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List of works by Jeffrey Shabanowitz

A PGC-1alpha-O-GlcNAc transferase complex regulates FoxO transcription factor activity in response to glucose

scientific article

A distinct H2A.X isoform is enriched in Xenopus laevis eggs and early embryos and is phosphorylated in the absence of a checkpoint

scientific article

A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis

scientific article

A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry

scientific article

A novel histone deacetylase pathway regulates mitosis by modulating Aurora B kinase activity

scientific article

A novel model to identify interaction partners of the PTEN tumor suppressor gene in human bladder cancer

scientific article

A phosphorylated subpopulation of the histone variant macroH2A1 is excluded from the inactive X chromosome and enriched during mitosis

scientific article

A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNAs in neurons

scientific article (publication date: 15 October 2002)

Acetylation of vertebrate H2A.Z and its effect on the structure of the nucleosome

scientific article

Activation of a nuclear Cdc2-related kinase within a mitogen-activated protein kinase-like TDY motif by autophosphorylation and cyclin-dependent protein kinase-activating kinase

scientific article

Acyclovir Has Low but Detectable Influence on HLA-B*57:01 Specificity without Inducing Hypersensitivity

scientific article

An experimentally derived database of candidate Ras-interacting proteins.

scientific article

Analysis of MHC class II antigen processing by quantitation of peptides that constitute nested sets

scientific article

Analysis of Monoclonal Antibody Sequence and Post-translational Modifications by Time-controlled Proteolysis and Tandem Mass Spectrometry

scientific article

Analysis of histones in Xenopus laevis. I. A distinct index of enriched variants and modifications exists in each cell type and is remodeled during developmental transitions

scientific article

Analysis of histones in Xenopus laevis. II. mass spectrometry reveals an index of cell type-specific modifications on H3 and H4.

scientific article

Analysis of intact proteins on a chromatographic time scale by electron transfer dissociation tandem mass spectrometry

scientific article

Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry

scientific article

Analysis of protein phosphorylation by mass spectrometry

scientific article

Analysis of proteins and peptides on a chromatographic timescale by electron-transfer dissociation MS.

scientific article

Androgen receptor phosphorylation. Regulation and identification of the phosphorylation sites

scientific article

Aurora B phosphorylates centromeric MCAK and regulates its localization and microtubule depolymerization activity

scientific article

C-terminal phosphorylation of murine testis-specific histone H1t in elongating spermatids

scientific article

CDK9 regulates AR promoter selectivity and cell growth through serine 81 phosphorylation

scientific article

Cathepsin L proteolytically processes histone H3 during mouse embryonic stem cell differentiation

scientific article

Characterization of histones and their post-translational modifications by mass spectrometry

scientific article published on 6 December 2006

Characterization of phosphorylation sites on histone H1 isoforms by tandem mass spectrometry

scientific article

Characterization of the peptide binding specificity of the HLA class I alleles B*38:01 and B*39:06.

scientific article

Chemical derivatization of histones for facilitated analysis by mass spectrometry.

scientific article

Codependent functions of RSK2 and the apoptosis-promoting factor TIA-1 in stress granule assembly and cell survival

scientific article

Comparative Bioinformatics Analyses and Profiling of Lysosome-Related Organelle Proteomes

scientific article

Complementary IMAC enrichment methods for HLA-associated phosphopeptide identification by mass spectrometry

scientific article

Comprehensive analysis of phosphorylation sites in Tensin1 reveals regulation by p38MAPK.

scientific article

Comprehensive phosphoprotein analysis of linker histone H1 from Tetrahymena thermophila

scientific article

Cortactin phosphorylation sites mapped by mass spectrometry

scientific article

Developmentally Regulated Post-translational Modification of Nucleoplasmin Controls Histone Sequestration and Deposition

scientific article

Drug hypersensitivity caused by alteration of the MHC-presented self-peptide repertoire

scientific article

Electron transfer dissociation of peptide anions

scientific article

Enrichment and site mapping of O-linked N-acetylglucosamine by a combination of chemical/enzymatic tagging, photochemical cleavage, and electron transfer dissociation mass spectrometry

scientific article

Expression patterns and post-translational modifications associated with mammalian histone H3 variants

scientific article

Extensive crosstalk between O-GlcNAcylation and phosphorylation regulates cytokinesis

scientific article

FAK phosphorylation sites mapped by mass spectrometry

scientific article

FANCG is phosphorylated at serines 383 and 387 during mitosis

scientific article

Front-end electron transfer dissociation: a new ionization source

scientific article

GSK3- and PRMT-1-dependent modifications of desmoplakin control desmoplakin-cytoskeleton dynamics

scientific article

Gene silencing: trans-histone regulatory pathway in chromatin

scientific article

HDM2-binding partners: interaction with translation elongation factor EF1alpha

scientific article

Histone H3 Thr 45 phosphorylation is a replication-associated post-translational modification in S. cerevisiae

scientific article

Histone methyltransferases direct different degrees of methylation to define distinct chromatin domains

scientific journal article

Identification by mass spectrometry of CD8(+)-T-cell Mycobacterium tuberculosis epitopes within the Rv0341 gene product

scientific article

Identification of a 17beta-hydroxysteroid dehydrogenase type 12 pseudogene as the source of a highly restricted BALB/c Meth A tumor rejection peptide

scientific article

Identification of a shared epitope recognized by melanoma-specific, HLA-A3-restricted cytotoxic T lymphocytes

scientific article

Identification of class I MHC-associated phosphopeptides as targets for cancer immunotherapy

scientific article published on 25 September 2006

Identification of novel and widely expressed cancer/testis gene isoforms that elicit spontaneous cytotoxic T-lymphocyte reactivity to melanoma

scientific article

Identification of phosphorylation sites in GIT1.

scientific article

Identification of phosphorylation sites in betaPIX and PAK1

scientific article

Identification of the Post-translational Modifications Present in Centromeric Chromatin

scientific article

Identification of the beta cell antigen targeted by a prevalent population of pathogenic CD8+ T cells in autoimmune diabetes.

scientific article

Identification of the peptide-binding motif recognized by the pigtail macaque class I MHC molecule Mane-A1*082:01 (Mane A*0301) ⬇️

scientific article published on January 26, 2012

Identification of the surfactant protein A receptor 210 as the unconventional myosin 18A.

scientific article

Identification of tumor-associated, MHC class II-restricted phosphopeptides as targets for immunotherapy

scientific article

Identification of yin-yang regulators and a phosphorylation consensus for male germ cell-associated kinase (MAK)-related kinase

scientific article

Increasing peptide identifications and decreasing search times for ETD spectra by pre-processing and calculation of parent precursor charge ⬇️

scientific article published on February 9, 2012

Insulin controls subcellular localization and multisite phosphorylation of the phosphatidic acid phosphatase, lipin 1.

scientific article

Intestinal Cell Kinase (ICK) Promotes Activation of mTOR Complex 1 (mTORC1) through Phosphorylation of Raptor Thr-908 ⬇️

scientific article published on February 22, 2012

Long-distance combinatorial linkage between methylation and acetylation on histone H3 N termini

scientific article

MAPKAP kinase 2 phosphorylates tristetraprolin on in vivo sites including Ser178, a site required for 14-3-3 binding

scientific article

Mass spectrometric identification of phosphorylation sites of rRNA transcription factor upstream binding factor

scientific article

Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications

scientific article published on 14 December 2004

Methods for analyzing peptides and proteins on a chromatographic timescale by electron-transfer dissociation mass spectrometry

scientific article

Methods for the detection of paxillin post-translational modifications and interacting proteins by mass spectrometry

scientific article

Methylation of histone H3K23 blocks DNA damage in pericentric heterochromatin during meiosis

scientific article

Mitogen-activated protein kinase signaling mediates phosphorylation of polycomb ortholog Cbx7.

scientific article

Modifications of human histone H3 variants during mitosis

scientific article

N-terminal alpha-methylation of RCC1 is necessary for stable chromatin association and normal mitosis

scientific article

NRMT is an alpha-N-methyltransferase that methylates RCC1 and retinoblastoma protein

scientific article

Novel function of prothymosin alpha as a potent inhibitor of human immunodeficiency virus type 1 gene expression in primary macrophages

scientific article

Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications

scientific article

Nuclear import of TFIIB is mediated by Kap114p, a karyopherin with multiple cargo-binding domains

scientific article

O-GlcNAc modification of the coat protein of the potyvirus Plum pox virus enhances viral infection

scientific article

O-GlcNAc regulates FoxO activation in response to glucose

scientific article

O-GlcNAcylation of master growth repressor DELLA by SECRET AGENT modulates multiple signaling pathways in Arabidopsis

scientific article

O-GlcNAcylation of the Plum pox virus capsid protein catalyzed by SECRET AGENT: characterization of O-GlcNAc sites by electron transfer dissociation mass spectrometry

scientific article

O-Linked β-N-acetylglucosamine (O-GlcNAc) regulates emerin binding to barrier to autointegration factor (BAF) in a chromatin- and lamin B-enriched "niche".

scientific article

Optimization of electron transfer dissociation via informed selection of reagents and operating parameters

scientific article

Organismal differences in post-translational modifications in histones H3 and H4.

scientific article

Par3 controls epithelial spindle orientation by aPKC-mediated phosphorylation of apical Pins

scientific article

Pathways Mediating the Nuclear Import of Histones H3 and H4 in Yeast ⬇️

scientific article published on January 4, 2002

Paxillin phosphorylation sites mapped by mass spectrometry

scientific article

Peptide Sequence Analysis by Electron Transfer Dissociation Mass Spectrometry: A Web-Based Tutorial

scientific article

Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry

scientific article

Peptide-binding motifs associated with MHC molecules common in Chinese rhesus macaques are analogous to those of human HLA supertypes and include HLA-B27-like alleles

scientific article

Peptide-binding motifs of two common equine class I MHC molecules in Thoroughbred horses

scientific article

Periplasmic proteins of the extremophile Acidithiobacillus ferrooxidans: a high throughput proteomics analysis.

scientific article

Phosphoproteome analysis of capacitated human sperm. Evidence of tyrosine phosphorylation of a kinase-anchoring protein 3 and valosin-containing protein/p97 during capacitation

scientific article (publication date: 28 March 2003)

Phosphorylation and arginine methylation mark histone H2A prior to deposition during Xenopus laevis development

scientific article

Phosphorylation by casein kinase 2 regulates Nap1 localization and function

scientific article

Phosphorylation-dependent interaction between antigenic peptides and MHC class I: a molecular basis for the presentation of transformed self

scientific article

Pillars article: Characterization of peptides bound to the class I MHC molecule HLA-A2.1 by mass spectrometry. Science 1992. 255: 1261-1263.

scientific article

Posttranslational modification of CENP-A influences the conformation of centromeric chromatin

scientific article

Predominant occupation of the class I MHC molecule H-2Kwm7 with a single self-peptide suggests a mechanism for its diabetes-protective effect

scientific article

Preventing the spontaneous modification of an HLA-A2-restricted peptide at an N-terminal glutamine or an internal cysteine residue enhances peptide antigenicity

scientific article

Protein arginine methyltransferase Prmt5-Mep50 methylates histones H2A and H4 and the histone chaperone nucleoplasmin in Xenopus laevis eggs

scientific article

Protein derivatization and sequential ion/ion reactions to enhance sequence coverage produced by electron transfer dissociation mass spectrometry

scientific article

Protein identification using sequential ion/ion reactions and tandem mass spectrometry

scientific article

Protein phosphatase 1 regulates assembly and function of the beta-catenin degradation complex

scientific article

Protein profile of osteoarthritic human articular cartilage using tandem mass spectrometry

scientific article

Proteomic analysis and identification of the structural and regulatory proteins of the Rhodobacter capsulatus gene transfer agent

scientific article

Proteomic analysis of early melanosomes: identification of novel melanosomal proteins

scientific article

Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes

scientific article

RLIP76 (RalBP1) is an R-Ras effector that mediates adhesion-dependent Rac activation and cell migration

scientific article

RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena

scientific article

Resetting the epigenetic histone code in the MRL-lpr/lpr mouse model of lupus by histone deacetylase inhibition

scientific article

Serine 31 phosphorylation of histone variant H3.3 is specific to regions bordering centromeres in metaphase chromosomes

scientific article

Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression.

scientific article

Simian virus 40 small t antigen mediates conformation-dependent transfer of protein phosphatase 2A onto the androgen receptor

scientific article

Site-specific phosphorylation of the DNA damage response mediator rad9 by cyclin-dependent kinases regulates activation of checkpoint kinase 1

scientific article

Sorting of Pmel17 to melanosomes through the plasma membrane by AP1 and AP2: evidence for the polarized nature of melanocytes.

scientific article

Structure-based design of altered MHC class II-restricted peptide ligands with heterogeneous immunogenicity

scientific article

Substrate specificity of mammalian N-terminal α-amino methyltransferase NRMT

scientific article

TAB4 stimulates TAK1-TAB1 phosphorylation and binds polyubiquitin to direct signaling to NF-kappaB

scientific article

Talin phosphorylation sites mapped by mass spectrometry

scientific article

Tandem mass spectrometry for peptide and protein sequence analysis

scientific article

Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets

scientific article

The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA

scientific article

The Fanconi anemia core complex forms four complexes of different sizes in different subcellular compartments

scientific article

The antigenic identity of human class I MHC phosphopeptides is critically dependent upon phosphorylation status

scientific article

The common equine class I molecule Eqca-1*00101 (ELA-A3.1) is characterized by narrow peptide binding and T cell epitope repertoires

scientific article

The minor histocompatibility antigen HA-3 arises from differential proteasome-mediated cleavage of the lymphoid blast crisis (Lbc) oncoprotein

scientific article (publication date: 15 July 2003)

The platelet microparticle proteome

scientific article

The utility of ETD mass spectrometry in proteomic analysis

scientific article

The vertebrate Ndc80 complex contains Spc24 and Spc25 homologs, which are required to establish and maintain kinetochore-microtubule attachment

scientific article

Toward a protein profile of Escherichia coli: comparison to its transcription profile

scientific article

Trk activation of the ERK1/2 kinase pathway stimulates intermediate chain phosphorylation and recruits cytoplasmic dynein to signaling endosomes for retrograde axonal transport

scientific article

Use of selected reaction monitoring mass spectrometry for the detection of specific MHC class I peptide antigens on A3 supertype family members

scientific article

mTOR-dependent stimulation of the association of eIF4G and eIF3 by insulin

scientific article

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