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List of works by Andrew Rambaut

A Bayesian phylogenetic method to estimate unknown sequence ages

scientific article

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

scientific article published on 15 July 2020

A dynamic nomenclature proposal for SARS-CoV-2 to assist genomic epidemiology

scientific article published on 20 April 2020

A synchronized global sweep of the internal genes of modern avian influenza virus.

scientific article

APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016

scientific article published on 02 November 2023

APOBEC3G-induced hypermutation of human immunodeficiency virus type-1 is typically a discrete "all or nothing" phenomenon

scientific article

Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2

scientific article published on 09 October 2020

Accommodating individual travel history, global mobility, and unsampled diversity in phylogeography: a SARS-CoV-2 case study

scientific article published on 23 June 2020

Accommodating the effect of ancient DNA damage on inferences of demographic histories

scientific article

Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors

scientific article published in January 2018

Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST.

scientific article

An observational, laboratory-based study of outbreaks of middle East respiratory syndrome coronavirus in Jeddah and Riyadh, kingdom of Saudi Arabia, 2014.

scientific article

Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.

scientific article

Analysis of the medium (M) segment sequence of Guaroa virus and its comparison to other orthobunyaviruses

scientific article published in October 2004

Ancient hybridization and an Irish origin for the modern polar bear matriline

scientific article

Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England

scientific article published on 25 March 2021

Assessment of automated genotyping protocols as tools for surveillance of HIV-1 genetic diversity

scientific article published in July 2006

Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool

Author Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland ⬇️

correction of a scholarly article

Author Correction: Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands

scientific article published on 20 October 2020

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics

scientific article published on 01 November 2019

BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics

scientific article

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

scientific article published on 08 April 2019

BEAST 2: a software platform for Bayesian evolutionary analysis

scientific article (publication date: April 2014)

BEAST: Bayesian evolutionary analysis by sampling trees

scientific article

Bayesian coalescent inference of past population dynamics from molecular sequences

scientific article

Bayesian estimation of sequence damage in ancient DNA.

scientific article published on 29 March 2007

Bayesian inference of evolutionary histories under time-dependent substitution rates

scientific article published on 01 August 2019

Bayesian nonparametric clustering in phylogenetics: modeling antigenic evolution in influenza

scientific article published on 18 January 2017

Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10.

scientific article published in January 2018

Bayesian phylogenetics with BEAUti and the BEAST 1.7

scientific article

Bayesian phylogeography finds its roots

scientific article

Breeding racehorses: what price good genes?

scientific article published on April 2008

CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance

publication published on 01 July 2021

COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study

scientific article published on 02 July 2020

COVID-19 in healthcare workers in three hospitals in the South of the Netherlands, March 2020

scientific article published on 01 May 2020

Canalization of the evolutionary trajectory of the human influenza virus

scientific article

Characterisation of in-hospital complications associated with COVID-19 using the ISARIC WHO Clinical Characterisation Protocol UK: a prospective, multicentre cohort study

scientific article published in 2021

Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences

article

Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity

scientific article

Clinical features and virological analysis of a case of Middle East respiratory syndrome coronavirus infection

scientific article

Co-infections, secondary infections, and antimicrobial use in patients hospitalised with COVID-19 during the first pandemic wave from the ISARIC WHO CCP-UK study: a multicentre, prospective cohort study

scientific article published in 2021

Comment on "Mutation rate and genotype variation of Ebola virus from Mali case sequences".

scientific article

Comparative population dynamics of HIV-1 subtypes B and C: subtype-specific differences in patterns of epidemic growth.

scientific article

Complete mitochondrial genome sequences of two extinct moas clarify ratite evolution

scientific article (publication date: 8 February 2001)

Conserved footprints of APOBEC3G on Hypermutated human immunodeficiency virus type 1 and human endogenous retrovirus HERV-K(HML2) sequences

scientific article published on 18 June 2008

Correction: MERS-CoV spillover at the camel-human interface.

scientific article

Correction: Phylodynamics and Human-Mediated Dispersal of a Zoonotic Virus.

scientific article

Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty

scientific article published on 21 August 2007

Determinants of dengue virus dispersal in the Americas

scientific article published on 01 July 2020

Development and validation of the ISARIC 4C Deterioration model for adults hospitalised with COVID-19: a prospective cohort study

scientific article published in 2021

Early Insights from Statistical and Mathematical Modeling of Key Epidemiologic Parameters of COVID-19

scientific article published on 11 September 2020

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

scientific article

Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013-2016 Epidemic

scientific article published on November 2016

Emerging Concepts of Data Integration in Pathogen Phylodynamics ⬇️

scientific article

Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission

scientific article

Epidemic History and Iatrogenic Transmission of Blood-borne Viruses in Mid-20th Century Kinshasa.

scientific article

Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set. ⬇️

scientific article published on 30 December 2015

Epidemic establishment and cryptic transmission of Zika virus in Brazil and the Americas

scientific article

Epidemic waves of COVID-19 in Scotland: a genomic perspective on the impact of the introduction and relaxation of lockdown on SARS-CoV-2

scientific article

Epidemiology: Sexual transmission of HIV in Africa

scientific article published on April 2003

Episodic sexual transmission of HIV revealed by molecular phylodynamics

scientific article

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK

scientific article published on 08 January 2021

Estimating divergence dates and substitution rates in the Drosophila phylogeny

scientific article (publication date: November 2012)

Estimating the rate of intersubtype recombination in early HIV-1 group M strains

scientific article published on 12 December 2012

Estimating the relative contribution of dNTP pool imbalance and APOBEC3G/3F editing to HIV evolution in vivo

scientific article published in October 2007

Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity

scientific article published on 19 November 2020

Evaluating the effects of SARS-CoV-2 Spike mutation D614G on transmissibility and pathogenicity

scientific article

Evolution and Spread of Ebola Virus in Liberia, 2014-2015

scientific article

Evolution and epidemic spread of SARS-CoV-2 in Brazil

scientific article published on 23 July 2020

Evolution and epidemic spread of SARS-CoV-2 in Brazil

preprint article published on 12 June 2020

Evolutionary analysis of the dynamics of viral infectious disease

scientific article published on August 2009

Evolutionary dynamics of local pandemic H1N1/2009 influenza virus lineages revealed by whole-genome analysis ⬇️

scientific article

Evolutionary genetics and the emergence of SARS Coronavirus

article

Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation

scientific article

Evolutionary genomics of host adaptation in vesicular stomatitis virus

scientific article

Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic

scientific article published on 01 April 2020

Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic

scientific article published on 28 July 2020

Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen).

scientific article

Flight of the dodo

scientific article (publication date: March 2002)

Fogarty International Center collaborative networks in infectious disease modeling: lessons learnt in research and capacity building

scholarly article published by Edward C. Holmes in 2018

Full-genome deep sequencing and phylogenetic analysis of novel human betacoronavirus

scientific article published on May 2013

Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic

scientific article published on 17 August 2021

Genesis and pathogenesis of the 1918 pandemic H1N1 influenza A virus.

scientific article

Genome sequencing reveals Zika virus diversity and spread in the Americas

scientific article (publication date: 18 February 2017)

Genome-wide evolutionary dynamics of influenza B viruses on a global scale

scientific article published on 28 December 2017

Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China

scientific article published on 28 April 2020

Genomic analysis of hepatitis B virus reveals antigen state and genotype as sources of evolutionary rate variation

scientific article

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

scientific article published on 20 July 2023

Genomic epidemiology of SARS-CoV-2 in Guangdong Province, China

scientific article published on 04 April 2020

Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland

scholarly article

Genomic epidemiology reveals multiple introductions of Zika virus into the United States ⬇️

scientific article

Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity

scientific article published on 29 September 2021

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

scientific article

Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil

scientific article

Global circulation patterns of seasonal influenza viruses vary with antigenic drift

scientific article published on 8 June 2015

Gradients do grow on trees: a linear-time 𝒪 (N)-dimensional gradient for statistical phylogenetics

scientific article published on 27 May 2020

HIV Sequence Compendium 2018

article

HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations

scientific article

HIV evolutionary dynamics within and among hosts

scientific article

HIV phylogenetics

scientific article published on September 2007

Heterotachy and tree building: a case study with plastids and eubacteria.

scientific article

High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE

scientific article published on 01 January 2019

Identification of a common deletion in the spike protein of SARS-CoV-2

scientific article published on 02 April 2020

Identification of common deletions in the spike protein of SARS-CoV-2

scientific article published on 22 June 2020

Implementation of corticosteroids in treatment of COVID-19 in the ISARIC WHO Clinical Characterisation Protocol UK: prospective, cohort study

scientific article published in 2022

Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci

scientific article (publication date: March 2013)

Improving pandemic influenza risk assessment

scientific article

Inference of viral evolutionary rates from molecular sequences

scientific article published on January 2003

Inferring confidence sets of possibly misspecified gene trees

scientific article published in January 2002

Inferring heterogeneous evolutionary processes through time: from sequence substitution to phylogeography

scientific article

Inferring the rate and time-scale of dengue virus evolution

scientific article published on January 2003

Integrating influenza antigenic dynamics with molecular evolution

scientific article

JC virus evolution and its association with human populations

scientific article

Lessons from Ebola: Improving infectious disease surveillance to inform outbreak management

scientific article published on September 2015

Livestock origin for a human pandemic clone of community-associated methicillin-resistant Staphylococcus aureus

scientific article

Longitudinal population analysis of dual infection with recombination in two strains of HIV type 1 subtype B in an individual from a Phase 3 HIV vaccine efficacy trial

scientific article

Lorenzo-Redondo et al. reply

scientific article published in November 2017

MERS coronaviruses from camels in Africa exhibit region-dependent genetic diversity.

scientific article published on 5 March 2018

MERS-CoV recombination: implications about the reservoir and potential for adaptation

scientific article published on 20 January 2016

MERS-CoV recombination: implications about the reservoir and potential for adaptation

scientific article published on 13 June 2015

MERS-CoV spillover at the camel-human interface

scientific article published on 16 January 2018

MERS-CoV spillover at the camel-human interface

scientific article published on 11 August 2017

Many-core algorithms for statistical phylogenetics

scientific article

Measurably evolving populations

scientific article published in 2003

Metagenomic Next-Generation Sequencing of the 2014 Ebola Virus Disease Outbreak in the Democratic Republic of the Congo

scientific article published on 26 August 2019

Middle East respiratory syndrome coronavirus: quantification of the extent of the epidemic, surveillance biases, and transmissibility

scientific article (publication date: 2014)

Modelling the impact of co-circulating low pathogenic avian influenza viruses on epidemics of highly pathogenic avian influenza in poultry

scientific article

Molecular dating of human-to-bovid host jumps by Staphylococcus aureus reveals an association with the spread of domestication ⬇️

scientific article published on May 23, 2012

Molecular epidemiology: HIV-1 and HCV sequences from Libyan outbreak

scientific article published on December 2006

Molecular footprint of drug-selective pressure in a human immunodeficiency virus transmission chain

scientific article published on September 2005

Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom

scientific article

Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus ⬇️

scientific article

Multiple introductions of Zika virus into the United States revealed through genomic epidemiology

scientific article

Multiple introductions of salmonid alphavirus from a wild reservoir have caused independent and self-sustainable epizootics in aquaculture

scientific article published on 23 September 2013

No proof that typhoid caused the Plague of Athens (a reply to Papagrigorakis et al.).

scientific article published on 26 May 2006

Non-steroidal anti-inflammatory drug use and outcomes of COVID-19 in the ISARIC Clinical Characterisation Protocol UK cohort: a matched, prospective cohort study

scientific article published in 2021

Online Bayesian phylodynamic inference in BEAST with application to epidemic reconstruction

scientific article published on 26 February 2020

Origin and evolution of the unique hepatitis C virus circulating recombinant form 2k/1b

scientific article published on 23 November 2011

Origin and fate of A/H1N1 influenza in Scotland during 2009

scientific article

Origin of AIDS: contaminated polio vaccine theory refuted.

scientific article

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

scientific article (publication date: 25 June 2009)

Origins of the 2009 H1N1 influenza pandemic in swine in Mexico

scientific article

OutbreakTools: a new platform for disease outbreak analysis using the R software

scientific article (publication date: June 2014)

PANGEA-HIV 2: Phylogenetics And Networks for Generalised Epidemics in Africa

article

Pacing a small cage: mutation and RNA viruses

article

Pandemic potential of a strain of influenza A (H1N1): early findings

scientific article

Pandemics: spend on surveillance, not prediction

scientific article published in Nature

Persistent HIV-1 replication maintains the tissue reservoir during therapy

scientific article published on 27 January 2016

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak.

scientific article

Phylodynamic reconstruction reveals norovirus GII.4 epidemic expansions and their molecular determinants

scientific article

Phylodynamics and human-mediated dispersal of a zoonotic virus

scientific article (publication date: 28 October 2010)

Phylogenetic Analysis of Guinea 2014 EBOV Ebolavirus Outbreak

scientific article published in 2014

Phylogenetic Evidence for Deleterious Mutation Load in RNA Viruses and Its Contribution to Viral Evolution

article

Phylogenetic analysis of a human isolate from the 2000 Israel West Nile virus epidemic

scientific article

Phylogenetic analysis reveals a correlation between the expansion of very virulent infectious bursal disease virus and reassortment of its genome segment B.

scientific article published in September 2006

Phylogenetic reconstruction of a known HIV-1 CRF04_cpx transmission network using maximum likelihood and Bayesian methods

scientific article published in November 2004

Phylogenetic surveillance of viral genetic diversity and the evolving molecular epidemiology of human immunodeficiency virus type 1.

scientific article

Phylogeography and population dynamics of dengue viruses in the Americas

scientific article

Phylogeography takes a relaxed random walk in continuous space and time

scientific article

Population Genetics of HIV: Parameter Estimation Using Genealogy-based Methods

article

Possible footprints of APOBEC3F and/or other APOBEC3 deaminases, but not APOBEC3G, on HIV-1 from patients with acute/early and chronic infections

scientific article published on 27 August 2014

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

scholarly article by Andrew Rambaut et al published 1 September 2018 in Systematic Biology

Preferential detection of HIV subtype C' over subtype A in cervical cells from a dually infected woman

scientific article published on 01 June 2005

Preliminary genomic characterisation of an emergent SARS-CoV-2 lineage in the UK defined by a novel set of spike mutations. ⬇️

Scientific report published 18 December 2020

Publisher Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland ⬇️

correction of a scholarly article

Questioning the evidence for genetic recombination in the 1918 "Spanish flu" virus

scientific article published in April 2002

Rapid SARS-CoV-2 whole genome sequencing for informed public health decision making in the Netherlands

scientific article published on 26 April 2020

Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands

scientific article published on 16 July 2020

Rapid and sensitive direct detection and identification of poliovirus from stool and environmental surveillance samples using nanopore sequencing

scientific article published on 01 July 2020

Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa

scientific article

Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa

scientific article published on 07 January 2022

Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases ⬇️

scientific article

Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis

scientific article

Real-time digital pathogen surveillance - the time is now.

scientific article

Real-time, portable genome sequencing for Ebola surveillance

scientific article

Reassortment between influenza B lineages and the emergence of a coadapted PB1-PB2-HA gene complex

scientific article

Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus

scientific article

Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form

scientific article

Reconstructing geographical movements and host species transitions of foot-and-mouth disease virus serotype SAT 2.

scientific article published on 22 October 2013

Reconstructing the initial global spread of a human influenza pandemic: A Bayesian spatial-temporal model for the global spread of H1N1pdm

scientific article

Reduced evolutionary rate in reemerged Ebola virus transmission chains

journal article published in 2016

Relationship between haemagglutination inhibition titre and immunity to influenza in ferrets

scientific article

Relaxed Phylogenetics and the Palaeoptera Problem: Resolving Deep Ancestral Splits in the Insect Phylogeny ⬇️

scientific article published on December 5, 2012

Relaxed phylogenetics and dating with confidence

scientific article

Reply to Pape et al.: the phylogeography of HIV-1 group M subtype B.

scholarly article

Resurgence of Ebola Virus Disease in Guinea Linked to a Survivor With Virus Persistence in Seminal Fluid for More Than 500 Days

scientific article

Revealing the Micro-scale Signature of Endemic Zoonotic Disease Transmission in an African Urban Setting

scientific article

Rise and fall of the Beringian steppe bison

scientific article (publication date: 26 November 2004)

Risk of adverse outcomes in patients with underlying respiratory conditions admitted to hospital with COVID-19: a national, multicentre prospective cohort study using the ISARIC WHO Clinical Characterisation Protocol UK

scientific article published in 2021

SANTA-SIM: Simulating Viral Sequence Evolution Dynamics Under Selection and Recombination

SANTA-SIM: simulating viral sequence evolution dynamics under selection and recombination

scientific article published on 01 January 2019

SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse

scientific article published in 2021

SARS-CoV-2 variants, spike mutations and immune escape

scientific article published in 2021

SARS-CoV-2-specific nasal IgA wanes 9 months after hospitalisation with COVID-19 and is not induced by subsequent vaccination

scientific article published in 2023

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

scientific article

Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022

scientific article published on 24 June 2022

Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: applications to viral and host phenotypic evolution

scientific article

Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints

scientific article

Spatial dynamics of human-origin H1 influenza A virus in North American swine

scientific article

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes.

scientific article

Spread, circulation, and evolution of the Middle East respiratory syndrome coronavirus

scientific article published on 18 February 2014

Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics

scientific article

Temporal and spatial analysis of the 2014-2015 Ebola virus outbreak in West Africa

scientific article published on 17 June 2015

Temporal signal and the phylodynamic threshold of SARS-CoV-2

scientific article published on 05 May 2020

Temporal signal and the phylodynamic threshold of SARS-CoV-2

scientific article published on 01 July 2020

Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans

scientific article

Testing the Cambrian explosion hypothesis by using a molecular dating technique

scientific article (publication date: 13 October 1998)

Testing the relationship between morphological and molecular rates of change along phylogenies

scientific article published in October 2002

The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic

scientific article published on 26 August 2022

The Origins of SARS-CoV-2: A Critical Review

scholarly article

The RNA virus database

scientific article published on 23 October 2008

The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases

scientific article

The causes and consequences of HIV evolution

scientific article

The early molecular epidemiology of the swine-origin A/H1N1 human influenza pandemic.

scientific article

The effect of genetic structure on molecular dating and tests for temporal signal

scientific article

The effects of sampling strategy on the quality of reconstruction of viral population dynamics using Bayesian skyline family coalescent methods: A simulation study

scientific article published on January 2016

The emergence of HIV/AIDS in the Americas and beyond

scientific article

The emergence of SARS-CoV-2 in Europe and North America

scientific article

The emergence of SARS-CoV-2 in Europe and the US

scientific article published on 23 May 2020

The evolution of Ebola virus: Insights from the 2013–2016 epidemic

scientific article (publication date: 12 October 2016)

The evolution of genome compression and genomic novelty in RNA viruses

scientific article

The evolutionary analysis of emerging low frequency HIV-1 CXCR4 using variants through time--an ultra-deep approach

scientific article

The evolutionary dynamics of endogenous retroviruses

scientific article

The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates

scientific article (publication date: April 2014)

The genesis and source of the H7N9 influenza viruses causing human infections in China

scientific article

The genomic and epidemiological dynamics of human influenza A virus

scientific article

The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2

scientific article published on 26 August 2022

The molecular population genetics of HIV-1 group O

scientific article

The proximal origin of SARS-CoV-2 ⬇️

scientific article published on 17 March 2020

Toward a quantitative understanding of viral phylogeography

scientific article published on 28 October 2011

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2

scientific article

Tracking virus outbreaks in the twenty-first century

scientific article published on 13 December 2018

Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive genomic study

scientific article published on 20 September 2013

Transmission of SARS-CoV-2 Lineage B.1.1.7 in England: Insights from linking epidemiological and genetic data

scientific article

Unifying the spatial epidemiology and molecular evolution of emerging epidemics

scientific article

Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2.

scientific article

Unusual Ebola Virus Chain of Transmission, Conakry, Guinea, 2014-2015

scientific article

Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses

scientific article

Viral evolution and the emergence of SARS coronavirus

scientific article

Virus genomes reveal factors that spread and sustained the Ebola epidemic

scientific article (publication date: 12 April 2017)

Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic

article published in 2016

Widespread intra-serotype recombination in natural populations of dengue virus

scientific article

Zika virus evolution and spread in the Americas

scientific article

πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios

scientific article

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