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List of works by David C. Richardson

1186. Prevalence of Carbapenemase-Producing Enterobacteriaceae (CPE) in Hospital Drains in Southern Ontario

1205. Emergence of Carbapenemase Producing Enterobacteriaceae in South Central Ontario, Canada

article

2165. Risk Factors for CPE Colonization in Household Contacts of CPE Colonized/Infected Patients

2716. Persistence of 13-Valent Pneumococcal Conjugate Vaccine (PCV13) Serotypes in Invasive Pneumococcal Disease in Adults in Southern Ontario Canada Despite Routine Pediatric Vaccination

501. Risk of Infection in Persons Colonized with Carbapenemase-Producing Enterobacteriales (CPE) in Ontario, Canada

512. Healthcare-Acquired (HA) Carbapenemase-Producing Enterobacteriales (CPE) in Southern Ontario, Canada: To Whom Are We Transmitting CPE?

790Predictors of Influenza Infection in Older Adults Presenting to Emergency Departments (EDs) in Toronto, Canada.

scientific article

992. 2016–2017 Influenza Burden of Disease and End-of-Season Influenza Vaccine Effectiveness (VE) Estimates for Preventing Influenza-Related Hospitalization Among Canadian Adults: An Analysis From the Canadian Immunization Research Network (CIRN) S

article

A high resolution structure of an inhibitor complex of the extracellular nuclease of Staphylococcus aureus. I. Experimental procedures and chain tracing

scientific article

A test of enhancing model accuracy in high-throughput crystallography

scientific article

Acute Myocardial Infarction after Laboratory-Confirmed Influenza Infection

scientific article published in January 2018

Advances, interactions, and future developments in the CNS, Phenix, and Rosetta structural biology software systems

scientific article published on 28 February 2013

Algorithm for backrub motions in protein design

scientific article published on July 2008

Alternate states of proteins revealed by detailed energy landscape mapping

scientific article

Amino acid preferences for specific locations at the ends of alpha helices

scientific article (publication date: 17 June 1988)

An algorithm for smoothly tessellating beta-sheet structures in proteins

scientific article

An illustrated museum of protein structures

scientific article

Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation

scientific article (publication date: 29 January 1999)

Assessment of Molecular Construction in Undergraduate Biochemistry

article

Assessment of detailed conformations suggests strategies for improving cryoEM models: Helix at lower resolution, ensembles, pre-refinement fixups, and validation at multi-residue length scale

Autofix for backward-fit sidechains: using MolProbity and real-space refinement to put misfits in their place

scientific article

Away from the edge II: in-house Se-SAS phasing with chromium radiation

scientific article published on 24 June 2005

Biophysical highlights from 54 years of macromolecular crystallography

scientific article (publication date: 4 February 2014)

Broad Analysis of Vicinal Disulfides: Occurrences, Conformations with Cis or with Trans Peptides, and Functional Roles Including Sugar Binding

scientific article published on 20 March 2017

COVID-19 symptoms at hospital admission vary with age and sex: results from the ISARIC prospective multinational observational study

scientific article

Can routinely collected laboratory and health administrative data be used to assess influenza vaccine effectiveness? Assessing the validity of the Flu and Other Respiratory Viruses Research (FOREVER) Cohort

scientific article published on 17 June 2019

Characteristics and Outcomes of Young Children Hospitalized with Laboratory-Confirmed Influenza or Respiratory Syncytial Virus in Ontario, Canada, 2009-2014

article

Characterization of methicillin-resistant Staphylococcus aureus isolates from patients with persistent or recurrent bacteremia

scientific article

Characterization of multiple NDM-1-producing Enterobacteriaceae isolates from the same patient

scientific article published on 6 April 2015

Communicating with the public: opportunities and rewards for individual ecologists

article

Community- and Healthcare-Associated Methicillin-Resistant Staphylococcus aureus Strains: An Investigation Into Household Transmission, Risk Factors, and Environmental Contamination.

scientific article published on 8 November 2016

Computational Methods for RNA Structure Validation and Improvement

scientific article

Crystallographic model validation: from diagnosis to healing

scientific article

De novo design, expression, and characterization of Felix: a four-helix bundle protein of native-like sequence

scientific article published in August 1990

Detection of an Influenza B Virus Strain with Reduced Susceptibility to Neuraminidase Inhibitor Drugs ⬇️

scientific article published on September 7, 2011

Dissemination of Verona Integron-encoded Metallo-β-lactamase among clinical and environmental Enterobacteriaceae isolates in Ontario, Canada

scientific article published on 29 October 2020

Doing Molecular Biophysics: Finding, Naming, and Picturing Signal Within Complexity ⬇️

scientific article published on February 28, 2013

Draft Genome Sequences of Two "Haemophilus quentini" Isolates Recovered from Two Different Patients' Blood Cultures

scientific article

Ecosystem effects of a tropical cyclone on a network of lakes in northeastern North America

scientific article

Effectiveness of Influenza Vaccination on Hospitalizations and Risk Factors for Severe Outcomes in Hospitalized Patients With COPD

scientific article published on 01 January 2019

Electrostatic recognition between superoxide and copper, zinc superoxide dismutase

scientific article published in November 1983

Emergence of Carbapenemase-Producing Enterobacteriaceae, South-Central Ontario, Canada

article

Epidemiology of Influenza Viruses in Canada over the 2011–2012 to 2013–2014 Seasons: A Study from the Serious Outcomes Surveillance (SOS) Network of the Canadian Immunization Research Network (CIRN).

scientific article published on 4 October 2017

Evaluation of a rapid PCR assay for diagnosis of meningococcal meningitis

scientific article published on August 2003

Evaluation of susceptibility testing to detect fluoroquinolone resistance mechanisms in Streptococcus pneumoniae

scientific article

Evaluation of the Makromed dipstick assay versus PCR for diagnosis of Plasmodium falciparum malaria in returned travelers

scientific article

Frailty Hinders Recovery From Acute Respiratory Illness in Older Adults

Graphical tools for macromolecular crystallography in PHENIX

scientific article

Helix lap-joints as ion-binding sites: DNA-binding motifs and Ca-binding "EF hands" are related by charge and sequence reversal

scientific article published in January 1988

High prevalence of ST131 isolates producing CTX-M-15 and CTX-M-14 among extended-spectrum-beta-lactamase-producing Escherichia coli isolates from Canada

scientific article published on 4 January 2010

Household Transmission of Carbapenemase-Producing Enterobacterales (CPE) in Ontario, Canada

scientific article published on 01 September 2020

Impact of Antivirals in the Prevention of Serious Outcomes Associated with Influenza in Hospitalized Canadian Adults: A Pooled Analysis from the Serious Outcomes Surveillance (SOS) Network of the Canadian Immunization Research Network (CIRN).

scientific article published on 4 October 2017

Impact of Prior Season Influenza Vaccination on Seasonal Influenza Vaccine Effectiveness: An Analysis over Four Consecutive Seasons from the Serious Outcomes Surveillance (SOS) Network of the Canadian Immunization Research Network (CIRN).

scientific article

Implementation of serological and molecular tools to inform COVID-19 patient management: protocol for the GENCOV prospective cohort study

publication published on 30 September 2021

Influenza Vaccine Effectiveness Among Patients With Cancer: A Population-Based Study Using Health Administrative and Laboratory Testing Data From Ontario, Canada

scientific article published on 29 August 2019

Influenza Vaccine Effectiveness in Preventing Hospitalizations in Older Patients With Chronic Obstructive Pulmonary Disease

scientific article published on 01 January 2020

Influenza vaccine effectiveness against all-cause mortality following laboratory-confirmed influenza in older adults, 2010-2011 to 2015-2016 seasons in Ontario, Canada

scientific article published on 23 December 2020

Influenza vaccine effectiveness against influenza-related hospitalization during a season with mixed outbreaks of four influenza viruses: a test-negative case-control study in adults in Canada

scientific article published on 29 December 2017

Influenza vaccine effectiveness to prevent influenza-related hospitalizations and serious outcomes in Canadian adults over the 2011/12 through 2013/14 influenza seasons: A pooled analysis from the Canadian Immunization Research Network (CIRN) Seriou

scientific article published on 13 March 2018

Interim estimates of 2013/14 influenza clinical severity and vaccine effectiveness in the prevention of laboratory-confirmed influenza-related hospitalisation, Canada, February 2014.

scientific article published on 6 March 2014

KING (Kinemage, Next Generation): a versatile interactive molecular and scientific visualization program

scientific article

KinImmerse: Macromolecular VR for NMR ensembles

scientific article

Kinemages--simple macromolecular graphics for interactive teaching and publication

scientific article published in March 1994

MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes

scientific article (publication date: July 2004)

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

scientific article published on 02 October 2019

Manganese superoxide dismutases from Escherichia coli and from yeast mitochondria: preliminary x-ray crystallographic studies

scientific article published on August 5, 1976

Mismodeled purines: implicit alternates and hidden Hoogsteens

scientific article published on 2 October 2017

Model validation: local diagnosis, correction and when to quit.

scientific article published in February 2018

MolProbity: More and better reference data for improved all-atom structure validation

scientific article published on 25 October 2017

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

scientific article

MolProbity: all-atom structure validation for macromolecular crystallography

scientific article

Molprobity's ultimate rotamer-library distributions for model validation

scientific article

Multiscale conformational heterogeneity in staphylococcal protein a: possible determinant of functional plasticity

scientific article

Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation

scientific article

New Delhi metallo-beta-lactamase, Ontario, Canada.

scientific article published on February 2011

New tools and data for improving structures, using all-atom contacts

scientific article published in January 2003

New tools in MolProbity validation: CaBLAM for CryoEM backbone, UnDowser to rethink "waters," and NGL Viewer to recapture online 3D graphics

scientific article published on 10 December 2019

New tools provide a second look at HDV ribozyme structure, dynamics and cleavage

scientific article

OSPREY: protein design with ensembles, flexibility, and provable algorithms

scientific article

Outbreak of carbapenem-resistant enterobacteriaceae containing blaNDM-1, Ontario, Canada.

scientific article published on 20 September 2012

PHENIX: a comprehensive Python-based system for macromolecular structure solution

scientific article

Pneumococcal vaccination programs and the burden of invasive pneumococcal disease in Ontario, Canada, 1995-2011.

scientific article published on 5 October 2013

Pre-and post-pandemic trends in antiviral use in hospitalized patients with laboratory-confirmed influenza: 2004/05-2013/14, Toronto, Canada.

scientific article

Predictors of influenza among older adults in the emergency department

scientific article

Preliminary X-ray diffraction studies of acyl carrier protein from Escherichia coli

scientific article published in April 1985

Puzzle pieces defined: locating common packing units in tertiary protein contacts ⬇️

scientific article published on January 1, 1996

RNA backbone is rotameric ⬇️

scientific article published on November 11, 2003

RNA backbone rotamers--finding your way in seven dimensions

scientific article published in June 2005

RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

scientific article

Recent developments in phasing and structure refinement for macromolecular crystallography

scientific article published on 21 August 2009

Resource utilization and cost of influenza requiring hospitalization in Canadian adults: A study from the serious outcomes surveillance network of the Canadian Immunization Research Network

scientific article published on 10 November 2017

Stream restoration strategies for reducing river nitrogen loads

scientific article published in 2008

Structural and transcriptional analyses of a purine nucleotide-binding protein from Pyrococcus furiosus: a component of a novel, membrane-bound multiprotein complex unique to this hyperthermophilic archaeon

scientific article published on March 2007

Structural genomics of Pyrococcus furiosus: X-ray crystallography reveals 3D domain swapping in rubrerythrin

scientific article

Structure and mechanism of copper, zinc superoxide dismutase ⬇️

scientific article published on November 17, 1983

Structure of the hypothetical protein PF0899 fromPyrococcus furiosusat 1.85 Å resolution

scientific article

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

scientific article (publication date: 15 February 2003)

Studying and polishing the PDB's macromolecules

scientific article

Survival amid the thorns: progress and pitfalls in today's HIV care

scientific article published in January 2006

SymROP: ROP protein with identical helices redesigned by all-atom contact analysis and molecular dynamics.

scientific article

Teaching and Assessing Three-Dimensional Molecular Literacy in Undergraduate Biochemistry

scientific article published in May 2002

Teaching molecular 3-D literacy

scientific article published in January 2002

The Impact of Prior Season Vaccination on Subsequent Influenza Vaccine Effectiveness to Prevent Influenza-related Hospitalizations Over 4 Influenza Seasons in Canada

scientific article published on 01 August 2019

The Importance of Frailty in the Assessment of Influenza Vaccine Effectiveness Against Influenza-Related Hospitalization in Elderly People

article

The Phenix software for automated determination of macromolecular structures

scientific article (publication date: September 2011)

The backrub motion: how protein backbone shrugs when a sidechain dances

scientific article

The characteristics of NDM-producing Klebsiella pneumoniae from Canada

scientific article published in October 2011

The extracellular nuclease of Staphylococcus aureus: structures of the native enzyme and an enzyme-inhibitor complex at 4 A resolution

scientific article

The high-throughput protein-to-structure pipeline at SECSG.

scientific article

The impact of repeated vaccination using 10-year vaccination history on protection against influenza in older adults: a test-negative design study across the 2010/11 to 2015/16 influenza seasons in Ontario, Canada

scientific article published on 01 January 2020

The other 90% of the protein: assessment beyond the Calphas for CASP8 template-based and high-accuracy models

scientific article

The penultimate rotamer library

scientific article (publication date: 15 August 2000)

The penultimate rotamer library

scholarly article by Simon C. Lovell published in January 2000

The role of local backrub motions in evolved and designed mutations

scientific article

The statistical conformation of a highly flexible protein: small-angle X-ray scattering of S. aureus protein A.

scientific article

Tropheryma whippelii as a cause of afebrile culture-negative endocarditis: the evolving spectrum of Whipple's disease

scientific article

Two Crystal Forms of Bovine Superoxide Dismutase ⬇️

scientific article published on October 10, 1972

Two nursing home outbreaks of respiratory infection with Legionella sainthelensi

scientific article

Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution

scientific article published on 16 March 2012

VIEW

scientific article published in 1993

Vaccine effectiveness against laboratory-confirmed influenza hospitalizations among young children during the 2010-11 to 2013-14 influenza seasons in Ontario, Canada

scientific article published on 17 November 2017

Validation of the Seegene RV15 multiplex PCR for the detection of influenza A subtypes and influenza B lineages during national influenza surveillance in hospitalized adults

scientific article published on 28 June 2019

Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms

scientific article

phenix.model_vs_data: a high-level tool for the calculation of crystallographic model and data statistics

scientific article

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