List of works by Krishna Palaniappan

A genomic catalog of Earth's microbiomes

scientific article published on 09 November 2020

Absence of Genome Reduction In Diverse, Facultative Endohyphal Bacteria

Absence of genome reduction in diverse, facultative endohyphal bacteria

scientific article

An experimental metagenome data management and analysis system

scientific article

Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.

scientific article published on 29 September 2016

Complete Genome Sequence for sp. Strain OR53 and Draft Genome Sequence for sp. Strain OR43, Two Bacteria Tolerant to Uranium

Complete Genome Sequence of Nitrosomonas cryotolerans ATCC 49181, a Phylogenetically Distinct Ammonia-Oxidizing Bacterium Isolated from Arctic Waters

scientific article published on 16 March 2017

Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source

Complete Genome Sequence of Thermoanaerobacterium sp. Strain RBIITD, a Butyrate- and Butanol-Producing Thermophile

scientific article

Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and "Thermoanaerobacter cellulolyticus"

scientific article published on 14 May 2015

Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil

scientific article

Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1).

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Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288)

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Complete genome sequence of Acidaminococcus fermentans type strain (VR4).

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Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP).

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Complete genome sequence of Actinosynnema mirum type strain (101).

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Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA)

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Complete genome sequence of Aminobacterium colombiense type strain (ALA-1).

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Complete genome sequence of Anaerococcus prevotii type strain (PC1).

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Complete genome sequence of Arcanobacterium haemolyticum type strain (11018)

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Complete genome sequence of Archaeoglobus profundus type strain (AV18)

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Complete genome sequence of Arcobacter nitrofigilis type strain (CI)

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Complete genome sequence of Arthrobacter phenanthrenivorans type strain (Sphe3)

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Complete genome sequence of Atopobium parvulum type strain (IPP 1246)

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Complete genome sequence of Bacteroides helcogenes type strain (P 36-108).

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Complete genome sequence of Bacteroides salanitronis type strain (BL78).

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Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122).

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Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10).

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Complete genome sequence of Brachyspira murdochii type strain (56-150)

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Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1)

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Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845).

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Complete genome sequence of Catenulispora acidiphila type strain (ID 139908).

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Complete genome sequence of Cellulomonas flavigena type strain (134).

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Complete genome sequence of Cellulophaga algicola type strain (IC166)

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Complete genome sequence of Cellulophaga lytica type strain (LIM-21).

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Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034).

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Complete genome sequence of Conexibacter woesei type strain (ID131577).

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Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24).

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Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug).

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Complete genome sequence of Cryptobacterium curtum type strain (12-3)

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Complete genome sequence of Deinococcus maricopensis type strain (LB-34).

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Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460)

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Complete genome sequence of Desulfarculus baarsii type strain (2st14).

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Complete genome sequence of Desulfobulbus propionicus type strain (1pr3)

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Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)).

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Complete genome sequence of Desulfomicrobium baculatum type strain (X)

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Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575)

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Complete genome sequence of Desulfurococcus mucosus type strain (O7/1).

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Complete genome sequence of Dyadobacter fermentans type strain (NS114)

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Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255).

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Complete genome sequence of Ferrimonas balearica type strain (PAT).

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Complete genome sequence of Geodermatophilus obscurus type strain (G-20)

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Complete genome sequence of Gordonia bronchialis type strain (3410).

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Complete genome sequence of Haliangium ochraceum type strain (SMP-2)

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Complete genome sequence of Haliscomenobacter hydrossis type strain (O)

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Complete genome sequence of Halogeometricum borinquense type strain (PR3)

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Complete genome sequence of Halomicrobium mukohataei type strain (arg-2)

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Complete genome sequence of Halorhabdus utahensis type strain (AX-2)

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Complete genome sequence of Haloterrigena turkmenica type strain (4k)

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Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6)

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Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1)

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Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1).

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Complete genome sequence of Intrasporangium calvum type strain (7 KIP).

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Complete genome sequence of Isosphaera pallida type strain (IS1B).

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Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134)

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Complete genome sequence of Kangiella koreensis type strain (SW-125).

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Complete genome sequence of Kribbella flavida type strain (IFO 14399).

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Complete genome sequence of Kytococcus sedentarius type strain (541).

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Complete genome sequence of Leadbetterella byssophila type strain (4M15).

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Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b).

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Complete genome sequence of Mahella australiensis type strain (50-1 BON).

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Complete genome sequence of Marivirga tractuosa type strain (H-43)

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Complete genome sequence of Meiothermus ruber type strain (21)

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Complete genome sequence of Meiothermus silvanus type strain (VI-R2)

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Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847)

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Complete genome sequence of Methanothermus fervidus type strain (V24S)

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Complete genome sequence of Nakamurella multipartita type strain (Y-104).

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Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1).

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Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509).

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Complete genome sequence of Oceanithermus profundus type strain (506)

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Complete genome sequence of Odoribacter splanchnicus type strain (1651/6).

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Complete genome sequence of Olsenella uli type strain (VPI D76D-27C)

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Complete genome sequence of Paludibacter propionicigenes type strain (WB4).

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Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3).

scientific article

Complete genome sequence of Pirellula staleyi type strain (ATCC 27377)

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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and eme

scientific article

Complete genome sequence of Planctomyces limnophilus type strain (Mü 290).

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Complete genome sequence of Rhodothermus marinus type strain (R-10).

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Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845).

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Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845T)

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Complete genome sequence of Saccharomonospora viridis type strain (P101).

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Complete genome sequence of Sanguibacter keddieii type strain (ST-74)

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Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300).

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Complete genome sequence of Segniliparus rotundus type strain (CDC 1076)

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Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1)

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Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022)

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Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228).

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Complete genome sequence of Spirosoma linguale type strain (1)

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Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21).

scientific article

Complete genome sequence of Streptobacillus moniliformis type strain (9901)

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Complete genome sequence of Streptosporangium roseum type strain (NI 9100).

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Complete genome sequence of Sulfurimonas autotrophica type strain (OK10).

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Complete genome sequence of Sulfurospirillum deleyianum type strain (5175).

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Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR).

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Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyRT)

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Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1)

scientific article

Complete genome sequence of Thermaerobacter marianensis type strain (7p75a)

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Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883).

scientific article

Complete genome sequence of Thermobispora bispora type strain (R51).

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Complete genome sequence of Thermocrinis albus type strain (HI 11/12)

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Complete genome sequence of Thermomonospora curvata type strain (B9).

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Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P)

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Complete genome sequence of Thermosphaera aggregans type strain (M11TL)

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Complete genome sequence of Treponema succinifaciens type strain (6091).

scientific article

Complete genome sequence of Truepera radiovictrix type strain (RQ-24)

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Complete genome sequence of Tsukamurella paurometabola type strain (no. 33).

scientific article

Complete genome sequence of Veillonella parvula type strain (Te3)

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Complete genome sequence of Vulcanisaeta distributa type strain (IC-017)

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Complete genome sequence of Weeksella virosa type strain (9751).

scientific article

Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07)

scientific article

Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2).

scientific article

Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney

scientific article

Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)).

scientific article

Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)).

scientific article published on 15 April 2013

Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL)

scientific article

Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)).

scientific article

Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262).

scientific article

Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113)

scientific article published on 23 September 2011

Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift

scientific article published on 20 May 2013

Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A)

scientific article

Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)).

scientific article published on 15 April 2013

Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).

scientific article published on 20 July 2012

Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)).

scientific article

Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T))

scientific article

Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Spha

scientific article

Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812(T))

scientific article

Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent

scientific article

Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2))

scientific article

Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and

scientific article

Corrigendum: Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato.

scientific article

Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina

scientific article

Draft Genome Sequence of Heavy Metal-Resistant Cupriavidus alkaliphilus ASC-732T, Isolated from Agave Rhizosphere in the Northeast of Mexico

scientific article

Draft Genome Sequence of Methylocapsa palsarum NE2T, an Obligate Methanotroph from Subarctic Soil

scientific article

Draft Genome Sequence of Pseudomonas azotifigens Strain DSM 17556T (6H33bT), a Nitrogen Fixer Strain Isolated from a Compost Pile

scientific article published on 31 October 2013

Draft Genome Sequence of Yokenella regensburgei Strain WCD67, Isolated from the Boxelder Bug

scientific article published on 09 April 2020

Draft Genome Sequence of the Cellulolytic and Xylanolytic Thermophile Clostridium clariflavum Strain 4-2a

scientific article published on 23 July 2015

Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium

scientific article

Draft genome sequence of Actinotignum schaalii DSM 15541T: Genetic insights into the lifestyle, cell fitness and virulence

scientific article

Draft genome sequences of 10 strains of the genus exiguobacterium

scientific article

Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246).

scientific article published on 15 June 2010

Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377)

scientific article

Erratum to: Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia

scientific article published on 11 October 2016

Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

scientific article published on 21 March 2016

Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato

scientific article

Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton

scientific article

Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert

scientific article

Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl

scientific article published on 02 October 2013

Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)).

scientific article published on October 2012

Genome sequence of the Medicago-nodulating Ensifer meliloti commercial inoculant strain RRI128.

scientific article

Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring

scientific article

Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T))

scientific article

Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T))

scientific article published on 4 December 2012

Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva

scientific article published on 25 May 2013

Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)).

scientific article

Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10)

scientific article

Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio

scientific article published on 02 October 2013

Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T)).

scientific article

Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia

scientific article

Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T)).

scientific article published on October 2012

Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)).

scientific article published on 25 May 2013

Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.

scientific article published on 15 April 2013

Genomes of ubiquitous marine and hypersaline Hydrogenovibrio , Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments

article published in 2018

High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1(T) (DSM 17521(T)) isolated from muddy waters of a drainage system in Chandigarh, India

scientific article published on 9 February 2015

High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk

scientific article

High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism

scientific article

High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada

scientific article published on 20 October 2016

High-Quality Draft Genome Sequences of Eight Bacteria Isolated from Fungus Gardens Grown by Trachymyrmex septentrionalis Ants

scientific article published on 19 July 2018

High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China

scientific article published on 28 April 2016

High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway

scientific article published on 27 February 2016

High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.

scientific article published on 28 July 2017

High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).

scientific article published on 20 February 2017

High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)).

scientific article published on 15 April 2013

IMG 4 version of the integrated microbial genomes comparative analysis system

scientific article

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

scientific article published on 14 July 2015

IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes

scientific article

IMG/M 4 version of the integrated metagenome comparative analysis system

scientific article published on 16 October 2013

IMG/M-HMP: a metagenome comparative analysis system for the Human Microbiome Project

scientific article

IMG/M: a data management and analysis system for metagenomes

scientific article

IMG/M: integrated genome and metagenome comparative data analysis system

scientific article

IMG/M: the integrated metagenome data management and comparative analysis system

scientific article

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses

scientific article published on 30 October 2016

IMG: the Integrated Microbial Genomes database and comparative analysis system

scientific article

Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials

scientific article published on 16 October 2019

Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom

scientific article published on 22 July 2019

Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot

scientific article published on 31 July 2019

Molecular Dialogues between Early Divergent Fungi and Bacteria in an Antagonism versus a Mutualism

scientific article published on 08 September 2020

Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm

scientific article

Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21).

scientific article

Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3).

scientific article

Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139).

scientific article

Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20).

scientific article published on 23 September 2011

One Complete and Seven Draft Genome Sequences of Subdivision 1 and 3 Acidobacteria Isolated from Soil

scientific article published on 30 January 2020

Permanent draft genome of Thermithiobaclillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia

scientific article published on 26 September 2016

Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria

scientific article published on 19 January 2017

Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207)

scientific article

Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1).

scientific article

Publisher Correction: A genomic catalog of Earth's microbiomes

scientific article published on 18 November 2020

Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system

scientific article

The Integrated Microbial Genomes (IMG) System: An Expanding Comparative Analysis Resource

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole

scientific article published in 2021

The complete genome sequence of Clostridium indolis DSM 755(T.).

scientific article

The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments

scientific article

The integrated microbial genomes (IMG) system

scientific article

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions

scientific article

The integrated microbial genomes system: an expanding comparative analysis resource

scientific article

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

scientific article published on 24 February 2016

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

scientific article

Using IMG: Comparative Analysis with the Integrated MicrobialGenomes System