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List of works by Gaël Varoquaux

A Comparative Study of Algorithms for Intra- and Inter-subjects fMRI Decoding

scientific article published in 2012

A Comparison of Metrics and Algorithms for Fiber Clustering

A Framework for Inter-Subject Prediction of Functional Connectivity From Structural Networks.

scientific article published on 6 August 2013

A Probabilistic Framework to Infer Brain Functional Connectivity from Anatomical Connections

A group model for stable multi-subject ICA on fMRI datasets

scientific article

A novel sparse graphical approach for multimodal brain connectivity inference

scientific article published on 01 January 2012

A novel sparse group Gaussian graphical model for functional connectivity estimation

scientific article published in January 2013

A probabilistic framework to infer brain functional connectivity from anatomical connections

scientific article published in January 2011

A supervised clustering approach for fMRI-based inference of brain states

scientific article published in June 2012

API design for machine learning software: experiences from the scikit-learn project ⬇️

scientific article (publication date: September 2013)

Accurate Definition of Brain Regions Position through the Functional Landmark Approach

scientific article published on 01 January 2010

Agile Computer Control of a Complex Experiment

Analytics on Non-Normalized Data Sources: More Learning, Rather Than More Cleaning

scientific article published in January 2022

Assessing and tuning brain decoders: Cross-validation, caveats, and guidelines ⬇️

scientific article

Atlases of cognition with large-scale human brain mapping

BIDS Apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.

scientific article

Benchmarking functional connectome-based predictive models for resting-state fMRI

scientific article published on 02 March 2019

Benchmarking solvers for TV-ℓ 1 least-squares and logistic regression in brain imaging

scientific article published in June 2014

Beyond Brain Reading: Randomized Sparsity and Clustering to Simultaneously Predict and Identify

scientific article published in 2012

Big data and extreme-scale computing

Brain covariance selection: better individual functional connectivity models using population prior ⬇️

Brain-based ranking of cognitive domains to predict schizophrenia

scientific article published on 16 July 2019

Changing computational research. The challenges ahead

scientific article (publication date: 2012)

Cohort-level brain mapping: learning cognitive atoms to single out specialized regions

scientific article

Combining magnetoencephalography with magnetic resonance imaging enhances learning of surrogate-biomarkers

scientific article published on 19 May 2020

Comparing distributions: ℓ1 geometry improves kernel two-sample testing ⬇️

Connectivity-Informed fMRI Activation Detection

scientific article published on 01 January 2011

Connectivity-based parcellation: Critique and implications

scientific article

Connectivity-informed Sparse Classifiers for fMRI Brain Decoding

Convex relaxations of penalties for sparse correlated variables with bounded total variation

Cross-validation failure: Small sample sizes lead to large error bars

scientific article

Decoding Visual Percepts Induced by Word Reading with fMRI

scientific article published in July 2012

Decoding fMRI activity in the time domain improves classification performance

scientific article published on 08 August 2017

Deriving a Multi-subject Functional-Connectivity Atlas to Inform Connectome Estimation

scientific article published on 01 January 2014

Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example ⬇️

scientific article

Detecting Outlying Subjects in High-Dimensional Neuroimaging Datasets with Regularized Minimum Covariance Determinant

scientific article published on 01 January 2011

Detecting outliers in high-dimensional neuroimaging datasets with robust covariance estimators

scientific article published on 24 May 2012

Detection of Brain Functional-Connectivity Difference in Post-stroke Patients Using Group-Level Covariance Modeling

scientific article published on 01 January 2010

Different shades of default mode disturbance in schizophrenia: Subnodal covariance estimation in structure and function.

scientific article published on 3 November 2017

Distinct alterations in Parkinson's medication-state and disease-state connectivity

scientific article published on 6 September 2017

Enhancing the Reproducibility of Group Analysis with Randomized Brain Parcellations

scientific article published on 01 January 2013

Establishment of Best Practices for Evidence for Prediction: A Review

scientific article published on 27 November 2019

Exploring the anatomical encoding of voice with a mathematical model of the vocal system.

scientific article published on 16 July 2016

Extracting brain regions from rest fMRI with total-variation constrained dictionary learning

article by Alexandre Abraham et al published 2013 in Lecture Notes in Computer Science

FReM - Scalable and stable decoding with fast regularized ensemble of models

scientific article published on 10 October 2017

Fine-grain atlases of functional modes for fMRI analysis

scientific article published on 13 July 2020

Formal Models of the Network Co-occurrence Underlying Mental Operations

scientific article

Group-PCA for very large fMRI datasets

scientific article published on 3 August 2014

Hemodynamic Estimation Based on Consensus Clustering

Hierarchical Region-Network Sparsity for High-Dimensional Inference in Brain Imaging.

scientific article

How machine learning is shaping cognitive neuroimaging

scientific article

How to estimate the differential acceleration in a two-species atom interferometer to test the equivalence principle

article

Hyperfrontality and hypoconnectivity during refreshing in schizophrenia

scientific article

I.C.E.: a transportable atomic inertial sensor for test in microgravity

ICA-based sparse features recovery from fMRI datasets

Identification of Mood-Relevant Brain Connections Using a Continuous, Subject-Driven Rumination Paradigm

scientific article

Identifying Predictive Regions from fMRI with TV-L1 Prior

scientific article published in June 2013

Implications of Inconsistencies between fMRI and dMRI on Multimodal Connectivity Estimation

scientific article published on 01 January 2013

Improved Brain Pattern Recovery through Ranking Approaches

scientific article published in July 2012

Improving Accuracy and Power with Transfer Learning Using a Meta-analytic Database ⬇️

scientific article published on 01 January 2012

In Situ Synchrotron Microtomography Reveals Multiple Reaction Pathways During Soda-Lime Glass Synthesis

Individual Brain Charting dataset extension, second release of high-resolution fMRI data for cognitive mapping

scientific article published on 16 October 2020

Individual Brain Charting, a high-resolution fMRI dataset for cognitive mapping.

scientific article

Insights from an autism imaging biomarker challenge: Promises and threats to biomarker discovery

scientific article published in July 2022

Inter-subject Registration of Functional Images: Do We Need Anatomical Images?

scientific article published on 14 February 2018

International Electronic Health Record-Derived COVID-19 Clinical Course Profiles: The 4CE Consortium

scientific article published on 18 April 2020

International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium

scientific article published on 19 August 2020

Joint prediction of multiple scores captures better individual traits from brain images

scientific article

Learning Neural Representations of Human Cognition across Many fMRI Studies ⬇️

scientific article published in January 2017

Learning and comparing functional connectomes across subjects

scientific article

Learning brain regions via large-scale online structured sparse dictionary learning ⬇️

scientific article published in January 2016

Learning to Rank from Medical Imaging Data

scholarly article by Fabian Pedregosa et al published 2012 in Lecture Notes in Computer Science

Light-pulse atom interferometry in microgravity

article by G. Stern et al published 16 May 2009 in European Physical Journal D

Light-shift tomography in an optical-dipole trap for neutral atoms

article

Loading and plotting of cortical surface representations in Nilearn

Machine learning for neuroimaging with scikit-learn

scientific article

Machine learning patterns for neuroimaging-genetic studies in the cloud

scientific article

Manifold-regression to predict from MEG/EEG brain signals without source modeling ⬇️

Mapping paradigm ontologies to and from the brain ⬇️

Markov models for fMRI correlation structure: Is brain functional connectivity small world, or decomposable into networks?

scientific article published on 3 February 2012

Mayavi: 3D Visualization of Scientific Data

article by Prabhu Ramachandran & Gaël Varoquaux published March 2011 in Computing in Science and Engineering

Message from Program Chairs

Multi-subject Dictionary Learning to Segment an Atlas of Brain Spontaneous Activity

scientific article published in 2011

Multi-subject dictionary learning to segment an atlas of brain spontaneous activity

scientific article published in January 2011

Multifractal analysis of Resting State Networks in functional MRI

NeuMiss networks: differentiable programming for supervised learning with missing values. ⬇️

scientific article published in November 2020

NeuroQuery, comprehensive meta-analysis of human brain mapping

scientific article published on 04 March 2020

NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain

scientific article

NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain

scientific article

Neuroimaging Research: From Null-Hypothesis Falsification to Out-of-Sample Generalization

Non-parametric Density Modeling and Outlier-Detection in Medical Imaging Datasets

scholarly article by Virgile Fritsch et al published 2012 in Lecture Notes in Computer Science

On Spatial Selectivity and Prediction across Conditions with fMRI

article published in 2012

Patterns of autism symptoms: hidden structure in the ADOS and ADI-R instruments

scientific article published on 30 July 2020

Patterns of schizophrenia symptoms: hidden structure in the PANSS questionnaire

article published in 2018

Population shrinkage of covariance (PoSCE) for better individual brain functional-connectivity estimation

scientific article published on 15 March 2019

Predicting brain-age from multimodal imaging data captures cognitive impairment

scientific article

Predicting future cognitive decline from non-brain and multimodal brain imaging data in healthy and pathological aging

scientific article published in October 2022

Prediction, Not Association, Paves the Road to Precision Medicine

scientific article published on 12 August 2020

Predictive models avoid excessive reductionism in cognitive neuroimaging

scientific article published on 02 December 2018

Predictive regression modeling with MEG/EEG: from source power to signals and cognitive states

scientific article published on 18 May 2020

Principal Component Regression Predicts Functional Responses across Individuals

article

Publishing scientific software matters

scholarly article by Christophe Pradal et al published September 2013 in Journal of Computational Science

PyXNAT: XNAT in Python

scientific article (publication date: 2012)

Randomized parcellation based inference

scientific article published on 19 November 2013

Recursive Nearest Agglomeration (ReNA): Fast Clustering for Approximation of Structured Signals

scientific article published on 13 March 2018

Relating Brain Functional Connectivity to Anatomical Connections: Model Selection

Robust Group-Level Inference in Neuroimaging Genetic Studies

Robust regression for large-scale neuroimaging studies

scientific article published on 28 February 2015

Scale-Free and Multifractal Time Dynamics of fMRI Signals during Rest and Task

scientific article

Scikit-learn: Machine Learning in Python ⬇️

scientific article

Seeing it all: Convolutional network layers map the function of the human visual system

scientific article

Semi-Supervised Factored Logistic Regression for High-Dimensional Neuroimaging Data ⬇️

Shared endo-phenotypes of default mode dsfunction in attention deficit/hyperactivity disorder and autism spectrum disorder

Similarity encoding for learning with dirty categorical variables

scientific article published on 12 June 2018

Spatial vs. Temporal Features in ICA of Resting-State fMRI - A Quantitative and Qualitative Investigation in the Context of Response Inhibition

scientific article

Statistical Learning for Resting-State fMRI: Successes and Challenges

Subject-specific segregation of functional territories based on deep phenotyping

scientific article published on 24 December 2020

Subspecialization within default mode nodes characterized in 10,000 UK Biobank participants

article published in the Proceedings of the National Academy of Sciences of the United States of America

Tapered-amplified antireflection-coated laser diodes for potassium and rubidium atomic-physics experiments

Testing for Differences in Gaussian Graphical Models: Applications to Brain Connectivity ⬇️

scientific article published in January 2016

The Brain Imaging Data Structure: a standard for organizing and describing outputs of neuroimaging experiments

article

The NumPy Array: A Structure for Efficient Numerical Computation

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments

scientific article, 2016

Total Variation Regularization Enhances Regression-Based Brain Activity Prediction

scientific article published in August 2010

Total variation regularization for fMRI-based prediction of behavior

scientific article

Transmodal Learning of Functional Networks for Alzheimer's Disease Prediction

scientific article published on 15 August 2016

Transport on Riemannian Manifold for Connectivity-Based Brain Decoding

scientific article published on 3 August 2015

Transport on Riemannian Manifold for Functional Connectivity-Based Classification

Using and understanding cross-validation strategies. Perspectives on Saeb et al

scientific article published on 17 March 2017

Which fMRI clustering gives good brain parcellations?

scientific article (publication date: 2014)

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