List of works by Arnaud Couloux

A molecular phylogenetic framework for the Muricidae, a diverse family of carnivorous gastropods

scientific article

A multi-locus phylogeny suggests an ancient hybridization event between Campephilus and melanerpine woodpeckers (Aves: Picidae).

scientific article

A new Indo-Malayan member of the Stenostiridae (Aves: Passeriformes) revealed by multilocus sequence data: biogeographical implications for a morphologically diverse clade of flycatchers

scientific article

A new genomic resource dedicated to wood formation in Eucalyptus

scientific article

A population genomics insight into the Mediterranean origins of wine yeast domestication

scientific article published on 6 August 2015

A remarkable case of micro-endemism in Laonastes aenigmamus (Diatomyidae, Rodentia) revealed by nuclear and mitochondrial DNA sequence data

scientific article published in 2012

A unique combination of inhibitory and partially activating mutations in β3 of a patient with variant-type Glanzmann thrombasthenia

An extreme case of plant-insect codiversification: figs and fig-pollinating wasps

scientific article

AphanoDB: a genomic resource for Aphanomyces pathogens

scientific article

Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome

scientific article

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

scientific article

Cantharellus texensis sp. nov. from Texas, a southern lookalike of C. cinnabarinus revealed by tef-1 sequence data

scientific article

Climate and soil type together explain the distribution of microendemic species in a biodiversity hotspot

scientific article

Comparative genomics of emerging pathogens in the Candida glabrata clade

scientific article

Comparative phylogeography of two African carnivorans presumably introduced into Europe: disentangling natural versus human-mediated dispersal across the Strait of Gibraltar

Comparative phylogeography of two sibling species of forest-dwelling rodent (Praomys rostratus and P. tullbergi) in West Africa: different reactions to past forest fragmentation

scientific article

Complete DNA sequence of Kuraishia capsulata illustrates novel genomic features among budding yeasts (Saccharomycotina)

scientific article

Complete circular DNA in the mitochondria-like organelles of Blastocystis hominis

scientific article published on 23 July 2008

Complete genome sequence of invertebrate iridescent virus 22 isolated from a blackfly larva

scientific article

Complete genome sequence of invertebrate iridovirus IIV-25 isolated from a blackfly larva

scientific article published on May 2014

Complete genome sequence of invertebrate iridovirus IIV22A, a variant of IIV22, isolated originally from a blackfly larva

scientific article

Complete genome sequence of invertebrate iridovirus IIV30 isolated from the corn earworm, Helicoverpa zea.

scientific article published on 3 January 2014

Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3

scientific article

Complete genome sequence of the commensal Streptococcus salivarius strain JIM8777.

scientific article published on 08 July 2011

Complex biogeographic history of the cuckoo-shrikes and allies (Passeriformes: Campephagidae) revealed by mitochondrial and nuclear sequence data

scientific article

Comprehensive sampling reveals circumpolarity and sympatry in seven mitochondrial lineages of the Southern Ocean crinoid species Promachocrinus kerguelensis (Echinodermata).

scientific article

DNA barcoding in a biodiversity hot spot: potential value for the identification of Malagasy Euphorbia L. listed in CITES Appendices I and II.

scientific article

DNA markers to disentangle complexes of cryptic taxa in mealybugs (Hemiptera: Pseudococcidae)

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

scientific article

Deep-sea origin and in-situ diversification of chrysogorgiid octocorals

scientific article (publication date: 2012)

Did glacial advances during the Pleistocene influence differently the demographic histories of benthic and pelagic Antarctic shelf fishes?--Inferences from intraspecific mitochondrial and nuclear DNA sequence diversity

scientific article (publication date: 12 November 2007)

Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean.

scientific article

Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat

scientific article published on 31 October 2011

Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat

scientific article published on 09 September 2008

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

scientific article

Evolution of oil-producing trichomes in Sisyrinchium (Iridaceae): insights from the first comprehensive phylogenetic analysis of the genus

scientific article

Evolution of the mitochondrial genome in mammals living at high altitude: new insights from a study of the tribe Caprini (Bovidae, Antilopinae).

scientific article published on 18 March 2009

Evolutionary Advantage Conferred by an Eukaryote-to-Eukaryote Gene Transfer Event in Wine Yeasts

scientific article published on 6 March 2015

Evolutionary history of the Corallinales (Corallinophycidae, Rhodophyta) inferred from nuclear, plastidial and mitochondrial genomes

scientific article

Exploring the genome of the salt-marsh Spartina maritima (Poaceae, Chloridoideae) through BAC end sequence analysis.

scientific article published on 23 July 2013

Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements

scientific article (publication date: 27 April 2010)

Finding candidate genes under positive selection in Non-model species: examples of genes involved in host specialization in pathogens

scientific article

Gene amplification and functional diversification of melanocortin 4 receptor at an extremely polymorphic locus controlling sexual maturation in the platyfish

scientific article published on 27 September 2013

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

scientific article

GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts

scientific article

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography

scientific article (publication date: 2007)

Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite

scientific article

Genome sequences of Escherichia coli B strains REL606 and BL21(DE3).

scientific article published on 26 September 2009

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea

scientific article

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

scientific article

Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels

scientific article

Global population structure of the stable fly (Stomoxys calcitrans) inferred by mitochondrial and nuclear sequence data

scientific article

Haplowebs as a graphical tool for delimiting species: a revival of Doyle's "field for recombination" approach and its application to the coral genus Pocillopora in Clipperton

scientific article

Hidden diversity and endemism on seamounts: focus on poorly dispersive neogastropods

Hidden species diversity of Australian burrowing snakes (Ramphotyphlops) ⬇️

scientific article (publication date: 4 July 2013)

High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane

article

Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes.

scientific article

Identifying gastropod spawn from DNA barcodes: possible but not yet practicable

scientific article

Implications of a molecular phylogenetic study of the Malagasy genus Cedrelopsis and its relatives (Ptaeroxylaceae).

scientific article published on 30 June 2010

Invasion of the French paleolithic painted cave of Lascaux by members of the Fusarium solani species complex

scientific article

Is the species flock concept operational? The Antarctic shelf case

scientific article

Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas

scientific article (publication date: October 2009)

Maintaining two mating types: structure of the mating type locus and its role in heterokaryosis in Podospora anserina

scientific article

Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact.

scientific article published on 13 September 2010

Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces

scientific article published on 25 June 2010

Mitochondrial DNA Differentiation Between Two Closely Related Species, Phlebotomus ( Paraphlebotomus ) chabaudi and Phlebotomus ( Paraphlebotomus ) riouxi (Diptera: Psychodidae), Based on Direct Sequencing and Polymerase Chain Reaction-Restriction Fr

article

Mitochondrial DNA Intraspecific Variability in Sergentomyia minuta (Diptera: Psychodidae).

scientific article

Molecular analysis of the sex chromosomes of the platyfishXiphophorus maculatus: Towards the identification of a new type of master sexual regulator in vertebrates

scientific article published on 01 September 2009

Molecular analysis of the sex-determining region of the platyfish Xiphophorus maculatus.

scientific article published in January 2006

Molecular and morphological systematics of the sandfly Sergentomyia (Sintonius) clydei Sinton, 1928 and questions about its record in the Seychelles

scientific article

Molecular evidence for an Asian origin of monitor lizards followed by Tertiary dispersals to Africa and Australasia

scientific article

Molecular phylogenetics of Thecata (Hydrozoa, Cnidaria) reveals long-term maintenance of life history traits despite high frequency of recent character changes

scientific article published on 21 August 2009

Molecular phylogeny in mytilids supports the wooden steps to deep-sea vents hypothesis

scientific article

Molecular phylogeny of African bush-shrikes and allies: tracing the biogeographic history of an explosive radiation of corvoid birds

scientific article

Molecular phylogeny of Carduelinae (Aves, Passeriformes, Fringillidae) proves polyphyletic origin of the genera Serinus and Carduelis and suggests redefined generic limits

scientific article

Molecular phylogeny of the Dictyotales and their position within the Phaeophyceae, based on nuclear, plastid and mitochondrial DNA sequence data

scientific article

Molecular phylogeny of the Herpestidae (Mammalia, Carnivora) with a special emphasis on the Asian Herpestes

scholarly article (2009)

Molecular support for a rapid cladogenesis of the woodpecker clade Malarpicini, with further insights into the genus Picus (Piciformes: Picinae).

scientific article

Morphometric and molecular characterization of the series Guyanensis (Diptera, Psychodidae, Psychodopygus) from the Ecuadorian Amazon Basin with description of a new species

scientific article

Multilocus analyses of an Antarctic fish species flock (Teleostei, Notothenioidei, Trematominae): phylogenetic approach and test of the early-radiation event

scientific article published on 21 March 2011

Multiple colonizations from Madagascar and converged acquisition of dioecy in the Mascarene Dombeyoideae (Malvaceae) as inferred from chloroplast and nuclear DNA sequence analyses

scientific article

New insights into the origin of the B genome of hexaploid wheat: evolutionary relationships at the SPA genomic region with the S genome of the diploid relative Aegilops speltoides

scientific article (publication date: 25 November 2008)

Non-invasive prenatal testing for trisomy 21 based on analysis of cell-free fetal DNA circulating in the maternal plasma

scientific article published in May 2015

Out of Australia and back again: the world-wide historical biogeography of non-pollinating fig wasps (Hymenoptera: Sycophaginae)

article

Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes

scientific article (publication date: 2012)

Patterns of genetic structure among Hawaiian corals of the genus Pocillopora yield clusters of individuals that are compatible with morphology

scientific article

Phylogenetic analyses of mitochondrial and nuclear data in haematophagous flies support the paraphyly of the genus Stomoxys (Diptera: Muscidae)

scientific article (publication date: April 2011)

Phylogenetics, species boundaries and timing of resource tracking in a highly specialized group of seed beetles (Coleoptera: Chrysomelidae: Bruchinae).

scientific article published on 21 March 2011

Phylogeny and taxonomy of Syngonanthus and Comanthera (Eriocaulaceae): Evidence from expanded sampling

scientific article (publication date: February 2014)

Phylogeny of Laniarius: Molecular data reveal L. liberatus synonymous with L. erlangeri and “plumage coloration” as unreliable morphological characters for defining species and species groups

scientific article (publication date: August 2008)

Phylogeny, evolutionary trends and classification of the Spathelia-Ptaeroxylon clade: morphological and molecular insights

scientific article

Phylogeography and evolutionary history of the Crocidura olivieri complex (Mammalia, Soricomorpha): from a forest origin to broad ecological expansion across Africa

scientific article

Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones

scientific article

Positive selection of protective variants for type 2 diabetes from the Neolithic onward: a case study in Central Asia

scientific article

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

scientific article

RNF213, a new nuclear marker for acanthomorph phylogeny

scientific article

Recurrent DNA virus domestication leading to different parasite virulence strategies.

scientific article

Replication of nonautonomous retroelements in soybean appears to be both recent and common

scientific article

Reviving the African wolf Canis lupus lupaster in North and West Africa: a mitochondrial lineage ranging more than 6,000 km wide

scientific article published in 2012

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

scientific article (publication date: July 2014)

Starting to unravel the toxoglossan knot: molecular phylogeny of the "turrids" (Neogastropoda: Conoidea)

scientific article

Structural and functional partitioning of bread wheat chromosome 3B.

scientific article

Studying sources of incongruence in arthropod molecular phylogenies: sea spiders (Pycnogonida) as a case study

scientific article

THE CONTRIBUTION OF SUB-SAHARAN AFRICAN STRAINS TO THE PHYLOGENY OF CYANOBACTERIA: FOCUSING ON THE NOSTOCACEAE (NOSTOCALES, CYANOBACTERIA)1

scholarly article by Solène Thomazeau et al published 19 March 2010 in Journal of Phycology

The Medicago genome provides insight into the evolution of rhizobial symbioses

scientific article

The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications

scientific article

The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution

scholarly article

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

scientific article

The complete phylogeny of Pseudobulweria, the most endangered seabird genus: systematics, species status and conservation implications

article

The complex phylogeography of the Indo-Malayan Alophoixus bulbuls with the description of a putative new ring species complex

scientific article

The evolution of north-east Atlantic gadfly petrels using statistical phylogeography

scientific article published on 21 November 2012

The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii

scientific article

The genome sequence of the model ascomycete fungus Podospora anserina

scientific article

The phylogenetic position of the 'living fossils' Neoglyphea and Laurentaeglyphea (Decapoda: Glypheidea).

scientific article

The phylogeny and classification of caenophidian snakes inferred from seven nuclear protein-coding genes

scientific article

The phylogeography of Eurasian Fraxinus species reveals ancient transcontinental reticulation

scientific article

The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants

scientific article

Tracking the elusive monophyly of nototheniid fishes (Teleostei) with multiple mitochondrial and nuclear markers

scientific article

Transcript profiling of poplar leaves upon infection with compatible and incompatible strains of the foliar rust Melampsora larici-populina

scientific article

Transcriptome of Aphanomyces euteiches: new oomycete putative pathogenicity factors and metabolic pathways

scientific article

Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges.

scientific article published on 25 September 2017

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