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List of works by Paulien Hogeweg

A synergism between adaptive effects and evolvability drives whole genome duplication to fixation

scientific article

Auxin transport is sufficient to generate a maximum and gradient guiding root growth

scientific article published in October 2007

Bioinformatic analysis of functional differences between the immunoproteasome and the constitutive proteasome

scientific article published on 30 August 2003

Coevolution of gene families in prokaryotes

scientific article published on 29 January 2008

Computing an organism: on the interface between informatic and dynamic processes ⬇️

scientific article published on January 1, 2002

Eco-evolutionary dynamics, coding structure and the information threshold ⬇️

scientific article published on November 24, 2010

Error-threshold exists in fitness landscapes with lethal mutants

scientific article published on 7 February 2007

Evolution of Networks for Body Plan Patterning; Interplay of Modularity, Robustness and Evolvability ⬇️

scientific article published on October 6, 2011

Evolution of complexity in RNA-like replicator systems

scientific article

Evolution of evolvability and phenotypic plasticity in virtual cells

scientific article published on 28 February 2017

Evolution of evolvability in gene regulatory networks

scientific article (publication date: 11 July 2008)

Evolution of functional diversification within quasispecies

scientific article

Evolution of resource cycling in ecosystems and individuals

scientific article

Evolutionarily stable disequilibrium: endless dynamics of evolution in a stationary population

scientific article published in May 2016

Evolutionary Conflict Leads to Innovation: Symmetry Breaking in a Spatial Model of RNA-Like Replicators

scientific article published on 2 November 2017

Evolutionary dynamics of RNA-like replicator systems: A bioinformatic approach to the origin of life ⬇️

scientific article (publication date: September 2012)

Feed-forward loop circuits as a side effect of genome evolution

scientific article

Gene duplications contribute to the overrepresentation of interactions between proteins of a similar age.

scientific article

High cost enhances cooperation through the interplay between evolution and self-organisation

scientific article

In Silico Gene-Level Evolution Explains Microbial Population Diversity through Differential Gene Mobility

scientific article

In silico evo-devo: reconstructing stages in the evolution of animal segmentation

scientific article published on August 2016

Is RNA-dependent RNA polymerase essential for transposon control?

scientific article

James A. Shapiro: Evolution: a view from the twenty-first century: FT Press Science, Upper Saddle River, New Jersey 07458, ISBN 10: 0-13278093-3.

scientific article

Less Can Be More: RNA-Adapters May Enhance Coding Capacity of Replicators ⬇️

scientific article published on January 23, 2012

Metabolic adaptation after whole genome duplication.

scientific article published on 22 July 2009

Modelling Dictyostelium discoideum morphogenesis: the culmination

scientific article published in March 2002

Modelling Morphogenesis: From Single Cells to Crawling Slugs

article

Modelling the dynamics of viral suppressors of RNA silencing

scientific article published on 17 August 2011

Morphogengineering roots: comparing mechanisms of morphogen gradient formation

scientific article

Moving forward moving backward: directional sorting of chemotactic cells due to size and adhesion differences

scientific article

Multilevel selection in models of prebiotic evolution II: a direct comparison of compartmentalization and spatial self-organization

scientific article

Multilevel selection in models of prebiotic evolution: compartments and spatial self-organization

scientific article published on October 1, 2003

Mutation rates and evolution of multiple coding in RNA-based protocells

scientific article published on 4 October 2014

On the Origin of DNA Genomes: Evolution of the Division of Labor between Template and Catalyst in Model Replicator Systems ⬇️

scientific article published on March 24, 2011

Parasites Sustain and Enhance RNA-Like Replicators through Spatial Self-Organisation

scientific article

Pattern generation in molecular evolution: Exploitation of the variation in RNA landscapes

scientific article published on 01 July 1994

Phenotypic error threshold; additivity and epistasis in RNA evolution

scientific article

Regulome size in Prokaryotes: universality and lineage-specific variations

scientific article published on 18 June 2009

Resource distributions affect social learning on multiple timescales

scientific article published on 30 May 2009

Root system architecture from coupling cell shape to auxin transport

scientific article (publication date: 16 December 2008)

Segment-specific adhesion as a driver of convergent extension

scientific article (publication date: February 2015)

Space and the persistence of male-killing endosymbionts in insect populations

scientific article published in December 2002

The RNA silencing pathway: the bits and pieces that matter

scientific article

The Roots of Bioinformatics in Theoretical Biology ⬇️

scientific article published on March 31, 2011

The consequences of base pair composition biases for regulatory network organization in prokaryotes

scientific article

The dynamics and efficacy of antiviral RNA silencing: A model study

scientific article

The effect of stochasticity on the lac operon: an evolutionary perspective

scientific article

The evolution of strand preference in simulated RNA replicators with strand displacement: implications for the origin of transcription

scientific article published on 11 August 2008

The impact of long-distance horizontal gene transfer on prokaryotic genome size

scientific article

The origin of a primordial genome through spontaneous symmetry breaking

scientific article published on 15 August 2017

The role of complex formation and deleterious mutations for the stability of RNA-like replicator systems

scientific article

The role of genome and gene regulatory network canalization in the evolution of multi-trait polymorphisms and sympatric speciation

scientific article

Toward a Theory of Multilevel Evolution: Long-Term Information Integration Shapes the Mutational Landscape and Enhances Evolvability ⬇️

scientific article published on January 1, 2012

Virtual Genomes in Flux: An Interplay of Neutrality and Adaptability Explains Genome Expansion and Streamlining ⬇️

scientific article published on January 10, 2012

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