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List of works by Claudine Médigue

"Candidatus Cloacamonas acidaminovorans": genome sequence reconstruction provides a first glimpse of a new bacterial division

scientific article published on February 2008

16S rRNA and As-Related Functional Diversity: Contrasting Fingerprints in Arsenic-Rich Sediments from an Acid Mine Drainage

scientific article published on 16 January 2015

A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1.

scientific article published on 4 March 2008

A genomic island of the pathogen Leptospira interrogans serovar Lai can excise from its chromosome

scientific article published on 21 November 2006

A horizontally acquired filamentous phage contributes to the pathogenicity of the plague bacillus

scientific article published on February 2007

A new O-antigen gene cluster has a key role in the virulence of the Escherichia coli meningitis clone O45:K1:H7

scientific article

AMIGene: Annotation of MIcrobial Genes

scientific article

Advances in environmental genomics: towards an integrated view of micro-organisms and ecosystems

scientific article published on February 2008

Annotation, comparison and databases for hundreds of bacterial genomes

scientific article published on 06 October 2007

Attenuated virulence and genomic reductive evolution in the entomopathogenic bacterial symbiont species, Xenorhabdus poinarii

scientific article

Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant

scientific article published on 28 May 2015

Characterization of a P1-like bacteriophage carrying an SHV-2 extended-spectrum β-lactamase from an Escherichia coli strain

scientific article published on 18 August 2014

Comparative Genomics between Two Xenorhabdus bovienii Strains Highlights Differential Evolutionary Scenarios within an Entomopathogenic Bacterial Species

scientific article published on 14 January 2016

Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires' disease

scientific article

Comparative analysis of Acinetobacters: three genomes for three lifestyles

scientific article published on 19 March 2008

Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms

scientific article published on 22 January 2014

Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits

scientific article published on 06 June 2013

Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies

scientific article

Complete Genome Sequence of Bacillus methylotrophicus Strain B25, a Potential Plant Growth-Promoting Rhizobacterium

scientific article published on 10 March 2016

Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations

scientific article (publication date: June 2009)

Complete genome sequence of Rickettsia slovaca, the agent of tick-borne lymphadenitis

scientific article published on March 2012

Complete genome sequence of the chloromethane-degrading Hyphomicrobium sp. strain MC1

scientific article

Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila

scientific article

Complete genome sequences of six strains of the genus Methylobacterium

scientific article

Complete nucleotide sequence of plasmid pTN48, encoding the CTX-M-14 extended-spectrum β-lactamase from an Escherichia coli O102-ST405 strain

scientific article

Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria

scientific article

Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125

scientific article

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

scientific article

Delineation and analysis of chromosomal regions specifying Yersinia pestis

scientific article

Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC.

scientific article

Draft Genome Sequence of Carnobacterium divergens V41, a Bacteriocin-Producing Strain

scientific article published on 13 October 2016

Draft genome sequence of the volcano-inhabiting thermoacidophilic methanotroph Methylacidiphilum fumariolicum strain SolV.

scientific article

Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data

scientific article

Experimental evolution of a plant pathogen into a legume symbiont

scientific article

Experimental evolution of nodule intracellular infection in legume symbionts ⬇️

scientific article published on February 21, 2013

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later

scientific article

From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma

scientific article

Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album Strain BG8.

scientific article published on March 2013

Genome Sequence of the Sulfate-Reducing Bacterium Desulfotomaculum hydrothermale Lam5(T)

scientific article published on 24 January 2013

Genome features of the endophytic actinobacterium Micromonospora lupini strain Lupac 08: on the process of adaptation to an endophytic life style?

scientific article

Genome sequence of Blastococcus saxobsidens DD2, a stone-inhabiting bacterium

scientific article published on May 2012

Genome sequence of Methyloversatilis universalis FAM5T, a methylotrophic representative of the order Rhodocyclales

scientific article

Genome sequence of Vibrio splendidus: an abundant planctonic marine species with a large genotypic diversity

scientific article

Genome sequence of radiation-resistant Modestobacter marinus strain BC501, a representative actinobacterium that thrives on calcareous stone surfaces

scientific article published on September 2012

Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96

scientific article

Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia

scientific article

Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242).

scientific article

Genome sequence of the obligate methanotroph Methylosinus trichosporium strain OB3b

scientific article

Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis

scientific article

Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence

scientific article

Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

scientific article published on 06 January 2013

Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200.

scientific article published on 2 April 2016

Genomic, proteomic, and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities

scientific article

Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression

scientific article

Integration of data and methods for genome analysis

scientific article

Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli

scientific article

Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26

scientific article published on January 2013

MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes

scientific article

MaGe: a microbial genome annotation system supported by synteny results

scientific article

Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics

scientific article

Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources

scientific article published on 18 May 2009

MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes

scientific article

MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

scientific article

Mutation Rate Inferred From Synonymous Substitutions in a Long-Term Evolution Experiment With Escherichia coli

scientific article

Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load

scientific article (publication date: 2 January 2013)

NeMeSys: a biological resource for narrowing the gap between sequence and function in the human pathogen Neisseria meningitidis

scientific article (publication date: 2009)

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

scientific article published in January 2009

Parallel evolution of a type IV secretion system in radiating lineages of the host-restricted bacterial pathogen Bartonella

scientific article (publication date: 2011)

Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis

scientific article

Profiling the orphan enzymes

scientific article

Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes

scientific article

Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv

scientific article

Sequencing of K60, type strain of the major plant pathogen Ralstonia solanacearum

scientific article

Small variable segments constitute a major type of diversity of bacterial genomes at the species level

scientific article

Structure, function, and evolution of the Thiomonas spp. genome

scientific article

Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment

scientific article

Tempo and mode of genome evolution in a 50,000-generation experiment

scientific article

The Genome Sequence of the Cyanobacterium Oscillatoria sp. PCC 6506 Reveals Several Gene Clusters Responsible for the Biosynthesis of Toxins and Secondary Metabolites ⬇️

scientific article published on July 30, 2010

The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments

scientific article (publication date: 5 May 2010)

The entomopathogenic bacterial endosymbionts Xenorhabdus and Photorhabdus: convergent lifestyles from divergent genomes

scientific article published in 2011

The plasmid of Escherichia coli strain S88 (O45:K1:H7) that causes neonatal meningitis is closely related to avian pathogenic E. coli plasmids and is associated with high-level bacteremia in a neonatal rat meningitis model

scientific article published on 23 March 2009

The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis

scientific article

The secE gene of Helicobacter pylori

scientific article published on May 2002

Transcriptome analysis of Yersinia pestis in human plasma: an approach for discovering bacterial genes involved in septicaemic plague

scientific article published on September 2007

Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium

scientific article

Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus

scientific article

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