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List of works by John Ashburner

A Symmetric Prior for the Regularisation of Elastic Deformations: Improved Anatomical Plausibility in Nonlinear Image Registration

scientific article published on 01 June 2020

A comparison between voxel-based cortical thickness and voxel-based morphometry in normal aging

scientific article published on 25 June 2009

A comparison of various MRI feature types for characterizing whole brain anatomical differences using linear pattern recognition methods

scientific article published on 02 June 2018

A fast diffeomorphic image registration algorithm

scientific article (publication date: 15 October 2007)

A global estimator unbiased by local changes

scientific article

A hierarchical Bayesian model to find brain-behaviour associations in incomplete data sets

scientific article published on 29 December 2021

A modality-adaptive method for segmenting brain tumors and organs-at-risk in radiation therapy planning

scientific article published on 22 March 2019

A plea for confidence intervals and consideration of generalizability in diagnostic studies.

scientific article published on 21 May 2008

A standardized [18F]-FDG-PET template for spatial normalization in statistical parametric mapping of dementia

scientific article published in October 2014

A tensor based morphometry study of longitudinal gray matter contraction in FTD.

scientific article published on 4 February 2007

A voxel-based morphometric study of ageing in 465 normal adult human brains

scientific article (publication date: July 2001)

Accuracy of dementia diagnosis: a direct comparison between radiologists and a computerized method

scientific article (publication date: November 2008)

Accurate automatic estimation of total intracranial volume: a nuisance variable with less nuisance

scientific article

Age- and sex-related variations in the brain white matter fractal dimension throughout adulthood: an MRI study

scientific article

An algorithm for learning shape and appearance models without annotations ⬇️

scientific article published on 30 April 2019

Assessing study-specific regional variations in fMRI signal.

scientific article published in February 2001

Atrophy progression in semantic dementia with asymmetric temporal involvement: a tensor-based morphometry study

scientific article published on 02 July 2007

Author response: Progressive neurodegeneration following spinal cord injury: Implications for clinical trials

scientific article published on 01 November 2018

Automated, high accuracy classification of Parkinsonian disorders: a pattern recognition approach

scientific article

Automatic classification of MR scans in Alzheimer's disease

scientific article published on 17 January 2008

Automatic detection of preclinical neurodegeneration: presymptomatic Huntington disease

scientific article

Automatic differentiation of anatomical patterns in the human brain: validation with studies of degenerative dementias

scientific article published on September 2002

Bayesian decoding of brain images.

scientific article published on 24 August 2007

Cerebral asymmetry and the effects of sex and handedness on brain structure: a voxel-based morphometric analysis of 465 normal adult human brains

scientific article (publication date: September 2001)

Changes in cerebral morphology consequent to peripheral autonomic denervation

scientific article published in April 2003

Characterization and correction of interpolation effects in the realignment of fMRI time series

scientific article published in January 2000

Characterizing aging in the human brainstem using quantitative multimodal MRI analysis

scientific article published on 20 August 2013

Classical and Bayesian inference in neuroimaging: applications

scientific article published in June 2002

Classical and Bayesian inference in neuroimaging: theory.

scientific article

Classification of Alzheimer's disease patients and controls with Gaussian processes

scientific article published in May 2012

Classification of Neurodegenerative Diseases Using Gaussian Process Classification with Automatic Feature Determination

scientific article published in August 2010

Combining multivariate voxel selection and support vector machines for mapping and classification of fMRI spatial patterns.

scientific article

Computational anatomy with the SPM software

scientific article (publication date: October 2009)

Computer-assisted imaging to assess brain structure in healthy and diseased brains

scientific article

Computing Brain Change over Time

scientific article published in 2015

Computing average shaped tissue probability templates

scientific article published on 24 December 2008

Confirmation of functional zones within the human subthalamic nucleus: patterns of connectivity and sub-parcellation using diffusion weighted imaging

scientific article

Connectivity derived thalamic segmentation in deep brain stimulation for tremor

scientific article published on 28 January 2018

Correlation between structural and functional changes in brain in an idiopathic headache syndrome

scientific article

Cortical grey matter and benzodiazepine receptors in malformations of cortical development. A voxel-based comparison of structural and functional imaging data

scientific article

Data sharing in neuroimaging research

scientific article (publication date: 2012)

Detecting bilateral abnormalities with voxel-based morphometry

scientific article published in November 2000

Diffeomorphic Image Registration

scientific article published in 2015

Diffeomorphic registration using geodesic shooting and Gauss–Newton optimisation ⬇️

scientific article published on January 7, 2011

Diffusion-based spatial priors for imaging

scientific article published on 8 August 2007

Disentangling in vivo the effects of iron content and atrophy on the ageing human brain

scientific article

Distributional assumptions in voxel-based morphometry

scientific article published in October 2002

Do we need to revise the tripartite subdivision hypothesis of the human subthalamic nucleus (STN)? Response to Alkemade and Forstmann

scientific article published on 23 January 2015

Dosage-sensitive X-linked locus influences the development of amygdala and orbitofrontal cortex, and fear recognition in humans

scientific article published on 4 September 2003

Dynamic monitoring of [11C]diprenorphine in rat brain using a prototype positron imaging device

scientific article published in December 1991

Dynamic positron emission tomography data-driven analysis using sparse Bayesian learning

scientific article

Early visual deprivation induces structural plasticity in gray and white matter

scientific article published in July 2005

Efficacy of spoken word comprehension therapy in patients with chronic aphasia: a cross-over randomised controlled trial with structural imaging

scientific article published on 05 November 2020

Embodied neurology: an integrative framework for neurological disorders.

scientific article published on 21 April 2016

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration

scientific article published on 13 January 2009

Evidence for segregated and integrative connectivity patterns in the human Basal Ganglia

scientific article published in July 2008

Example dataset for the hMRI toolbox

scientific article published on 11 June 2019

Frontal, midbrain and striatal dopaminergic function in early and advanced Parkinson's disease A 3D [(18)F]dopa-PET study

scientific article published in September 1999

Functional magnetic resonance imaging technology and traumatic brain injury rehabilitation: guidelines for methodological and conceptual pitfalls

scientific article

Functional neuroimaging of speech perception in six normal and two aphasic subjects

scientific article published in July 1999

Generative and recognition models for neuroanatomy

scientific article published in September 2004

Generative diffeomorphic modelling of large MRI data sets for probabilistic template construction.

scientific article

Genotype-phenotype interactions in primary dystonias revealed by differential changes in brain structure

scientific article published on April 2009

High-dimensional image registration using symmetric priors

scientific article

How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging

scientific article

Identification of neurobehavioural symptom groups based on shared brain mechanisms

scientific article published on 07 October 2019

Identifying global anatomical differences: Deformation-based morphometry

scientific article published in 1998

Identifying global anatomical differences: deformation-based morphometry

scientific article published in January 1998

Image distortion correction in fMRI: A quantitative evaluation

scientific article published in May 2002

Image registration using a symmetric prior--in three dimensions

scientific article published in April 2000

Imaging transient, randomly occurring neuropsychological events in single subjects with positron emission tomography: an event-related count rate correlational analysis

scientific article published in September 1994

Improved segmentation of deep brain grey matter structures using magnetization transfer (MT) parameter maps

scientific article published on 31 March 2009

In vivo distribution of opioid receptors in man in relation to the cortical projections of the medial and lateral pain systems measured with positron emission tomography

scientific article

Incorporating prior knowledge into image registration.

scientific article published in November 1997

Interpreting scan data acquired from multiple scanners: a study with Alzheimer's disease

scientific article

Kallmann's syndrome: mirror movements associated with bilateral corticospinal tract hypertrophy

scientific article published in March 1999

Kernel methods for fMRI pattern prediction

scientific article published in June 2008

Kernel regression for fMRI pattern prediction

scientific article

Learning arbitrary visuomotor associations: temporal dynamic of brain activity.

scientific article published in November 2001

Linear dimension reduction of sequences of medical images: II. Direct sum decomposition.

scientific article published in November 1995

Log-Euclidean free-form deformation

scientific article published on 3 March 2011

MRI analysis of an inherited speech and language disorder: structural brain abnormalities

scientific article

MRI and PET coregistration--a cross validation of statistical parametric mapping and automated image registration

scientific article published in May 1997

MRI investigation of the sensorimotor cortex and the corticospinal tract after acute spinal cord injury: a prospective longitudinal study

scientific article published on 02 July 2013

Measuring the Consistency of Global Functional Connectivity Using Kernel Regression Methods

scientific article published in May 2011

Methodology for Statistical Parametric Mapping of [ 18 F]Fluorodopa Uptake Rate Using Three-Dimensional PET 1 1Transcripts of the BRAINPET97 discussion of this chapter can be found in Section VIII

Modeling geometric deformations in EPI time series

scientific article published in May 2001

Modeling regional and psychophysiologic interactions in fMRI: the importance of hemodynamic deconvolution

scientific article published in May 2003

Multimodal Image Coregistration and Partitioning—A Unified Framework ⬇️

scientific article published on October 1, 1997

Multiparametric brainstem segmentation using a modified multivariate mixture of Gaussians

scientific article

Multiple Linear Regression: Bayesian Inference for Distributed and Big Data in the Medical Informatics Platform of the Human Brain Project

scholarly article published 5 January 2018

Multivariate decoding of brain images using ordinal regression.

scientific article

Multivariate dynamical modelling of structural change during development

scientific article published on 12 December 2016

Multivariate models of inter-subject anatomical variability

scientific article (publication date: 15 May 2011)

Navigation-related structural change in the hippocampi of taxi drivers

scientific article

Neural basis of an inherited speech and language disorder.

scientific article

Neurobiological origin of spurious brain morphological changes: A quantitative MRI study

scientific article

Neurolinguistics: structural plasticity in the bilingual brain

scientific article

Non-linear Registration

scientific article published in 2007

Nonlinear spatial normalization using basis functions

scientific article

Nonlinear spatial normalization using basis functions

scientific article published in 1999

Normal variation in fronto-occipital circuitry and cerebellar structure with an autism-associated polymorphism of CNTNAP2

scientific article

Objective Bayesian fMRI analysis-a pilot study in different clinical environments

scientific article published on 12 May 2015

OpenNFT: An open-source Python/Matlab framework for real-time fMRI neurofeedback training based on activity, connectivity and multivariate pattern analysis.

scientific article

Optimal deep brain stimulation site and target connectivity for chronic cluster headache

scientific article published on 13 October 2017

Optimization of 3-D MP-RAGE Sequences for Structural Brain Imaging

PRoNTo: pattern recognition for neuroimaging toolbox.

scientific article published on July 2013

Parametric non-rigid registration using a stationary velocity field

scientific article published in January 2012

Predicting clinical scores from magnetic resonance scans in Alzheimer's disease

scientific article

Preparing fMRI Data for Statistical Analysis

scientific article published in 2009

Prognostic and diagnostic potential of the structural neuroanatomy of depression

scientific article

Progression of structural neuropathology in preclinical Huntington's disease: a tensor based morphometry study.

scientific article

Progressive neurodegeneration following spinal cord injury: Implications for clinical trials.

scientific article published on 7 March 2018

Quantitation of [11C]diprenorphine cerebral kinetics in man acquired by PET using presaturation, pulse-chase and tracer-only protocols

scientific article

Real-time fMRI data for testing OpenNFT functionality.

scientific article published on 26 July 2017

Recommendations to improve imaging and analysis of brain lesion load and atrophy in longitudinal studies of multiple sclerosis

scientific article

Regional specificity of MRI contrast parameter changes in normal ageing revealed by voxel-based quantification (VBQ)

scientific article

Relationship between brainstem neurodegeneration and clinical impairment in traumatic spinal cord injury

scientific article

Rigid Body Registration

scientific article published in 2007

SPM: A history ⬇️

scientific article (publication date: 15 August 2012)

Segmentation

scientific article published in 2007

Simultaneous voxel-wise analysis of brain and spinal cord morphometry and microstructure within the SPM framework

scientific article published on 29 September 2020

Spatial normalization of brain images with focal lesions using cost function masking

scientific article published in August 2001

Spatial normalization of lesioned brains: performance evaluation and impact on fMRI analyses

scientific article published on 24 May 2007

Spatial registration and normalization of images

Speed-dependent responses in V5: A replication study

scientific article published in May 1999

Spinal cord grey matter segmentation challenge

scientific article

Statistical parametric mapping with 18F-dopa PET shows bilaterally reduced striatal and nigral dopaminergic function in early Parkinson's disease

scientific article

Structural correlates of preterm birth in the adolescent brain

scientific article published on 26 October 2009

Subthalamic deep brain stimulation sweet spots and hyperdirect cortical connectivity in Parkinson's disease

scientific article published on 12 July 2017

Symmetric diffeomorphic modeling of longitudinal structural MRI ⬇️

scientific article published on February 5, 2013

The critical relationship between the timing of stimulus presentation and data acquisition in blocked designs with fMRI.

scientific article

The first step for neuroimaging data analysis: DICOM to NIfTI conversion

scientific article

The influence of microsatellite polymorphisms in sex steroid receptor genes ESR1, ESR2 and AR on sex differences in brain structure

scientific article published on 25 June 2020

The neuroanatomy of autism: a voxel-based whole brain analysis of structural scans

scientific article

The precision of anatomical normalization in the medial temporal lobe using spatial basis functions

scientific article published in September 2002

The role of the medial temporal lobe in autistic spectrum disorders

scientific article

Tracking sensory system atrophy and outcome prediction in spinal cord injury

scientific article published on 20 August 2015

Unified segmentation

scientific article (publication date: July 2005)

Unified segmentation based correction of R1 brain maps for RF transmit field inhomogeneities (UNICORT)

scientific article

Utilizing temporal information in fMRI decoding: classifier using kernel regression methods

scientific article

Variational free energy and the Laplace approximation.

scientific article published on 20 October 2006

Voxel Based Morphometry

scientific article published in 2009

Voxel-Based Morphometry

scientific article published in 2007

Voxel-Based Morphometry of the Human Brain: Methods and Applications

article

Voxel-based cortical thickness measurements in MRI.

scientific article published on February 2008

Voxel-based morphometry of herpes simplex encephalitis

scientific article published in April 2001

Voxel-based morphometry–the methods

scientific article (publication date: June 2000)

Voxel-by-voxel comparison of automatically segmented cerebral gray matter--A rater-independent comparison of structural MRI in patients with epilepsy

scientific article

Voxel-wise analysis of diffusion tensor MRI improves the confidence of diagnosis of corticobasal degeneration non-invasively

scientific article

Why Voxel-Based Morphometry Should Be Used ⬇️

scientific article published on December 1, 2001

Wrapper Methods to Correct Mislabelled Training Data

scientific article published in June 2013

fMRI Activity Patterns in Human LOC Carry Information about Object Exemplars within Category

scientific article published in February 2008

fMRI activity patterns in human LOC carry information about object exemplars within category

scientific article

hMRI – A toolbox for quantitative MRI in neuroscience and clinical research

scientific article published on 21 January 2019

l-Dopa responsiveness is associated with distinctive connectivity patterns in advanced Parkinson's disease

scientific article published on 8 May 2017

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