List of works - Valérie Barbe

Genome evolution in yeasts

scientific article

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

scientific article published in January 2009

Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

scientific article

The Medicago genome provides insight into the evolution of rhizobial symbioses

scientific article

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

scientific article

Comparative genomics of multidrug resistance in Acinetobacter baumannii

scientific article

Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome

scientific article

MaGe: a microbial genome annotation system supported by synteny results

scientific article

Comparative analysis of Acinetobacters: three genomes for three lifestyles

scientific article published on 19 March 2008

Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125

scientific article

Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus

scientific article

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later

scientific article

Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium

scientific article

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

scientific article

Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

scientific article published on 06 January 2013

Comparative genomics of protoploid Saccharomycetaceae

scientific article

Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources

scientific article published on 18 May 2009

Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome

scientific article

An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi

scientific article

Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila

scientific article

Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes

scientific article published on 10 June 2013

Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti

scientific article

Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti

scientific article published in March 2009

Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine

scientific article

Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia

scientific article

The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis

scientific article

Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence

scientific article

Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean

scientific article

Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments

scientific article published in December 2011

A tale of two oxidation states: bacterial colonization of arsenic-rich environments

scientific article

Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization

scientific article published on February 2012

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

scientific article

Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas

scientific article (publication date: October 2009)

The plasmid of Escherichia coli strain S88 (O45:K1:H7) that causes neonatal meningitis is closely related to avian pathogenic E. coli plasmids and is associated with high-level bacteremia in a neonatal rat meningitis model

scientific article published on 23 March 2009

Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence

scientific article

The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications

scientific article

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies

scientific article

The DNA sequence and analysis of human chromosome 14

scientific article (publication date: 6 February 2003)

A tribute to disorder in the genome of the bloom-forming freshwater cyanobacterium Microcystis aeruginosa

scientific article

Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens

scientific article

Structure, function, and evolution of the Thiomonas spp. genome

scientific article

Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat

scientific article published on 31 October 2011

Comparative analysis of Klebsiella pneumoniae genomes identifies a phospholipase D family protein as a novel virulence factor

scientific article

Population genomics supports baculoviruses as vectors of horizontal transfer of insect transposons

scientific article published on January 2014

Ralstonia syzygii, the Blood Disease Bacterium and some Asian R. solanacearum strains form a single genomic species despite divergent lifestyles

scientific article published in 2011

Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity

scientific article

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

scientific article

Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans DsijT.

scientific article

Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites

scientific article

Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective

scientific article

List of works by Valérie Barbe

Genome evolution in yeasts

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

The Medicago genome provides insight into the evolution of rhizobial symbioses

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

Comparative genomics of multidrug resistance in Acinetobacter baumannii

Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome

MaGe: a microbial genome annotation system supported by synteny results

Comparative analysis of Acinetobacters: three genomes for three lifestyles

Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125

Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later

Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

Comparative genomics of protoploid Saccharomycetaceae

Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources

Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome

An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi

Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila

Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes

Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti

Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti

Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine

Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia

The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis

Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence

Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean

Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments

A tale of two oxidation states: bacterial colonization of arsenic-rich environments

Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas

The plasmid of Escherichia coli strain S88 (O45:K1:H7) that causes neonatal meningitis is closely related to avian pathogenic E. coli plasmids and is associated with high-level bacteremia in a neonatal rat meningitis model

Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence

The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies

The DNA sequence and analysis of human chromosome 14

A tribute to disorder in the genome of the bloom-forming freshwater cyanobacterium Microcystis aeruginosa

Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens

Structure, function, and evolution of the Thiomonas spp. genome

Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat

Comparative analysis of Klebsiella pneumoniae genomes identifies a phospholipase D family protein as a novel virulence factor

Population genomics supports baculoviruses as vectors of horizontal transfer of insect transposons

Ralstonia syzygii, the Blood Disease Bacterium and some Asian R. solanacearum strains form a single genomic species despite divergent lifestyles

Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans DsijT.

Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites

Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective