List of works by Markus Göker

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scientific article published on 12 June 2017

100-year-old enigma solved: identification, genomic characterization and biogeography of the yet uncultured Planctomyces bekefii

scientific article published on 11 November 2019

16S-rRNA-based analysis of bacterial diversity in the gut of fungus-cultivating termites (Microtermes and Odontotermes species).

scientific article

A Clustering Optimization Strategy for Molecular Taxonomy Applied to Planktonic Foraminifera SSU rDNA

scientific article (publication date: 9 September 2010)

A clustering optimization strategy to estimate species richness of Sebacinales in the tropical Andes based on molecular sequences from distinct DNA regions

article

A publicly accessible database for Clostridioides difficile genome sequences supports tracing of transmission chains and epidemics

scientific article published on 29 July 2020

A revision of Bremia graminicola

scientific article

A revision of Plasmopara penniseti, with implications for the host range of the downy mildews with pyriform haustoria

scientific article published on 29 September 2007

A taxonomic framework for emerging groups of ecologically important marine gammaproteobacteria based on the reconstruction of evolutionary relationships using genome-scale data

scientific article

Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes

scientific article published on 23 September 2019

Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria

scientific article published on 07 April 2020

Ancestral regulatory mechanisms specify conserved midbrain circuitry in arthropods and vertebrates

scientific article published on 03 August 2020

Anther smuts of Caryophyllaceae: Molecular characters indicate host-dependent species delimitation

article

AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa

scientific article

Belliella kenyensis sp. nov., isolated from an alkaline lake

scientific article

Biofilm plasmids with a rhamnose operon are widely distributed determinants of the 'swim-or-stick' lifestyle in roseobacters

scientific article published on 8 March 2016

COPYCAT : cophylogenetic analysis tool

article

Charcoal filter paper improves the viability of cryopreserved filamentous ectomycorrhizal and saprotrophic Basidiomycota and Ascomycota

article

Choosing one name for pleomorphic fungi: The example of Aspergillus versus Eurotium, Neosartorya and Emericella

scientific article (publication date: 24 June 2016)

Chryseobacterium hispalense sp. nov., a plant-growth-promoting bacterium isolated from a rainwater pond in an olive plant nursery, and emended descriptions of Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense and Ch

scientific article

Chryseobacterium oleae sp. nov., an efficient plant growth promoting bacterium in the rooting induction of olive tree (Olea europaea L.) cuttings and emended descriptions of the genus Chryseobacterium, C. daecheongense, C. gambrini, C. gleum, C. joo

scientific article

Cobaviruses – a new globally distributed phage group infecting Rhodobacteraceae in marine ecosystems

scientific article published on 04 February 2019

Codivergence of mycoviruses with their hosts

scientific article published in 2011

Comparative genomics of biotechnologically important yeasts

scientific article

Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050(T) (DSM 19838(T)) and Gramella portivictoriae UST040801-001(T) (DSM 23547(T)), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 eme

scientific article published on 03 June 2016

Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1).

scientific article

Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288)

scientific article

Complete genome sequence of Acidaminococcus fermentans type strain (VR4).

scientific article

Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP).

scientific article

Complete genome sequence of Actinosynnema mirum type strain (101).

scientific article

Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA)

scientific article

Complete genome sequence of Aminobacterium colombiense type strain (ALA-1).

scientific article

Complete genome sequence of Anaerococcus prevotii type strain (PC1).

scientific article

Complete genome sequence of Arcanobacterium haemolyticum type strain (11018)

scientific article

Complete genome sequence of Archaeoglobus profundus type strain (AV18)

scientific article

Complete genome sequence of Arcobacter nitrofigilis type strain (CI)

scientific article

Complete genome sequence of Atopobium parvulum type strain (IPP 1246)

scientific article

Complete genome sequence of Bacteroides helcogenes type strain (P 36-108).

scientific article

Complete genome sequence of Bacteroides salanitronis type strain (BL78).

scientific article

Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122).

scientific article

Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10).

scientific article

Complete genome sequence of Brachyspira murdochii type strain (56-150)

scientific article

Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1)

scientific article

Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845).

scientific article

Complete genome sequence of Catenulispora acidiphila type strain (ID 139908).

scientific article

Complete genome sequence of Cellulomonas flavigena type strain (134).

scientific article

Complete genome sequence of Cellulophaga algicola type strain (IC166)

scientific article

Complete genome sequence of Cellulophaga lytica type strain (LIM-21).

scientific article

Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034).

scientific article

Complete genome sequence of Conexibacter woesei type strain (ID131577).

scientific article

Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24).

scientific article

Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug).

scientific article

Complete genome sequence of Cryptobacterium curtum type strain (12-3)

scientific article

Complete genome sequence of DSM 30083(T), the type strain (U5/41(T)) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy

scientific article published in 2014

Complete genome sequence of Deinococcus maricopensis type strain (LB-34). ⬇️

scientific article

Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460)

scientific article

Complete genome sequence of Desulfarculus baarsii type strain (2st14).

scientific article

Complete genome sequence of Desulfobulbus propionicus type strain (1pr3)

scientific article

Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)).

scientific article

Complete genome sequence of Desulfomicrobium baculatum type strain (X)

scientific article

Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575)

scientific article

Complete genome sequence of Desulfurococcus mucosus type strain (O7/1). ⬇️

scientific article

Complete genome sequence of Dyadobacter fermentans type strain (NS114)

scientific article

Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255).

scientific article

Complete genome sequence of Ferrimonas balearica type strain (PAT).

scientific article

Complete genome sequence of Geodermatophilus obscurus type strain (G-20)

scientific article

Complete genome sequence of Gordonia bronchialis type strain (3410).

scientific article

Complete genome sequence of Haliangium ochraceum type strain (SMP-2)

scientific article

Complete genome sequence of Haliscomenobacter hydrossis type strain (O)

scientific article

Complete genome sequence of Halogeometricum borinquense type strain (PR3)

scientific article

Complete genome sequence of Halomicrobium mukohataei type strain (arg-2)

scientific article

Complete genome sequence of Halorhabdus utahensis type strain (AX-2)

scientific article

Complete genome sequence of Haloterrigena turkmenica type strain (4k)

scientific article

Complete genome sequence of Hirschia baltica type strain (IFAM 1418(T))

scientific article

Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6)

scientific article

Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1)

scientific article

Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1). ⬇️

scientific article

Complete genome sequence of Intrasporangium calvum type strain (7 KIP).

scientific article

Complete genome sequence of Isosphaera pallida type strain (IS1B).

scientific article

Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds

scientific article published on 03 February 2017

Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134)

scientific article

Complete genome sequence of Kangiella koreensis type strain (SW-125).

scientific article

Complete genome sequence of Kribbella flavida type strain (IFO 14399).

scientific article

Complete genome sequence of Kytococcus sedentarius type strain (541).

scientific article

Complete genome sequence of Leadbetterella byssophila type strain (4M15).

scientific article

Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b).

scientific article

Complete genome sequence of Mahella australiensis type strain (50-1 BON).

scientific article

Complete genome sequence of Marivirga tractuosa type strain (H-43) ⬇️

scientific article

Complete genome sequence of Meiothermus ruber type strain (21)

scientific article

Complete genome sequence of Meiothermus silvanus type strain (VI-R2)

scientific article

Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847)

scientific article

Complete genome sequence of Methanothermus fervidus type strain (V24S)

scientific article

Complete genome sequence of Nakamurella multipartita type strain (Y-104).

scientific article

Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1).

scientific article

Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509).

scientific article

Complete genome sequence of Oceanithermus profundus type strain (506) ⬇️

scientific article

Complete genome sequence of Odoribacter splanchnicus type strain (1651/6). ⬇️

scientific article

Complete genome sequence of Olsenella uli type strain (VPI D76D-27C)

scientific article

Complete genome sequence of Paludibacter propionicigenes type strain (WB4).

scientific article

Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3).

scientific article

Complete genome sequence of Pirellula staleyi type strain (ATCC 27377)

scientific article

Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and eme

scientific article

Complete genome sequence of Planctomyces limnophilus type strain (Mü 290).

scientific article

Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1(T)).

scientific article

Complete genome sequence of Rhodospirillum rubrum type strain (S1).

scientific article

Complete genome sequence of Rhodothermus marinus type strain (R-10).

scientific article

Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845).

scientific article

Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845T)

article

Complete genome sequence of Saccharomonospora viridis type strain (P101).

scientific article

Complete genome sequence of Sanguibacter keddieii type strain (ST-74)

scientific article

Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300).

scientific article

Complete genome sequence of Segniliparus rotundus type strain (CDC 1076)

scientific article

Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1)

scientific article

Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022)

scientific article

Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228).

scientific article

Complete genome sequence of Spirosoma linguale type strain (1)

scientific article

Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21).

scientific article

Complete genome sequence of Streptobacillus moniliformis type strain (9901)

scientific article

Complete genome sequence of Streptosporangium roseum type strain (NI 9100).

scientific article

Complete genome sequence of Sulfurimonas autotrophica type strain (OK10).

scientific article

Complete genome sequence of Sulfurospirillum deleyianum type strain (5175).

scientific article

Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR).

scientific article

Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyRT)

article

Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1)

scientific article

Complete genome sequence of Thermaerobacter marianensis type strain (7p75a)

scientific article

Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883).

scientific article

Complete genome sequence of Thermobispora bispora type strain (R51).

scientific article

Complete genome sequence of Thermocrinis albus type strain (HI 11/12)

scientific article

Complete genome sequence of Thermomonospora curvata type strain (B9).

scientific article

Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P)

scientific article

Complete genome sequence of Thermosphaera aggregans type strain (M11TL)

scientific article

Complete genome sequence of Tolumonas auensis type strain (TA 4)

scientific article published on 23 September 2011

Complete genome sequence of Treponema succinifaciens type strain (6091).

scientific article

Complete genome sequence of Truepera radiovictrix type strain (RQ-24)

scientific article

Complete genome sequence of Tsukamurella paurometabola type strain (no. 33).

scientific article

Complete genome sequence of Veillonella parvula type strain (Te3)

scientific article

Complete genome sequence of Vulcanisaeta distributa type strain (IC-017)

scientific article

Complete genome sequence of Weeksella virosa type strain (9751).

scientific article

Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07)

scientific article

Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210(T) (= DSM 26640(T) = BS107(T)).

scientific article

Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2).

scientific article

Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney

scientific article

Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)).

scientific article

Complete genome sequence of the bacteriochlorophyll a-containing Roseibacterium elongatum type strain (DSM 19469(T)), a representative of the Roseobacter group isolated from Australian coast sand

scientific article

Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)).

scientific article published on 15 April 2013

Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL)

scientific article

Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)).

scientific article

Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)).

scientific article

Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T)

Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)).

scientific article

Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262).

scientific article

Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113)

scientific article published on 23 September 2011

Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477(T)).

scientific article published on 03 June 2016

Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11(T)).

scientific article

Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift

scientific article published on 20 May 2013

Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A)

scientific article

Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336(T)), a representative of the Roseobacter clade

scientific article published on 04 October 2013

Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)).

scientific article published on 15 April 2013

Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).

scientific article published on 20 July 2012

Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)).

scientific article

Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DL(T))

scientific article published on 11 December 2012

Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T))

scientific article

Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Spha

scientific article

Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812(T))

scientific article

Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent

scientific article

Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2))

scientific article

Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and

scientific article

Controlling false discoveries in high-dimensional situations: boosting with stability selection.

scientific article

Correction: Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex

scientific article published on 11 April 2016

Corrigendum: Genome-Based Taxonomic Classification of Bacteroidetes.

scientific article published on 21 February 2018

Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.

scientific article published on 2 October 2017

Cutaneotropic Human β-/γ-Papillomaviruses Are Rarely Shared between Family Members

scientific article published on 11 June 2009

Description of Geodermatophilus amargosae sp. nov., to accommodate the not validly named Geodermatophilus obscurus subsp. amargosae (Luedemann, 1968).

scientific article

Description of Trichococcus ilyis sp. nov. by combined physiological and in silico genome hybridization analyses

scientific article

Description of gamma radiation-resistant Geodermatophilus dictyosporus sp. nov. to accommodate the not validly named Geodermatophilus obscurus subsp. dictyosporus (Luedemann, 1968).

scientific article

Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

scientific article published on 28 January 2010

Diversity of Termitomyces associated with fungus-farming termites assessed by cultural and culture-independent methods

scientific article

Draft Genome Sequence of Frankia Strain G2, a Nitrogen-Fixing Actinobacterium Isolated from Casuarina equisetifolia and Able To Nodulate Actinorhizal Plants of the Order Rhamnales

scientific article published on 26 May 2016

Draft Genome Sequences of Six Type Strains of the Genus Massilia

scientific article published on 30 April 2020

Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica

scientific article

Dual function of tropodithietic acid as antibiotic and signaling molecule in global gene regulation of the probiotic bacterium Phaeobacter inhibens

scientific article published on 7 April 2017

En route to a genome-based classification of Archaea and Bacteria?

scientific article

Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246).

scientific article published on 15 June 2010

Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377)

scientific article

Erratum to: Description of Geodermatophilus amargosae sp. nov., to Accommodate the Not Validly Named Geodermatophilus obscurus subsp. amargosae (Luedemann, 1968)

scholarly article published in Current Microbiology

Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scholarly article published in Nature Biotechnology

Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes

scientific article published in 2022

Extrachromosomal, extraordinary and essential--the plasmids of the Roseobacter clade

scientific article published on 24 February 2013

Filling the gaps: missing taxon names at the ranks of class, order and family ⬇️

scientific article published on 14 December 2022

Fine-structured multi-scaling long-range correlations in completely sequenced genomes--features, origin, and classification

scientific article published on 17 June 2009

Genea mexicana, sp. nov., and Geopora tolucana, sp. nov., new hypogeous Pyronemataceae from Mexico, and the taxonomy of Geopora reevaluated ⬇️

article

General functions to transform associate data to host data, and their use in phylogenetic inference from sequences with intra-individual variability

scientific article (publication date: 18 March 2008)

Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences

scientific article

Genome Sequence of Gammaproteobacterial Pseudohaliea rubra Type Strain DSM 19751, Isolated from Coastal Seawater of the Mediterranean Sea.

scientific article published on 20 November 2014

Genome analysis of the marine bacterium Kiloniella laminariae and first insights into comparative genomics with related Kiloniella species

scientific article published on 16 December 2019

Genome of the R-body producing marine alphaproteobacterium Labrenzia alexandrii type strain (DFL-11(T))

scientific article published on 25 February 2013

Genome of the marine alphaproteobacterium Hoeflea phototrophica type strain (DFL-43(T)).

scientific article published on 25 February 2013

Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment

scientific article

Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl

scientific article published on 02 October 2013

Genome sequence of Phaeobacter caeruleus type strain (DSM 24564(T)), a surface-associated member of the marine Roseobacter clade

scientific article published on 30 July 2013

Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis

scientific article published on 03 October 2013

Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens

scientific article

Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment

scientific article

Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)).

scientific article published on October 2012

Genome sequence of the Leisingera aquimarina type strain (DSM 24565(T)), a member of the marine Roseobacter clade rich in extrachromosomal elements

scientific article published on 30 July 2013

Genome sequence of the Litoreibacter arenae type strain (DSM 19593(T)), a member of the Roseobacter clade isolated from sea sand

scientific article published on October 2013

Genome sequence of the Roseovarius mucosus type strain (DSM 17069(T)), a bacteriochlorophyll a-containing representative of the marine Roseobacter group isolated from the dinoflagellate Alexandrium ostenfeldii

scientific article published on 19 March 2015

Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring

scientific article

Genome sequence of the Wenxinia marina type strain (DSM 24838(T)), a representative of the Roseobacter group isolated from oilfield sediments

scientific article

Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134(T)).

scientific article published on 30 September 2013

Genome sequence of the exopolysaccharide-producing Salipiger mucosus type strain (DSM 16094(T)), a moderately halophilic member of the Roseobacter clade

scientific article published on 15 March 2014

Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T))

scientific article

Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T))

scientific article published on 4 December 2012

Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva

scientific article published on 25 May 2013

Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)).

scientific article

Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10)

scientific article

Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio

scientific article published on 02 October 2013

Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T)).

scientific article

Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia

scientific article

Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T))

scientific article

Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T)).

scientific article published on October 2012

Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566(T.).

scientific article published on 30 July 2013

Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)).

scientific article published on 25 May 2013

Genome sequence of the pink to light reddish-pigmented Rubellimicrobium mesophilum type strain (DSM 19309(T)), a representative of the Roseobacter group isolated from soil, and emended description of the species

scientific article

Genome sequence of the pink-pigmented marine bacterium Loktanella hongkongensis type strain (UST950701-009P(T)), a representative of the Roseobacter group

scientific article

Genome sequence of the reddish-pigmented Rubellimicrobium thermophilum type strain (DSM 16684(T)), a member of the Roseobacter clade

scientific article published on 30 July 2013

Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128(T)).

scientific article

Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.

scientific article published on 15 April 2013

Genome sequence-based species delimitation with confidence intervals and improved distance functions

scientific article

Genome-Based Taxonomic Classification of Bacteroidetes

scientific article (publication date: 2016)

Genome-Based Taxonomic Classification of the Phylum

article published in 2018

Genome-Based Taxonomic Classification of the Phylum Actinobacteria ⬇️

journal article from 'Frontiers in Microbiology' published in 2018

Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae

scientific article published on 19 December 2017

Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential

scientific article published on 11 January 2018

Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species

scientific article published on 08 January 2020

Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov.

scientific article

Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota

scientific article published on 20 February 2017

Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex

scientific article

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

scientific article published in August 2014

Genomic insights into the taxonomic status of the Bacillus cereus group

scientific article

Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein

scientific article published on 4 March 2013

Genomik: Grundlage zum Verständnis des Erfolgs von Roseobacter-Gruppe

Geodermatophilus africanus sp. nov., a halotolerant actinomycete isolated from Saharan desert sand

scientific article

Geodermatophilus arenarius sp. nov., a xerophilic actinomycete isolated from Saharan desert sand in Chad

scientific article

Geodermatophilus normandii sp. nov., isolated from Saharan desert sand

scientific article

Geodermatophilus poikilotrophi sp. nov.: a multitolerant actinomycete isolated from dolomitic marble

scientific article

Geodermatophilus saharensis sp. nov., isolated from sand of the Saharan desert in Chad.

scientific article

Geodermatophilus siccatus sp. nov., isolated from arid sand of the Saharan desert in Chad

scientific article

Geodermatophilus telluris sp. nov., an actinomycete isolated from Saharan desert sand

scientific article

Geodermatophilus tzadiensis sp. nov., a UV radiation-resistant bacterium isolated from sand of the Saharan desert

scientific article

Guidelines for interpreting the International Code of Nomenclature of Prokaryotes and for preparing a Request for an Opinion

scientific article published in 2023

Haloplasma

scientific article published in 2019

Hidden diversity in the non‐caryophyllaceous plant‐parasitic members ofMicrobotryum(Pucciniomycotina: Microbotryales)

article

High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea

scientific article published on 06 January 2017

High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1(T) (DSM 17521(T)) isolated from muddy waters of a drainage system in Chandigarh, India

scientific article published on 9 February 2015

High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2(T) (DSM 21788(T)), a valuable source of polysaccharide decomposing enzymes

scientific article

High quality draft genome sequences of Pseudomonas fulva DSM 17717(T), Pseudomonas parafulva DSM 17004(T) and Pseudomonas cremoricolorata DSM 17059(T) type strains

scientific article

High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk

scientific article

High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods

scientific article

High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T)

scientific article published on 16 June 2016

High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture

scientific article

High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1T, a gammaproteobacterium isolated from estuarine sediment

scientific article published on 08 September 2016

High-quality draft genome sequences of Pseudomonas monteilii DSM 14164T, Pseudomonas mosselii DSM 17497T, Pseudomonas plecoglossicida DSM 15088T, Pseudomonas taiwanensis DSM 21245T and Pseudomonas vranovensis DSM 16006T: taxonomic considerations

scientific article published on 29 October 2019

High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)).

scientific article published on 15 April 2013

Highly parallelized inference of large genome-based phylogenies

scholarly article by Jan P Meier-Kolthoff et al published 7 August 2013 in Concurrency and Computation: Practice and Experience

Hoffmannoscypha, a novel genus of brightly coloured, cupulate Pyronemataceae closely related to Tricharina and Geopora

article by Benjamin Stielow et al published 13 December 2012 in Mycological Progress

Horizontal operon transfer, plasmids, and the evolution of photosynthesis in Rhodobacteraceae

scholarly article by Henner Brinkmann et al published August 2018 in The ISME Journal

How do obligate parasites evolve? A multi-gene phylogenetic analysis of downy mildews

scientific article

ICSP response to ‘Regulating access can restrict participation in reporting new species and taxa’

scientific article published in 2022

Impacts of pr-10a overexpression at the molecular and the phenotypic level

scientific article

Implications of molecular characters for the phylogeny of the Microbotryaceae (Basidiomycota: Urediniomycetes)

scientific article

Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets

scientific article (publication date: 29 December 2016)

Intraspecific Relationship of Plasmopara halstedii Isolates Differing in Pathogenicity and Geographic Origin Based on ITS Sequence Data

article

Judicial Opinion 128

scientific article published in 2023

Judicial Opinions 112–122 ⬇️

scientific article published on 10 August 2022

Kribbella shirazensis sp. nov., isolated from Iranian soil

scientific article

Large-Scale Co-Phylogenetic Analysis on the Grid

scholarly article published January 2009

Large-Scale Co-Phylogenetic Analysis on the Grid

scholarly article

List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ

scientific article published on 23 July 2020

Maximum Likelihood Analyses of 3,490 rbcL Sequences: Scalability of Comprehensive Inference versus Group-Specific Taxon Sampling

scientific article

Metabolic traits of an uncultured archaeal lineage--MSBL1--from brine pools of the Red Sea.

scientific article published on 13 January 2016

Molecular Phylogenetic Reconstruction

scholarly article published 2011

Molecular and phenotypic analyses reveal the non-identity of the Phaeobacter gallaeciensis type strain deposits CIP 105210T and DSM 17395.

scientific article

Molecular taxonomy of phytopathogenic fungi: a case study in Peronospora

scientific article

Morphology and phylogeny of Hyaloperonospora erophilae and H. praecox sp. nov., two downy mildew species co-occurring on Draba verna sensu lato

article

Nocardiopsis arvandica sp. nov., isolated from sandy soil

scientific article

Nocardiopsis mwathae sp. nov., isolated from the haloalkaline Lake Elmenteita in the African Rift Valley

scientific article

Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21).

scientific article

Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3).

scientific article

Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139). ⬇️

scientific article

Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20).

scientific article published on 23 September 2011

Notification of changes in taxonomic opinion previously published outside the IJSEM. List of Changes in Taxonomic Opinion no. 39

scholarly article

Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 73, part 10 of the IJSEM

scholarly article

Novel genera and species of coniothyrium-like fungi in Montagnulaceae (Ascomycota). ⬇️

scientific article

Novel insights into the diversity of catabolic metabolism from ten haloarchaeal genomes

scientific article

Ocean's Twelve: flagellar and biofilm chromids in the multipartite genome of Marinovum algicola DG898 exemplify functional compartmentalization

scientific article

Pathways and substrate-specific regulation of amino acid degradation in Phaeobacter inhibens DSM 17395 (archetype of the marine Roseobacter clade).

scientific article published on 27 October 2013

Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207)

scientific article

Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1).

scientific article

Phylogenetic classification of yeasts and related taxa within Pucciniomycotina

scientific article

Phylogenetic relationships of Plasmopara, Bremia and other genera of downy mildew pathogens with pyriform haustoria based on Bayesian analysis of partial LSU rDNA sequence data

scientific article

Phylogenetic relationships of graminicolous downy mildews based on cox2 sequence data.

scientific article

Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats

scientific article published on 20 January 2017

Phylogeny of Hyaloperonospora based on nuclear ribosomal internal transcribed spacer sequences

scientific article (publication date: May 2004)

Phylogeny of Peronospora, parasitic on Fabaceae, based on ITS sequences

scholarly article by Gema García-Blázquez et al published May 2008 in Mycological Research

Phylogeny-driven target selection for large-scale genome-sequencing (and other) projects

scientific article published on 20 May 2013

Proposal of a type strain for Frankia alni (Woronin 1866) Von Tubeuf 1895, emended description of Frankia alni, and recognition of Frankia casuarinae sp. nov. and Frankia elaeagni sp. nov.

scientific article

Proposals to emend Rules 8, 15, 22, 25a, 30(3)(b), 30(4), 34a, and Appendix 7 of the International Code of Nomenclature of Prokaryotes ⬇️

scientific article published on 15 December 2022

Quantifying the phylodynamic forces driving papillomavirus evolution

scientific article

Relicts Within the Genus Complex Astragalus/Oxytropis (Fabaceae), and the Comparison of Diversity by Objective Means

Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies

scientific article published on 26 November 2019

Species delimitation in downy mildews: the case of Hyaloperonospora in the light of nuclear ribosomal ITS and LSU sequences

scientific article

Species delimitation in taxonomically difficult fungi: the case of Hymenogaster

scientific article

Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs

scientific article published on 28 January 2010

Status of the SeqCode in the International Journal of Systematic and Evolutionary Microbiology ⬇️

scientific article published on 16 December 2022

Streptomyces alkaliphilus sp. nov., isolated from sediments of Lake Elmenteita in the Kenyan Rift Valley

scientific article

TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes

scientific article published on 01 January 2022

TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy

Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age.

scientific article

The Composite 259-kb Plasmid of Martelella mediterranea DSM 17316T-A Natural Replicon with Functional RepABC Modules from Rhodobacteraceae and Rhizobiaceae

scientific article published on 21 September 2017

The Evolution of Ecological Diversity in Acidobacteria

scientific article published on 02 February 2022

The Families Erysipelotrichaceae emend., Coprobacillaceae fam. nov., and Turicibacteraceae fam. nov

scientific article published in 2014

The Family Intrasporangiaceae

The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments

scientific article

The neglected hypogeous fungus Hydnotrya bailii Soehner (1959) is a widespread sister taxon of Hydnotrya tulasnei (Berk.) Berk. & Broome (1846)

scientific article published in 2009

Toward a Novel Multilocus Phylogenetic Taxonomy for the Dermatophytes

scientific article (publication date: February 2017)

Towards an integrated phylogenetic classification of the Tremellomycetes

scientific article (publication date: June 2015)

Using the Multiple Analysis Approach to Reconstruct Phylogenetic Relationships among Planktonic Foraminifera from Highly Divergent and Length-polymorphic SSU rDNA Sequences

scientific article (publication date: 11 November 2009)

VICTOR: genome-based phylogeny and classification of prokaryotic viruses

scientific article published on 7 July 2017

Valid publication of names of two domains and seven kingdoms of prokaryotes

scientific article published on 22 January 2024

Validation List no. 213. Valid publication of new names and new combinations effectively published outside the IJSEM

scientific article published on 3 October 2023

Validation List no. 214. Valid publication of new names and new combinations effectively published outside the IJSEM

scientific article published in December 2023

Validation List no. 215. Valid publication of new names and new combinations effectively published outside the IJSEM

scholarly article

Validation List no. 216. Valid publication of new names and new combinations effectively published outside the IJSEM

scientific article published on 28 March 2024

Validation List no. 218. Valid publication of new names and new combinations effectively published outside the IJSEM

scientific article published on 31 July 2024

Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kinetics

scientific article published in 2012

When should a DDH experiment be mandatory in microbial taxonomy?

scientific article published on 17 April 2013

opm: an R package for analysing OmniLog(R) phenotype microarray data

scientific article

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