List of works by Valérie Barbe

A new O-antigen gene cluster has a key role in the virulence of the Escherichia coli meningitis clone O45:K1:H7

scientific article

A new integrative conjugative element occurs in Mycoplasma agalactiae as chromosomal and free circular forms

scientific article

A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications

scientific article

A tale of two oxidation states: bacterial colonization of arsenic-rich environments

scientific article

A tribute to disorder in the genome of the bloom-forming freshwater cyanobacterium Microcystis aeruginosa

scientific article

AAC(3)-XI, a new aminoglycoside 3-N-acetyltransferase from Corynebacterium striatum

scientific article

Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas

scientific article published on 30 September 2015

Adaptive selection on bracovirus genomes drives the specialization of Cotesia parasitoid wasps

scientific article

Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti

scientific article published in March 2009

An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi

scientific article

Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments

scientific article published in December 2011

Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome

scientific article

Characterization of a P1-like bacteriophage carrying an SHV-2 extended-spectrum β-lactamase from an Escherichia coli strain

scientific article published on 18 August 2014

Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence

scientific article

Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes

scientific article

Comparative analysis of Acinetobacters: three genomes for three lifestyles

scientific article published on 19 March 2008

Comparative analysis of Klebsiella pneumoniae genomes identifies a phospholipase D family protein as a novel virulence factor

scientific article

Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity

scientific article

Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges

scientific article published on 23 December 2015

Comparative genomics of multidrug resistance in Acinetobacter baumannii

scientific article

Comparative genomics of protoploid Saccharomycetaceae

scientific article

Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine

scientific article

Complete DNA sequence of Kuraishia capsulata illustrates novel genomic features among budding yeasts (Saccharomycotina)

scientific article

Complete Genome Sequence of Mycoplasma mycoides subsp. mycoides T1/44, a Vaccine Strain against Contagious Bovine Pleuropneumonia

scientific article published on 14 April 2016

Complete Genome Sequence of the Piezophilic, Mesophilic, Sulfate-Reducing Bacterium Desulfovibrio hydrothermalis AM13(T.).

scientific article published on January 2013

Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites ⬇️

scientific article

Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum

scientific article published on 22 April 2011

Complete genome sequence of the chloromethane-degrading Hyphomicrobium sp. strain MC1

scientific article

Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila

scientific article

Complete genome sequence of the fish pathogen Flavobacterium branchiophilum

scientific article published on 16 September 2011

Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125

scientific article

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

scientific article

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

scientific article

Degeneration of the nonrecombining regions in the mating-type chromosomes of the anther-smut fungi

scientific article

Draft Genome Sequence of Propane- and Butane-Oxidizing Actinobacterium Rhodococcus ruber IEGM 231.

scientific article

Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat

scientific article published on 31 October 2011

EmbRS a new two-component system that inhibits biofilm formation and saves Rubrivivax gelatinosus from sinking

scientific article published on 21 March 2013

Evolutionary history of contagious bovine pleuropneumonia using next generation sequencing of Mycoplasma mycoides Subsp. mycoides "Small Colony"

scientific article

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later

scientific article

Gene amplification and functional diversification of melanocortin 4 receptor at an extremely polymorphic locus controlling sexual maturation in the platyfish

scientific article published on 27 September 2013

Genome Sequence of Azospirillum brasilense CBG497 and Comparative Analyses of Azospirillum Core and Accessory Genomes provide Insight into Niche Adaptation

scientific article published on 28 September 2012

Genome Sequence of Halomonas sp. Strain A3H3, Isolated from Arsenic-Rich Marine Sediments

scientific article published on 10 October 2013

Genome Sequence of Luminous Piezophile Photobacterium phosphoreum ANT-2200

scientific article published on 17 April 2014

Genome Sequence of Xanthomonas campestris pv. campestris Strain Xca5.

scientific article published on January 2013

Genome Sequence of the Sulfate-Reducing Bacterium Desulfotomaculum hydrothermale Lam5(T)

scientific article published on 24 January 2013

Genome evolution in yeasts

scientific article

Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides

scientific article

Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes

scientific article published on 10 June 2013

Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

scientific article

Genome sequence of Blastococcus saxobsidens DD2, a stone-inhabiting bacterium

scientific article published on May 2012

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads

scientific article

Genome sequence of radiation-resistant Modestobacter marinus strain BC501, a representative actinobacterium that thrives on calcareous stone surfaces

scientific article published on September 2012

Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia

scientific article

Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome

scientific article

Genome sequence of the marine bacterium Marinobacter hydrocarbonoclasticus SP17, which forms biofilms on hydrophobic organic compounds

scientific article published on July 2012

Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence

scientific article

Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

scientific article published on 06 January 2013

Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200.

scientific article published on 2 April 2016

Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean

scientific article

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

scientific article

Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels

scientific article

Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans DsijT.

scientific article

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies

scientific article

Intraspecific variability of the terminal inverted repeats of the linear chromosome of Streptomyces ambofaciens

scientific article

Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26

scientific article published on January 2013

Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas

scientific article (publication date: October 2009)

MaGe: a microbial genome annotation system supported by synteny results

scientific article

Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources

scientific article published on 18 May 2009

Microbial Degradation of a Recalcitrant Pesticide: Chlordecone

scientific article published on 20 December 2016

Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective

scientific article

Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus

scientific article

Occurrence, plasticity, and evolution of the vpma gene family, a genetic system devoted to high-frequency surface variation in Mycoplasma agalactiae

scientific article published on 17 April 2009

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

scientific article published in January 2009

Organization and evolution of transposable elements along the bread wheat chromosome 3B

scientific article

PCR-based identification of Klebsiella pneumoniae subsp. rhinoscleromatis, the agent of rhinoscleroma

scientific article

Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20).

scientific article published on 14 January 2016

Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization

scientific article published on February 2012

Population genomics supports baculoviruses as vectors of horizontal transfer of insect transposons

scientific article published on January 2014

Ralstonia syzygii, the Blood Disease Bacterium and some Asian R. solanacearum strains form a single genomic species despite divergent lifestyles

scientific article published in 2011

Reductive evolution in Streptococcus agalactiae and the emergence of a host adapted lineage

scientific article

Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti

scientific article

Small variable segments constitute a major type of diversity of bacterial genomes at the species level

scientific article

Structure, function, and evolution of the Thiomonas spp. genome

scientific article

The DNA sequence and analysis of human chromosome 14

scientific article (publication date: 6 February 2003)

The Medicago genome provides insight into the evolution of rhizobial symbioses

scientific article

The Nocardia cyriacigeorgica GUH-2 genome shows ongoing adaptation of an environmental Actinobacteria to a pathogen's lifestyle

scientific article

The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese

scientific article

The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest

scientific article

The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications

scientific article

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

scientific article

The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment

scientific article published in 2011

The first genomic and proteomic characterization of a deep-sea sulfate reducer: insights into the piezophilic lifestyle of Desulfovibrio piezophilus

scientific article

The plasmid of Escherichia coli strain S88 (O45:K1:H7) that causes neonatal meningitis is closely related to avian pathogenic E. coli plasmids and is associated with high-level bacteremia in a neonatal rat meningitis model

scientific article published on 23 March 2009

The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis

scientific article

Thiomonas sp. CB2 is able to degrade urea and promote toxic metal precipitation in acid mine drainage waters supplemented with urea

scientific article

Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens

scientific article

Two host clades, two bacterial arsenals: evolution through gene losses in facultative endosymbionts

scientific article

Ultra Deep Sequencing of a Baculovirus Population Reveals Widespread Genomic Variations

scientific article published on 7 July 2015

Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium

scientific article

Whole-genome sequence of Wolbachia strain wAlbB, an endosymbiont of tiger mosquito vector Aedes albopictus

scientific article published on April 2012

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