List of works - Arnaud Couloux

The Medicago genome provides insight into the evolution of rhizobial symbioses

scientific article

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea

scientific article

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

scientific article

Structural and functional partitioning of bread wheat chromosome 3B.

scientific article

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

scientific article

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography

scientific article (publication date: 2007)

Genome sequences of Escherichia coli B strains REL606 and BL21(DE3).

scientific article published on 26 September 2009

The genome sequence of the model ascomycete fungus Podospora anserina

scientific article

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

scientific article (publication date: July 2014)

The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution

scholarly article

Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces

scientific article published on 25 June 2010

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

scientific article

Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes

scientific article (publication date: 2012)

Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome

scientific article

An extreme case of plant-insect codiversification: figs and fig-pollinating wasps

scientific article

The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii

scientific article

Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean.

scientific article

Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat

scientific article published on 09 September 2008

Comparative genomics of emerging pathogens in the Candida glabrata clade

scientific article

Transcript profiling of poplar leaves upon infection with compatible and incompatible strains of the foliar rust Melampsora larici-populina

scientific article

Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements

scientific article (publication date: 27 April 2010)

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

scientific article

Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite

scientific article

The phylogeny and classification of caenophidian snakes inferred from seven nuclear protein-coding genes

scientific article

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

scientific article

Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas

scientific article (publication date: October 2009)

RNF213, a new nuclear marker for acanthomorph phylogeny

scientific article

The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications

scientific article

Evolution of the mitochondrial genome in mammals living at high altitude: new insights from a study of the tribe Caprini (Bovidae, Antilopinae).

scientific article published on 18 March 2009

A population genomics insight into the Mediterranean origins of wine yeast domestication

scientific article published on 6 August 2015

Haplowebs as a graphical tool for delimiting species: a revival of Doyle's "field for recombination" approach and its application to the coral genus Pocillopora in Clipperton

scientific article

Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat

scientific article published on 31 October 2011

Transcriptome of Aphanomyces euteiches: new oomycete putative pathogenicity factors and metabolic pathways

scientific article

Evolutionary Advantage Conferred by an Eukaryote-to-Eukaryote Gene Transfer Event in Wine Yeasts

scientific article published on 6 March 2015

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

scientific article

Patterns of genetic structure among Hawaiian corals of the genus Pocillopora yield clusters of individuals that are compatible with morphology

scientific article

Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact

scientific article published on 13 September 2010

New insights into the origin of the B genome of hexaploid wheat: evolutionary relationships at the SPA genomic region with the S genome of the diploid relative Aegilops speltoides

scientific article (publication date: 25 November 2008)

Molecular phylogenetics of Thecata (Hydrozoa, Cnidaria) reveals long-term maintenance of life history traits despite high frequency of recent character changes

scientific article published on 21 August 2009

The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants

scientific article

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

scientific article

High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane

article

Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes.

scientific article

Molecular phylogeny of the Herpestidae (Mammalia, Carnivora) with a special emphasis on the Asian Herpestes

scholarly article (2009)

Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges.

scientific article published on 25 September 2017

Did glacial advances during the Pleistocene influence differently the demographic histories of benthic and pelagic Antarctic shelf fishes?--Inferences from intraspecific mitochondrial and nuclear DNA sequence diversity

scientific article (publication date: 12 November 2007)

Molecular evidence for an Asian origin of monitor lizards followed by Tertiary dispersals to Africa and Australasia

scientific article

Comparative phylogeography of two sibling species of forest-dwelling rodent (Praomys rostratus and P. tullbergi) in West Africa: different reactions to past forest fragmentation

scientific article

Comprehensive sampling reveals circumpolarity and sympatry in seven mitochondrial lineages of the Southern Ocean crinoid species Promachocrinus kerguelensis (Echinodermata).

scientific article

Starting to unravel the toxoglossan knot: molecular phylogeny of the "turrids" (Neogastropoda: Conoidea)

scientific article

List of works by Arnaud Couloux

The Medicago genome provides insight into the evolution of rhizobial symbioses

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

Structural and functional partitioning of bread wheat chromosome 3B.

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography

Genome sequences of Escherichia coli B strains REL606 and BL21(DE3).

The genome sequence of the model ascomycete fungus Podospora anserina

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution

Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes

Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome

An extreme case of plant-insect codiversification: figs and fig-pollinating wasps

The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii

Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean.

Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat

Comparative genomics of emerging pathogens in the Candida glabrata clade

Transcript profiling of poplar leaves upon infection with compatible and incompatible strains of the foliar rust Melampsora larici-populina

Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite

The phylogeny and classification of caenophidian snakes inferred from seven nuclear protein-coding genes

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas

RNF213, a new nuclear marker for acanthomorph phylogeny

The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications

Evolution of the mitochondrial genome in mammals living at high altitude: new insights from a study of the tribe Caprini (Bovidae, Antilopinae).

A population genomics insight into the Mediterranean origins of wine yeast domestication

Haplowebs as a graphical tool for delimiting species: a revival of Doyle's "field for recombination" approach and its application to the coral genus Pocillopora in Clipperton

Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat

Transcriptome of Aphanomyces euteiches: new oomycete putative pathogenicity factors and metabolic pathways

Evolutionary Advantage Conferred by an Eukaryote-to-Eukaryote Gene Transfer Event in Wine Yeasts

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

Patterns of genetic structure among Hawaiian corals of the genus Pocillopora yield clusters of individuals that are compatible with morphology

Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact

New insights into the origin of the B genome of hexaploid wheat: evolutionary relationships at the SPA genomic region with the S genome of the diploid relative Aegilops speltoides

Molecular phylogenetics of Thecata (Hydrozoa, Cnidaria) reveals long-term maintenance of life history traits despite high frequency of recent character changes

The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane

Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes.

Molecular phylogeny of the Herpestidae (Mammalia, Carnivora) with a special emphasis on the Asian Herpestes

Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges.

Did glacial advances during the Pleistocene influence differently the demographic histories of benthic and pelagic Antarctic shelf fishes?--Inferences from intraspecific mitochondrial and nuclear DNA sequence diversity

Molecular evidence for an Asian origin of monitor lizards followed by Tertiary dispersals to Africa and Australasia

Comparative phylogeography of two sibling species of forest-dwelling rodent (Praomys rostratus and P. tullbergi) in West Africa: different reactions to past forest fragmentation

Comprehensive sampling reveals circumpolarity and sympatry in seven mitochondrial lineages of the Southern Ocean crinoid species Promachocrinus kerguelensis (Echinodermata).

Starting to unravel the toxoglossan knot: molecular phylogeny of the "turrids" (Neogastropoda: Conoidea)