporting advances in proteome informatics.

scientific article

The phospho-docking protein 14-3-3 regulates microtubule-associated proteins in oocytes including the chromosomal passenger Borealin

scientific article published on 06 June 2022

The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics

scientific article

The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3

scientific article (publication date: 20 July 2006)

The structure and oxidation of the eye lens chaperone αA-crystallin

scientific article published on 02 December 2019

The structure of human thyroglobulin

scientific article published on 05 February 2020

The δ subunit and NTPase HelD institute a two-pronged mechanism for RNA polymerase recycling

scientific article published on 18 December 2020

Three-dimensional topology of the SMC2/SMC4 subcomplex from chicken condensin I revealed by cross-linking and molecular modelling

scientific article

Tissue-specific control of brain-enriched miR-7 biogenesis

scientific article published on January 2013

Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry

scientific article published on 12 October 2020

Transposon-driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution

scientific article

Trim25 Is an RNA-Specific Activator of Lin28a/TuT4-Mediated Uridylation

scientific article published on November 2014

Tumor suppressor ASXL1 is essential for the activation of INK4B expression in response to oncogene activity and anti-proliferative signals

scientific article

UTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development

scientific article (publication date: 11 October 2007)

Ultraviolet Photodissociation of tryptic peptide backbones at 213 nm

scientific article published on 30 April 2020

Understudied proteins: opportunities and challenges for functional proteomics

scientific article published on 9 May 2022

Unrip is a component of SMN complexes active in snRNP assembly

scientific article (publication date: 25 April 2005)

What does it mean to identify a protein in proteomics?

scientific article

When less can yield more - Computational preprocessing of MS/MS spectra for peptide identification

scientific article

Whole-proteome genetic analysis of dependencies in assembly of a vertebrate kinetochore.

scientific article published on 14 December 2015

eIF4A3 is a novel component of the exon junction complex

scientific article

miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs ⬇️

scientific article

treeClust improves protein co-regulation analysis due to robust selectivity for close linear relationships

xiNET: cross-link network maps with residue resolution

scientific article

xiSPEC: web-based visualization, analysis and sharing of proteomics data.

scientific article published in July 2018

Paulina is supported by:

About Paulina

Help