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List of works by Edward C. Holmes

10 The Emergence of Dengue: Past Present and Future

17th Century Variola Virus Reveals the Recent History of Smallpox.

scientific article published on 5 December 2016

A Bat-Derived Putative Cross-Family Recombinant Coronavirus with a Reovirus Gene

scientific article

A Divergent Articulavirus in an Australian Gecko Identified Using Meta-Transcriptomics and Protein Structure Comparisons

scientific article published on 04 June 2020

A Divergent Hepatitis D-Like Agent in Birds

scientific article published on 17 December 2018

A Diverse Range of Novel RNA Viruses in Geographically Distinct Honey Bee Populations.

scientific article published on 17 May 2017

A Genomic Perspective on the Origin and Emergence of SARS-CoV-2

scientific article published on 26 March 2020

A Novel Bat Coronavirus Closely Related to SARS-CoV-2 Contains Natural Insertions at the S1/S2 Cleavage Site of the Spike Protein

scientific article published on 11 May 2020

A Novel Bat Coronavirus Closely Related to SARS-CoV-2 Contains Natural Insertions at the S1/S2 Cleavage Site of the Spike Protein

scientific article published on 01 October 2020

A Novel Hepadnavirus Identified in an Immunocompromised Domestic Cat in Australia.

scientific article published on 17 May 2018

A Novel Rubi-Like Virus in the Pacific Electric Ray (Tetronarce californica) Reveals the Complex Evolutionary History of the Matonaviridae

scientific article published in 2021

A Reptilian Endogenous Foamy Virus Sheds Light on the Early Evolution of Retroviruses:

A Simple Method to Detect Candidate Overlapping Genes in Viruses Using Single Genome Sequences

article

A cluster-randomised controlled trial to test the efficacy of facemasks in preventing respiratory viral infection among Hajj pilgrims

scientific article published on 2 October 2014

A complex mosaic of enteroviruses shapes community-acquired hand, foot and mouth disease transmission and evolution within a single hospital

article

A divergent hepatitis D-like agent in birds

scientific article published on 23 September 2018

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

scientific article published on 15 July 2020

A dynamic nomenclature proposal for SARS-CoV-2 to assist genomic epidemiology

scientific article published on 20 April 2020

A generic assay for whole-genome amplification and deep sequencing of enterovirus A71.

scientific article published on 19 February 2015

A household case evidences shorter shedding of SARS-CoV-2 in naturally infected cats compared to their human owners

scientific article published on 15 December 2020

A likelihood method for the detection of selection and recombination using nucleotide sequences

scientific article published in March 1997

A metagenomic survey of microbes in honey bee colony collapse disorder

scientific article (publication date: 12 October 2007)

A molecular epidemiological study of Australian bat lyssavirus

scientific article published in February 2003

A molecular portrait of maternal sepsis from Byzantine Troy

scientific article (publication date: 10 January 2017)

A multigene analysis of the phylogenetic relationships among the flaviviruses (Family: Flaviviridae) and the evolution of vector transmission

scientific article

A new coronavirus associated with human respiratory disease in China

scientific article published on 03 February 2020

A novel bat coronavirus reveals natural insertions at the S1/S2 cleavage site of the Spike protein and a possible recombinant origin of HCoV-19

scientific article (preprint)

A novel gyrovirus is abundant in yellow-eyed penguin (Megadyptes antipodes) chicks with a fatal respiratory disease

scientific article published in February 2023

A phylogenetic survey of recombination frequency in plant RNA viruses

article

A reevaluation of the higher taxonomy of viruses based on RNA polymerases

scientific article

A reptilian endogenous foamy virus sheds light on the early evolution of retroviruses

article published in 2019

A revised evolutionary history of hepatitis B virus (HBV).

scientific article published in June 2002

A single amino acid change in the response regulator PhoP acquired during Yersinia pestis evolution affects PhoP target gene transcription and polymyxin B susceptibility

scientific article published on 12 February 2018

A single positively selected West Nile viral mutation confers increased virogenesis in American crows

scientific article (publication date: September 2007)

A tick-borne segmented RNA virus contains genome segments derived from unsegmented viral ancestors

scientific article published on 21 April 2014

A time-series meta-transcriptomic analysis reveals the seasonal, host, and gender structure of mosquito viromes

scientific article published on 02 February 2022

Acute hepatitis C infection after sexual exposure.

scientific article

Adaptation and immunity

scientific article

Adaptive evolution of bat dipeptidyl peptidase 4 (dpp4): implications for the origin and emergence of Middle East respiratory syndrome coronavirus

scientific article published in 2013

After the pandemic: perspectives on the future trajectory of COVID-19

scientific article published in 2021

An Atypical Parvovirus Drives Chronic Tubulointerstitial Nephropathy and Kidney Fibrosis

An Ecosystems Perspective on Virus Evolution and Emergence

scientific article published on 16 November 2019

An allometric relationship between the genome length and virion volume of viruses

scientific article published on 26 March 2014

An emergent clade of SARS-CoV-2 linked to returned travellers from Iran

scientific article (preprint)

An emergent clade of SARS-CoV-2 linked to returned travellers from Iran

scientific article published in January 2020

Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates.

scientific article published in July 2014

Analysis of a new hepatitis C virus type and its phylogenetic relationship to existing variants

scientific article published on May 1992

Analysis of flavivirus envelope proteins reveals variable domains that reflect their antigenicity and may determine their pathogenesis

scientific article

Analysis of viral (zucchini yellow mosaic virus) genetic diversity during systemic movement through a Cucurbita pepo vine

scientific article

Ancient co-speciation of simian foamy viruses and primates

scientific article (publication date: 17 March 2005)

Ancient invasion of an extinct gammaretrovirus in cetaceans

scientific article published on 29 March 2013

Ancient lentiviruses leave their mark

scholarly article

Application of broad-spectrum resequencing microarray for genotyping rhabdoviruses

scientific article

Arboretum and Puerto Almendras viruses: two novel rhabdoviruses isolated from mosquitoes in Peru

scientific article published on 13 January 2014

Assessing the epidemiological effect of wolbachia for dengue control

scientific article

Assessment of Coronavirus Disease 2019 Intervention Strategies in the Nordic Countries Using Genomic Epidemiology

publication published on 03 January 2022

Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool

At least four MHC class I genes are transcribed in the horse: phylogenetic analysis suggests an unusual evolutionary history for the MHC in this species

scientific article published on June 1995

Australia as a global sink for the genetic diversity of avian influenza A virus

scientific article published on 10 May 2022

Australian terrestrial environments harbour extensive RNA virus diversity

scientific article published in May 2024

Author Correction: A new coronavirus associated with human respiratory disease in China

scientific article published on 01 April 2020

Author Correction: The evolutionary history of vertebrate RNA viruses

scientific article published in Nature

Autochthonous Japanese Encephalitis with Yellow Fever Coinfection in Africa

scientific article published in April 2017

Avian influenza virus exhibits distinct evolutionary dynamics in wild birds and poultry

scientific article published on 26 June 2015

Avian influenza virus exhibits rapid evolutionary dynamics

scientific article

Avian oncogenesis induced by lymphoproliferative disease virus: a neglected or emerging retroviral pathogen?

scientific article published on 18 December 2013

Bat IFITM3 restriction depends on S-palmitoylation and a polymorphic site within the CD225 domain

scientific article published on 11 December 2019

Bats are a major natural reservoir for hepaciviruses and pegiviruses

scientific article

Bayesian coalescent analysis reveals a high rate of molecular evolution in GB virus C

scientific article

Bayesian estimates of the evolutionary rate and age of hepatitis B virus

scientific article

Benign Rabbit Calicivirus in New Zealand

scientific article published on 31 March 2017

Benign Rabbit Caliciviruses Exhibit Evolutionary Dynamics Similar to Those of Their Virulent Relatives

scientific article published on 10 August 2016

Biodiversity and evolution of Imjin virus and Thottapalayam virus in Crocidurinae shrews in Zhejiang Province, China

scientific article

Bioinformatics resources for SARS-CoV-2 discovery and surveillance

scientific article published on 08 January 2021

Biological consequences of deletions within the 3'-untranslated region of flaviviruses may be due to rearrangements of RNA secondary structure

scientific article published on November 1999

Blood molecular markers associated with COVID-19 immunopathology and multi-organ damage

scientific article published on 03 November 2020

Boosting virology in Brazil

scientific article

CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data

scientific article published on 28 April 2020

COVID-19 Futures: A Framework for Exploring Medium and Long-Term Impacts

scientific article published on 3 September 2020

Can Sequence Phylogenies Safely Infer the Origin of the Global Virome?

scientific article published on 16 April 2019

Causes of HIV diversity

scientific article published in July 1995

Cell Walls and the Convergent Evolution of the Viral Envelope

scientific article

Characterisation of the faecal virome of captive and wild Tasmanian devils using virus-like particles metagenomics and meta-transcriptomics

scientific article published on 15 October 2018

Characterization of the Gut Microbiome and Resistomes of Wild and Zoo-Captive Macaques

scientific article published on 01 January 2021

Characterizing the virome of Ixodes ricinus ticks from northern Europe.

scientific article published on 7 September 2017

Circumpolar diversification of the Ixodes uriae tick virome

scientific article published on 03 August 2020

Clade replacements in dengue virus serotypes 1 and 3 are associated with changing serotype prevalence

scientific article

Classification of hepatitis C virus into six major genotypes and a series of subtypes by phylogenetic analysis of the NS-5 region

scientific article (publication date: November 1993)

Clinical intervention and molecular characteristics of a dengue hemorrhagic fever outbreak in Timor Leste, 2005.

scientific article

Clustered mutations in HIV-1 gag are consistently required for escape from HLA-B27-restricted cytotoxic T lymphocyte responses.

scientific article

Co-circulation and persistence of genetically distinct saffold viruses, Denmark

scientific article published on October 2012

Co-circulation and persistence of multiple A/H3N2 influenza variants in China

scientific article published on 01 January 2019

Co-circulation of Hantaan, Kenkeme, and Khabarovsk Hantaviruses in Bolshoy Ussuriysky Island, China

scientific article

Co-circulation of multiple hemorrhagic fever diseases with distinct clinical characteristics in Dandong, China

scientific article

Co-circulation of three camel coronavirus species and recombination of MERS-CoVs in Saudi Arabia

scientific article published on 17 December 2015

Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance

scientific article published on 18 May 2022

Coding-Complete Genome Sequence of Yada Yada Virus, a Novel Alphavirus Detected in Australian Mosquitoes

scientific article published on 09 January 2020

Collecting and managing taxonomic data with NCBI-taxonomist

scientific article published on 16 December 2020

Comment on "Large-scale sequence analysis of avian influenza isolates".

scientific article published in September 2006

Comment on "Mutation rate and genotype variation of Ebola virus from Mali case sequences".

scientific article

Comment: Characterization of Two Historic Smallpox Specimens from a Czech Museum.

scientific article published on 28 September 2017

Comparative Phylodynamics of Rabbit Hemorrhagic Disease Virus in Australia and New Zealand

scientific article

Comparative Studies of RNA Virus Evolution

Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families

scientific article (publication date: 8 February 2017)

Comparative analysis of RNA virome composition in rabbits and associated ectoparasites

scientific article published on 18 March 2020

Comparative analysis of the complete genome sequence of the California MSW strain of myxoma virus reveals potential host adaptations

scientific article published in November 2013

Comparative analysis reveals adaptive evolution of bat IFITMs and a novel antiviral determinant

scientific article published on 17 August 2019

Comparative analysis reveals frequent recombination in the parvoviruses

scientific article published in December 2007

Comparative analysis reveals no consistent association between the secondary structure of the 3'-untranslated region of dengue viruses and disease syndrome.

scientific article

Comparative population dynamics of HIV-1 subtypes B and C: subtype-specific differences in patterns of epidemic growth.

scientific article

Comparative population dynamics of mosquito-borne flaviviruses

scientific article published on July 2003

Comparing the functions of equine and canine influenza H3N8 virus PA-X proteins: Suppression of reporter gene expression and modulation of global host gene expression

scientific article published on 14 June 2016

Comparison of intra- and inter-host genetic diversity in rabies virus during experimental cross-species transmission

scientific article published on 20 June 2019

Complete genome characterisation of a novel coronavirus associated with severe human respiratory disease in Wuhan, China

scientific article published on 25 January 2020

Complete genome of Aedes aegypti anphevirus in the Aag2 mosquito cell line.

scientific article

Complete sequence of two tick-borne flaviviruses isolated from Siberia and the UK: analysis and significance of the 5' and 3'-UTRs

scientific article published on May 1997

Complexities of Estimating Evolutionary Rates in Viruses

scientific article published on 28 January 2016

Contact heterogeneity, rather than transmission efficiency, limits the emergence and spread of canine influenza virus

scientific article (publication date: October 2014)

Continental synchronicity of human influenza virus epidemics despite climactic variation.

scientific article published on 11 January 2018

Contrasting the epidemiological and evolutionary dynamics of influenza spatial transmission

scientific article

Convergent and divergent sequence evolution in the surface envelope glycoprotein of human immunodeficiency virus type 1 within a single infected patient

scientific article published on June 1992

Correction for Batovska et al., "Coding-Complete Genome Sequence of Yada Yada Virus, a Novel Alphavirus Detected in Australian Mosquitoes"

scientific article published on 05 March 2020

Correction: Bat IFITM3 restriction depends on S-palmitoylation and a polymorphic site within the CD225 domain

scientific article published on 29 April 2020

Correction: Continental synchronicity of human influenza virus epidemics despite climactic variation

scientific article published on 7 February 2018

Correction: Molecular Epidemiology of A/H3N2 and A/H1N1 Influenza Virus during a Single Epidemic Season in the United States.

scientific article published on 15 December 2008

Correction: Phylodynamics and Human-Mediated Dispersal of a Zoonotic Virus.

scientific article

Correction: Stochastic Processes Are Key Determinants of Short-Term Evolution in Influenza A Virus

Correction: The Role of Selection in Shaping Diversity of Natural M. tuberculosis Populations.

scientific article published on 15 August 2013

Correction: The paradox of HBV evolution as revealed from a 16th century mummy.

scientific article published on 9 February 2018

Cross-Species Virus Transmission and the Emergence of New Epidemic Diseases

scientific article

Cross-protective immunity can account for the alternating epidemic pattern of dengue virus serotypes circulating in Bangkok

scientific article

Cross-species transmission of honey bee viruses in associated arthropods

scientific article

Cross-validation to select Bayesian hierarchical models in phylogenetics

scientific article published on 26 May 2016

Cyclic avian mass mortality in the northeastern United States is associated with a novel orthomyxovirus.

scientific article

Cyprinid herpesvirus 3 and its evolutionary future as a biological control agent for carp in Australia

scientific article published on 8 December 2016

Declining Growth Rate of West Nile Virus in North America

scientific article (publication date: March 2007)

Declining transition/transversion ratios through time reveal limitations to the accuracy of nucleotide substitution models.

scientific article

Deep sequencing reveals persistence of intra- and inter-host genetic diversity in natural and greenhouse populations of zucchini yellow mosaic virus.

scientific article published on 16 May 2012

Demographic histories of ERV-K in humans, chimpanzees and rhesus monkeys

scientific article (publication date: 10 October 2007)

Dengue Virus Serotype 2 from a Sylvatic Lineage Isolated from a Patient with Dengue Hemorrhagic Fever

scientific article (publication date: 2009)

Dengue virus in sub-tropical northern and central Viet Nam: population immunity and climate shape patterns of viral invasion and maintenance ⬇️

scientific article

Dengue virus type 3, Cuba, 2000-2002

scientific article published on May 2005

Dengue viruses cluster antigenically but not as discrete serotypes

scientific article published on September 2015

DengueInfo: A web portal to dengue information resources

scientific article

Detection and Circulation of a Novel Rabbit Hemorrhagic Disease Virus in Australia.

scientific article published in January 2017

Detection of TT virus among chimpanzees in the wild using a noninvasive technique

scientific article published on April 2004

Detection of hepatitis B virus infection in wild-born chimpanzees (Pan troglodytes verus): phylogenetic relationships with human and other primate genotypes

scientific article

Different evolutionary trajectories of European avian-like and classical swine H1N1 influenza A viruses.

scientific article

Different rates of substitution may produce different phylogenies of the eutherian mammals

scientific article published in September 1991

Differing epidemiological dynamics of influenza B virus lineages in Guangzhou, southern China, 2009-2010.

scientific article published on 11 September 2013

Dinucleotide Composition in Animal RNA Viruses Is Shaped More by Virus Family than by Host Species

scientific article published in February 2017

Discovering the phylodynamics of RNA viruses

scientific article

Discovery and Prevalence of Divergent RNA Viruses in European Field Voles and Rabbits

scientific article published on 31 December 2019

Discovery of a highly divergent coronavirus in the Asian house shrew from China illuminates the origin of the alphacoronaviruses

scientific article published on 21 June 2017

Discovery of a highly divergent hepadnavirus in shrews from China

article

Discovery of diverse polyomaviruses in bats and the evolutionary history of the Polyomaviridae

scientific article published on 12 December 2012

Discovery, diversity and evolution of novel coronaviruses sampled from rodents in China

scientific article published on 9 November 2014

Dissemination, divergence and establishment of H7N9 influenza viruses in China

scientific article

Distinct Lineages of Feline Parvovirus Associated with Epizootic Outbreaks in Australia, New Zealand and the United Arab Emirates

scientific article published on 13 December 2019

Distinct Viral Lineages from Fish and Amphibians Reveal the Complex Evolutionary History of Hepadnaviruses

scientific article

Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic

scientific article

Distinct patterns of natural selection in the reverse transcriptase gene of HIV-1 in the presence and absence of antiretroviral therapy

scientific article published in August 2004

Distribution of surface protein variants among hyperinvasive meningococci: implications for vaccine design.

scientific article published on October 2004

Divergent Evolutionary Pathways of Myxoma Virus in Australia: Virulence Phenotypes in Susceptible and Partially Resistant Rabbits Indicate Possible Selection for Transmissibility

scientific article published in 2022

Divergent Influenza-Like Viruses of Amphibians and Fish Support an Ancient Evolutionary Association

scientific article published on 18 September 2020

Divergent Viruses Discovered in Arthropods and Vertebrates Revise the Evolutionary History of the Flaviviridae and Related Viruses

scientific article published in January 2016

Diverse Dengue Type 2 Virus Populations Contain Recombinant and Both Parental Viruses in a Single Mosquito Host

scientific article (publication date: April 2003)

Diverse RNA viruses in the venom-related microenvironment of different animal phyla

scientific article published in January 2024

Diverse and abundant resistome in terrestrial and aquatic vertebrates revealed by transcriptional analysis

scientific article published on 02 November 2020

Diversity and Evolution of Novel Invertebrate DNA Viruses Revealed by Meta-Transcriptomics

scientific article published on 25 November 2019

Diversity and evolution of avian influenza viruses in live poultry markets, free-range poultry and wild wetland birds in China.

scientific article published on 12 January 2016

Diversity and origin of dengue virus serotypes 1, 2, and 3, Bhutan

scientific article

Diversity, evolution and population dynamics of avian influenza viruses circulating in the live poultry markets in China

scientific article published on 18 February 2017

Diversity, evolution, and emergence of fish viruses

scientific article published on 13 June 2024

Does hepatitis C virus really form quasispecies?

scientific article published on 19 March 2010

Draft genome assembly of the invasive cane toad, Rhinella marina ⬇️

scientific article published on 01 September 2018

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

scientific article

Ecology and evolution of rabies virus in Europe

scientific article published in October 1999

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus

scientific article

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus

Emergence and Adaptation of a Novel Highly Pathogenic H7N9 Influenza Virus in Birds and Humans from a 2013 Human-Infecting Low-Pathogenic Ancestor

scientific article published on 25 October 2017

Emergence of a highly pathogenic avian influenza virus from a low-pathogenic progenitor

scientific article published on 05 February 2014

Emergence of a new lineage of dengue virus type 2 identified in travelers entering Western Australia from Indonesia, 2010-2012.

scientific article published on 30 January 2015

Emergence of the Asian 1 genotype of dengue virus serotype 2 in viet nam: in vivo fitness advantage and lineage replacement in South-East Asia

scientific article

Emerging Rabbit Hemorrhagic Disease Virus 2 (RHDVb), Australia

scientific article published in December 2015

Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission

scientific article

Endogenous Hepadnaviruses in the Genome of the Budgerigar (Melopsittacus undulatus) and the Evolution of Avian Hepadnaviruses ⬇️

scientific article (publication date: July 2012)

Endogenous Lentiviruses in the Ferret Genome ⬇️

scientific article published on January 11, 2012

Endogenous RNA viruses of plants in insect genomes ⬇️

scientific article (publication date: 5 June 2012)

Entrezpy: a Python library to dynamically interact with the NCBI Entrez databases

scientific article published on 01 November 2019

Epidemic dynamics revealed in dengue evolution.

scientific article

Epidemic establishment and cryptic transmission of Zika virus in Brazil and the Americas

scientific article

Epidemiological and evolutionary considerations of SARS-CoV-2 vaccine dosing regimes

scientific article published on 3 February 2021

Epidemiological dynamics and phylogeography of influenza virus in southern China

scientific article

Epidemiology and Diversity of Rickettsiales Bacteria in Humans and Animals in Jiangsu and Jiangxi provinces, China

scientific article published on 11 September 2019

Epidemiology: Sexual transmission of HIV in Africa

scientific article published on April 2003

Equine and Canine Influenza H3N8 Viruses Show Minimal Biological Differences Despite Phylogenetic Divergence

scientific article published on 22 April 2015

Error thresholds and the constraints to RNA virus evolution

scientific article

Establishment and cryptic transmission of Zika virus in Brazil and the Americas

scientific article (publication date: 24 May 2017)

Estimating evolutionary rates in giant viruses using ancient genomes.

scientific article

Estimating evolutionary rates using time-structured data: a general comparison of phylogenetic methods

scientific article

Evaluating the Adequacy of Molecular Clock Models Using Posterior Predictive Simulations

scientific article published on 10 July 2015

Evidence for an endogenous papillomavirus-like element in the platypus genome ⬇️

scientific article published on March 14, 2012

Evidence for differing evolutionary dynamics of A/H5N1 viruses among countries applying or not applying avian influenza vaccination in poultry

scientific article

Evidence for the non-quasispecies evolution of RNA viruses [corrected]

scientific article published on 01 June 2001

Evolution and Cryo-electron Microscopy Capsid Structure of a North American Bat Adenovirus and Its Relationship to Other Mastadenoviruses

scientific article

Evolution and phylogeography of the nonpathogenic calicivirus RCV-A1 in wild rabbits in Australia

scientific article

Evolution in health and medicine Sackler colloquium: The comparative genomics of viral emergence

scientific article

Evolution of Human Respiratory Syncytial Virus (RSV) over Multiple Seasons in New South Wales, Australia

Evolution of Human Respiratory Syncytial Virus (RSV) over Multiple Seasons in New South Wales, Australia

article

Evolution of Termite Symbiosis Informed by Transcriptome-Based Phylogenies

scientific article published on 17 October 2019

Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs

scientific article

Evolution of base composition and codon usage bias in the genus Flavivirus

scientific article

Evolution of bovine ephemeral fever virus in the Australian episystem

scientific article

Evolution of dengue virus in Mexico is characterized by frequent lineage replacement

scientific article published on 15 June 2010

Evolution of equine influenza virus in vaccinated horses

scientific article published on 6 February 2013

Evolution of genome size and complexity in the rhabdoviridae

scientific article published in February 2015

Evolution of major histocompatibility complex class I genes in Cetartiodactyls

scientific article published on 17 May 2003

Evolution of novel reassortant A/H3N2 influenza viruses in North American swine and humans, 2009-2011

scientific article

Evolution of structural proteins of feline immunodeficiency virus: molecular epidemiology and evidence of selection for change

scientific article published in March 1993

Evolution of the human immunodeficiency virus envelope gene is dominated by purifying selection.

scientific article published on September 2006

Evolution, epidemiology, and dispersal of flaviviruses revealed by molecular phylogenies

scientific article published on January 1, 2001

Evolutionary Basis of Codon Usage and Nucleotide Composition Bias in Vertebrate DNA Viruses

article

Evolutionary Virology at 40

article

Evolutionary analysis of variants of hepatitis C virus found in South-East Asia: comparison with classifications based upon sequence similarity.

scientific article published on December 1996

Evolutionary aspects of recombination in RNA viruses

scientific article

Evolutionary conservation of the PA-X open reading frame in segment 3 of influenza A virus

scientific article published on 5 September 2012

Evolutionary dynamics of human and avian metapneumoviruses

scientific article

Evolutionary dynamics of multiple sublineages of H5N1 influenza viruses in Nigeria from 2006 to 2008

scientific article

Evolutionary genetics and emergence of RNA virus diseases

Evolutionary genetics and the emergence of SARS Coronavirus

article

Evolutionary genetics and vector adaptation of recombinant viruses of the western equine encephalitis antigenic complex provides new insights into alphavirus diversity and host switching

scientific article

Evolutionary history and attenuation of myxoma virus on two continents

scientific article published in 2012

Evolutionary history and dynamics of dog rabies virus in western and central Africa

scientific article

Evolutionary history and phylogeography of human viruses

scientific article published on January 2008

Evolutionary history of MHC class I genes in the mammalian order Perissodactyla

scientific article published in September 1999

Evolutionary history of Simbu serogroup orthobunyaviruses in the Australian episystem

scientific article published on 26 June 2019

Evolutionary processes among sylvatic dengue type 2 viruses

scientific article

Evolutionary stasis of viruses?

scientific article published on 01 May 2019

Expanding the RNA Virosphere by Unbiased Metagenomics

scientific article published on 17 May 2019

Experimental Verification of Seed Transmission of Zucchini yellow mosaic virus

article

Exploring Host-Pathogen Interactions through Biological Control

scientific article published on 25 June 2015

Extensive Diversity of RNA Viruses in Australian Ticks

scientific article published on 7 August 2018

Extensive Diversity of RNA Viruses in Australian Ticks

scholarly article by Erin Harvey et al published 7 November 2018 in Journal of Virology

Extensive diversity and evolution of hepadnaviruses in bats in China

scientific article

Extensive diversity of Rickettsiales bacteria in two species of ticks from China and the evolution of the Rickettsiales

scientific article published on 30 July 2014

Extensive diversity of coronaviruses in bats from China

scientific article published on 3 April 2017

Extensive diversity of rickettsiales bacteria in ticks from Wuhan, China

scientific article published on 24 March 2017

Extensive genetic diversity and host range of rodent-borne coronaviruses

scientific article published on 01 July 2020

Extensive genetic diversity of Rickettsiales bacteria in multiple mosquito species

scientific article (publication date: 9 December 2016)

Extensive geographical mixing of 2009 human H1N1 influenza A virus in a single university community

scientific article

Extinction and rapid emergence of strains of dengue 3 virus during an interepidemic period

scientific article published on September 2002

Extinction rates can be estimated from molecular phylogenies

scientific article published in April 1994

Extremely rapid spread of human immunodeficiency virus type 1 BF recombinants in Argentina

scientific article published on 18 October 2006

Facemask against viral respiratory infections among Hajj pilgrims: A challenging cluster-randomized trial

scientific article published on 13 October 2020

Family level phylogenies reveal modes of macroevolution in RNA viruses

scientific article

Fecal Viral Diversity of Captive and Wild Tasmanian Devils Characterized Using Virion-Enriched Metagenomics and Metatranscriptomics

scientific article published on 15 May 2019

Feline Calicivirus Virulent Systemic Disease: Clinical Epidemiology, Analysis of Viral Isolates and In Vitro Efficacy of Novel Antivirals in Australian Outbreaks

scientific article published on 11 October 2021

Fever from the forest: prospects for the continued emergence of sylvatic dengue virus and its impact on public health

scientific article

Field and classroom initiatives for portable sequence-based monitoring of dengue virus in Brazil

scientific article published on 16 April 2021

Fitting the bill

scientific article published on 01 November 1993

Fluid Spatial Dynamics of West Nile Virus in the United States: Rapid Spread in a Permissive Host Environment

scientific article

Fogarty International Center collaborative networks in infectious disease modeling: lessons learnt in research and capacity building

scholarly article published by Edward C. Holmes in 2018

Foreword

Fourteen types of co-circulating recombinant enterovirus were associated with hand, foot, and mouth disease in children from Wenzhou, China

scientific article published on 2 July 2015

Francisella tularensis ssp. holarctica in Ringtail Possums, Australia

scientific article

Freezing viruses in time

scientific article

Frequent cross-species transmission of parvoviruses among diverse carnivore hosts

scientific article

Frequent in-migration and highly focal transmission of dengue viruses among children in Kamphaeng Phet, Thailand

scientific article

Frequent inter-species transmission and geographic subdivision in avian influenza viruses from wild birds

scientific article

Frequent intergenotypic recombination between the non-structural and structural genes is a major driver of epidemiological fitness in caliciviruses

scientific article published on 16 September 2021

Full genomic analysis of new variant rabbit hemorrhagic disease virus revealed multiple recombination events

scientific article published on 27 January 2015

Further characterization of 2 types of precore variant hepatitis B virus isolates from Hong Kong

scientific article

Future issues in RNA virus evolution

Gene duplication and phylogeography of North American members of the Hart Park serogroup of avian rhabdoviruses

scientific article

Gene duplication is infrequent in the recent evolutionary history of RNA viruses

scientific article

Gene flow and competitive exclusion of avian influenza A virus in natural reservoir hosts

scientific article published on 05 June 2009

Genealogical evidence for positive selection in the nef gene of HIV-1

scientific article

Genes, trees and infections: Molecular evidence in epidemiology

scientific article published in July 1994

Genetic analysis of Israel acute paralysis virus: distinct clusters are circulating in the United States

scientific article

Genetic characterization of tick-borne flaviviruses: new insights into evolution, pathogenetic determinants and taxonomy

scientific article

Genetic constraints and the adaptive evolution of rabies virus in nature

scientific article published in January 2002

Genetic drift of human immunodeficiency virus type 1? ⬇️

scientific article published on January 1, 1998

Genome scale evolution of myxoma virus reveals host-pathogen adaptation and rapid geographic spread

scientific article published on 25 September 2013

Genome sequence analysis of Tamana bat virus and its relationship with the genus Flavivirus

scientific article

Genome-Scale Phylogenetic Analyses of Chikungunya Virus Reveal Independent Emergences of Recent Epidemics and Various Evolutionary Rates

scientific article published on 6 May 2011

Genome-scale evolution and phylodynamics of equine H3N8 influenza A virus

scientific article

Genome-scale phylogenetic analyses of chikungunya virus reveal independent emergences of recent epidemics and various evolutionary rates

scientific article published on 21 April 2010

Genome-scale rates of evolutionary change in bacteria

Genome-scale rates of evolutionary change in bacteria.

scientific article published on 30 November 2016

Genomic Analysis of the Emergence, Evolution, and Spread of Human Respiratory RNA Viruses

scientific article published on 23 May 2016

Genomic Epidemiology of 2015-2016 Zika Virus Outbreak in Cape Verde

scientific article published on 01 June 2020

Genomic Epidemiology of a Dengue Virus Epidemic in Urban Singapore

scientific article

Genomic Epidemiology of the First Wave of SARS-CoV-2 in Italy

scientific article published on 14 December 2020

Genomic Evidence of In-Flight Transmission of SARS-CoV-2 Despite Predeparture Testing

scientific article published on 5 January 2021

Genomic and phenotypic characterization of myxoma virus from Great Britain reveals multiple evolutionary pathways distinct from those in Australia.

scientific article

Genomic and phylogenetic features of the <i>Picobirnaviridae</i> suggest microbial rather than animal hosts

scientific article published in January 2024

Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding

scientific article published in February 2020

Genomic diversity and evolution of the lyssaviruses

scientific article published on 30 April 2008

Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand

scientific article published on 11 December 2020

Genomic reassortment of influenza A virus in North American swine, 1998-2011.

scientific article

Genomic variation of human immunodeficiency virus type 1 (HIV-1): molecular analyses of HIV-1 in sequential blood samples and various organs obtained at autopsy.

scientific article published on April 1994

Genomics and evolution of Aedes-borne flaviviruses

scientific article

Geographic and species association of hepatitis B virus genotypes in non-human primates.

scientific article published in September 2003

Global distribution of novel rhinovirus genotype

scientific article published on June 2008

Global rinderpest eradication: lessons learned and why humans should celebrate too

scientific article

Global transmission of influenza viruses from humans to swine

scientific article

Guidelines for identifying homologous recombination events in influenza A virus

scientific article

HIV clearance in an infant?

scientific article published in Nature

HIV evolution: CTL escape mutation and reversion after transmission

scientific article published on 8 February 2004

Hantavirus evolution in relation to its rodent and insectivore hosts: no evidence for codivergence

scientific article

Heading Off an Influenza Pandemic

scientific article published in Science

Heterosexual transmission of hepatitis C virus

scientific article published in October 1993

Hidden diversity and evolution of viruses in market fish

scientific article published on 01 July 2018

High levels of antibiotic resistance gene expression among birds living in a wastewater treatment plant

scholarly article published 5 November 2018

High rate of viral evolution associated with the emergence of carnivore parvovirus

scientific article

High rates of molecular evolution in hantaviruses

scientific article

High resolution metagenomic characterization of complex infectomes in paediatric acute respiratory infection

scientific article published on 03 March 2020

High-Resolution Metatranscriptomics Reveals the Ecological Dynamics of Mosquito-Associated RNA Viruses in Western Australia

scientific article published on 21 June 2017

High-resolution analysis of intrahost genetic diversity in dengue virus serotype 1 infection identifies mixed infections

scientific article published on 16 November 2011

High-resolution phylogenetic analysis of hepatitis C virus adaptation and its relationship to disease progression

scientific article published on April 2004

Highly Divergent Dengue Virus Type 2 in Traveler Returning from Borneo to Australia

scientific article published on December 2016

Hitchhiking and the population genetic structure of avian influenza virus

scientific article

Homologous recombination in GB virus C/hepatitis G virus

scientific article published in February 2001

Homologous recombination is very rare or absent in human influenza A virus

scientific article published on 19 March 2008

Host and viral features of human dengue cases shape the population of infected and infectious Aedes aegypti mosquitoes

scientific article published on 14 May 2013

Host species barriers to influenza virus infections

scientific article published in April 2006

Host-specific parvovirus evolution in nature is recapitulated by in vitro adaptation to different carnivore species.

scientific article

How accurately can we assess zoonotic risk?

scientific article

Human Adaptation of Ebola Virus during the West African Outbreak

scientific article

Human Tick-Borne Diseases in Australia

article

Human immunodeficiency virus. Phylogeny and the origin of HIV-1.

scientific article

Human land use impacts viral diversity and abundance in a New Zealand river

scientific article published on 04 April 2022

Human pegivirus in brain tissue of a patient with encephalitis

scientific article published on 05 October 2019

Identification and evolution of avian endogenous foamy viruses

scientific article published on 01 July 2019

Identification of 2019-nCoV related coronaviruses in Malayan pangolins in southern China

scientific article

Identification of A Novel Papillomavirus Associated with Squamous Cell Carcinoma in A Domestic Cat

scientific article published on 20 January 2020

Identification of A Novel Picorna-Like Virus, Burpengary Virus, that is Negatively Associated with Chlamydial Disease in the Koala

scientific article published on 02 March 2019

Identification of Novel Astroviruses in the Gastrointestinal Tract of Domestic Cats

scientific article published on 12 November 2020

Identification of a Novel Equine Papillomavirus in Semen from a Thoroughbred Stallion with a Penile Lesion

scientific article published on 04 August 2019

Identification of a Novel Picorna-Like Virus, Burpengary Virus, That Is Negatively Associated with Chlamydial Disease in the Koala

Identification of diverse arthropod associated viruses in native Australian fleas

scientific article published on 09 July 2019

Identification of diverse full-length endogenous betaretroviruses in megabats and microbats

scientific article (publication date: 27 March 2013)

Identification of diverse groups of endogenous gammaretroviruses in mega- and microbats

scientific article published on 13 June 2012

Identification of genotypes of hepatitis C virus by sequence comparisons in the core, E1 and NS-5 regions

scientific article published in May 1994

Identification of hepatitis C virus in the common bed bug - a potential, but uncommon route for HCV infection?

scientific article published on 11 June 2020

Identification of novel and diverse rotaviruses in rodents and insectivores, and evidence of cross-species transmission into humans

scientific article published on 22 April 2016

Identification of novel bat coronaviruses sheds light on the evolutionary origins of SARS-CoV-2 and related viruses

Identifying SARS-CoV-2 related coronaviruses in Malayan pangolins

scientific article published on 26 March 2020

Identifying the Risk of SARS-CoV-2 Infection and Environmental Monitoring in Airborne Infectious Isolation Rooms (AIIRs)

scientific article published on 28 September 2020

Immune and artificial selection in the haemagglutinin (H) glycoprotein of measles virus

scientific article published in October 2001

Immune selection for altered antigen processing leads to cytotoxic T lymphocyte escape in chronic HIV-1 infection

scientific article

Importation and co-circulation of multiple serotypes of dengue virus in Sarawak, Malaysia

scientific article

In vivo distribution and cytopathology of variants of human immunodeficiency virus type 1 showing restricted sequence variability in the V3 loop.

scientific article published on September 1994

Increased positive selection pressure in persistent (SSPE) versus acute measles virus infections

scientific article published in June 2002

Increased virulence of rabbit haemorrhagic disease virus associated with genetic resistance in wild Australian rabbits (Oryctolagus cuniculus)

scientific article

Infectious KoRV-related retroviruses circulating in Australian bats

scientific article published on 13 April 2020

Inferring Phylogenies. By Joseph Felsenstein. Sunderland (Massachusetts): Sinauer Associates. $59.95. xx + 664 p; ill.; index. ISBN: 0–87893–177–5. 2004

scholarly article by Edward C. Holmes published June 2004 in The Quarterly Review of Biology

Inferring population history from molecular phylogenies

scientific article published in July 1995

Inferring the inter-host transmission of influenza A virus using patterns of intra-host genetic variation.

scientific article

Inferring the rate and time-scale of dengue virus evolution

scientific article published on January 2003

Inferring the timescale of dengue virus evolution under realistic models of DNA substitution.

scientific article

Influenza Viruses in Mice: Deep Sequencing Analysis of Serial Passage and Effects of Sialic Acid Structural Variation

scientific article published on 13 November 2019

Influenza virus reservoirs and intermediate hosts: dogs, horses, and new possibilities for influenza virus exposure of humans

scientific article

Insights into the Evolutionary History of an Emerging Livestock Pathogen: Porcine Circovirus 2

scientific article

Inter-Seasonal Influenza is Characterized by Extended Virus Transmission and Persistence

scientific article published on 24 June 2015

Interplay between co-divergence and cross-species transmission in the evolutionary history of bat coronaviruses.

scientific article published on 16 January 2018

Intra- and interhost evolutionary dynamics of equine influenza virus

scientific article

Intra-host growth kinetics of dengue virus in the mosquito Aedes aegypti

scientific article published on 02 December 2019

Intrahost dynamics of antiviral resistance in influenza A virus reflect complex patterns of segment linkage, reassortment, and natural selection

scientific article published on 7 April 2015

Intrahost evolutionary dynamics of canine influenza virus in naive and partially immune dogs

scientific article

Intrapatient escape in the A*0201-restricted epitope SLYNTVATL drives evolution of human immunodeficiency virus type 1 at the population level

scientific article published on July 2005

Introductions and evolution of human-origin seasonal influenza a viruses in multinational swine populations.

scientific article

Invasion and Maintenance of Dengue Virus Type 2 and Type 4 in the Americas

scientific article

Investigation of potential HIV transmission to the patients of an HIV-infected surgeon

scientific article published on 01 April 1993

Investigation of the pattern of hepatitis C virus sequence diversity in different geographical regions: implications for virus classification. The International HCV Collaborative Study Group

scientific article published in October 1995

Invited commentary: Evaluating vaccination programs using genetic sequence data

scientific article

Is the Quasispecies Concept Relevant to RNA Viruses? ⬇️

scientific article published on January 1, 2002

Isolation and characterization of a novel arenavirus harbored by Rodents and Shrews in Zhejiang province, China

scientific article published on 12 December 2014

Isolation of a new strain of the flavivirus cell fusing agent virus in a natural mosquito population from Puerto Rico

scientific article published on April 2006

Isolation of a novel species of flavivirus and a new strain of Culex flavivirus (Flaviviridae) from a natural mosquito population in Uganda

scientific article

JC virus evolution and its association with human populations

scientific article

Kolente virus, a rhabdovirus species isolated from ticks and bats in the Republic of Guinea

scientific article published on 23 September 2013

Koolpinyah and Yata viruses: two newly recognised ephemeroviruses from tropical regions of Australia and Africa.

scientific article

Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts

scientific article

Ledantevirus: a proposed new genus in the Rhabdoviridae has a strong ecological association with bats.

scientific article

Level of gene expression is a major determinant of protein evolution in the viral order Mononegavirales

scientific article

Limited Intrahost Diversity and Background Evolution Accompany 40 Years of Canine Parvovirus Host Adaptation and Spread

scientific article published on 12 December 2019

Limited Sustained Local Transmission of HIV-1 CRF01_AE in New South Wales, Australia.

scientific article

Lineage extinction and replacement in dengue type 1 virus populations are due to stochastic events rather than to natural selection

scientific article

Long intervals of stasis punctuated by bursts of positive selection in the seasonal evolution of influenza A virus

scientific article

Long-term evolution of the Luteoviridae: time scale and mode of virus speciation

scientific article

Long-term transmission of defective RNA viruses in humans and Aedes mosquitoes

scientific article

Loss of Viral Control in Early HIV‐1 Infection Is Temporally Associated with Sequential Escape from CD8+T Cell Responses and Decrease in HIV–1–Specific CD4+and CD8+T Cell Frequencies

article

Low evolutionary rate of infectious pancreatic necrosis virus (IPNV) in Italy is associated with reduced virulence in trout

article

Low frequency of paleoviral infiltration across the avian phylogeny

scientific article

Malaria: The gorilla connection

scientific article published in September 2010

Malpais spring virus is a new species in the genus vesiculovirus.

scientific article

Meta-Transcriptomic Comparison of the RNA Viromes of the Mosquito Vectors Culex pipiens and Culex torrentium in Northern Europe

scientific article published on 06 November 2019

Meta-Transcriptomic Discovery of a Divergent Circovirus and a Chaphamaparvovirus in Captive Reptiles with Proliferative Respiratory Syndrome

scientific article published on 25 September 2020

Meta-Transcriptomic Identification of Divergent Amnoonviridae in Fish

scientific article published on 04 November 2020

Meta-transcriptomic analysis of the virome and microbiome of the invasive Indian myna (Acridotheres tristis) in Australia ⬇️

scientific article published on 07 December 2021

Meta-transcriptomic analysis of virus diversity in urban wild birds with paretic disease

scientific article published on 24 June 2020

Meta-transcriptomic identification of Trypanosoma spp. in native wildlife species from Australia

scientific article published on 05 September 2020

Meta-transcriptomic identification of hepatitis B virus in cerebrospinal fluid in patients with central nervous system disease

scientific article published on 01 August 2019

Meta-transcriptomics and the evolutionary biology of RNA viruses

scientific article published on 27 October 2017

Meta-transcriptomics reveals a diverse antibiotic resistance gene pool in avian microbiomes

article

Meta-transcriptomics reveals potential virus transfer between <i>Aedes communis</i> mosquitoes and their parasitic water mites

scientific article published in 2022

Metagenomic discovery and co-infection of diverse wobbly possum disease viruses and a novel hepacivirus in Australian brushtail possums

scientific article published on 01 January 2019

Metagenomic discovery and co-infection of diverse wobbly possum disease viruses and a novel hepacivirus in Australian brushtail possums

scientific article published in 2019

Metagenomic sequencing reveals a lack of virus exchange between native and invasive freshwater fish across the Murray-Darling Basin, Australia ⬇️

scientific article

Metatranscriptomic Identification of Diverse and Divergent RNA Viruses in Green and Chlorarachniophyte Algae Cultures

scientific article published on 19 October 2020

Metatranscriptomics as a tool to identify fungal species and subspecies in mixed communities

Metatranscriptomics as a tool to identify fungal species and subspecies in mixed communities - a proof of concept under laboratory conditions

scientific article published on 08 August 2019

MicrobiologyThe Evolution and Emergence of RNA Viruses. Oxford Series in Ecology and Evolution. By EdwardC.Holmes. Oxford and New York: Oxford University Press. $130.00 (hardcover); $60.00 (paper). xii 254 p.; ill.; index. ISBN: 9780199211128 (hc); 9

article

Microevolution of Dengue Viruses Circulating among Primary School Children in Kamphaeng Phet, Thailand

scientific article

Microevolution of canine influenza virus in shelters and its molecular epidemiology in the United States

scientific article

Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds

scientific article published on 18 October 2011

Mitochondrial markers for molecular identification of Aedes mosquitoes (Diptera: Culicidae) involved in transmission of arboviral disease in West Africa

scientific article published on January 2005

Mixed infection and the genesis of influenza virus diversity

scientific article

Model phylogenies to explain the real world

scientific article published on October 1994

Molecular Clocks and the Puzzle of RNA Virus Origins

scientific article

Molecular Evolution and Emergence of H5N6 Avian Influenza Virus in Central China

scientific article published on 12 April 2017

Molecular Evolution and Intraclade Recombination of Enterovirus D68 during the 2014 Outbreak in the United States

scientific article published on 9 December 2015

Molecular Evolution and Phylogeography of Co-circulating IHNV and VHSV in Italy

scientific article published on 23 August 2016

Molecular Surveillance for Lymphoproliferative Disease Virus in Wild Turkeys (Meleagris gallopavo) from the Eastern United States

scientific article published on 21 April 2015

Molecular epidemiology and evolutionary dynamics of betanodavirus in southern Europe

scientific article published on 20 October 2011

Molecular epidemiology of A/H3N2 and A/H1N1 influenza virus during a single epidemic season in the United States

scientific article

Molecular epidemiology of Rabbit Haemorrhagic Disease Virus in Australia: when one became many

scientific article

Molecular epidemiology of an outbreak of infection with hepatitis C virus in recipients of anti-D immunoglobulin

scientific article published in May 1995

Molecular epidemiology of dengue type 2 virus in Venezuela: evidence for in situ virus evolution and recombination ⬇️

scientific article published on December 1, 2001

Molecular epidemiology of dengue virus type 3 in Venezuela.

scientific article published on June 2003

Molecular epidemiology of dengue virus--the time for big science

scientific article published on November 1998

Molecular evolution and antigenic variation of European brown hare syndrome virus (EBHSV).

scientific article

Molecular evolution of dengue 2 virus in Puerto Rico: positive selection in the viral envelope accompanies clade reintroduction

scientific article

Molecular evolution of the insect-specific flaviviruses

scientific article

Molecular evolutionary dynamics of Ross River virus and implications for vaccine efficacy

scientific article

Molecular investigation of human immunodeficiency virus (HIV) infection in a patient of an HIV-infected surgeon

scientific article published in June 1993

Molecular variation, evolution and geographical distribution of louping ill virus

scientific article published on October 1, 1997

Mother-to-child transmission of HIV infection and CTL escape through HLA-A2-SLYNTVATL epitope sequence variation

article

Multiple Incursions and Recurrent Epidemic Fade-Out of H3N2 Canine Influenza A Virus in the United States

scientific article published on 31 July 2018

Multiple Sources of Genetic Diversity of Influenza A Viruses during the Hajj

scientific article

Multiple introductions of the Old World begomovirus Tomato yellow leaf curl virus into the New World ⬇️

scientific article

Multiple reassortment events in the evolutionary history of H1N1 influenza A virus since 1918

scientific article published on 15 February 2008

Multiple recombinant dengue type 1 viruses in an isolate from a dengue patient

scientific article

Multiyear persistence of 2 pandemic A/H1N1 influenza virus lineages in West Africa

scientific article

Myxoma virus and the Leporipoxviruses: an evolutionary paradigm

scientific article published on 6 March 2015

Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus

scientific article

Networks and groups within the genus Neisseria: analysis of argF, recA, rho, and 16S rRNA sequences from human Neisseria species

scientific article published in June 1999

New inferences from tree shape: numbers of missing taxa and population growth rates

scientific article

New world bats harbor diverse influenza A viruses

scientific article published in 2013

Newly identified viral genomes in pangolins with fatal disease

scientific article published on 01 January 2020

Next step in the ongoing arms race between myxoma virus and wild rabbits in Australia is a novel disease phenotype

scientific article published on 14 August 2017

Ngoye virus: a novel evolutionary lineage within the genus Flavivirus

scientific article published in November 2006

Niakha virus: a novel member of the family Rhabdoviridae isolated from phlebotomine sandflies in Senegal

scientific article published on 14 June 2013

No detectable effect of Mel on the prevalence and abundance of the RNA virome of

scientific article published on 25 July 2018

No evidence for intra-segment recombination of 2009 H1N1 influenza virus in swine

scientific article published on 30 October 2011

Nonsystematic Reporting Biases of the SARS-CoV-2 Variant Mu Could Impact Our Understanding of the Epidemiological Dynamics of Emerging Variants

scientific article published on 5 April 2023

Novel RNA viruses associated with Plasmodium vivax in human malaria and Leucocytozoon parasites in avian disease

scientific article published on 30 December 2019

Novel hepaci- and pegi-like viruses in native Australian wildlife and non-human primates

scientific article published on 01 July 2020

Novel hepatitis D-like agents in vertebrates and invertebrates

Novel hepatitis D-like agents in vertebrates and invertebrates

scientific article published on 15 July 2019

Novel non-parametric models to estimate evolutionary rates and divergence times from heterochronous sequence data.

scientific article

On being the right size

scientific article

On the origin and evolution of the human immunodeficiency virus (HIV).

scientific article

Ongoing spillover of Hantaan and Gou hantaviruses from rodents is associated with hemorrhagic fever with renal syndrome (HFRS) in China

scientific article

Origin and Evolution of Viruses. Esteban Domingo , Robert Webster , John Holland

article

Origin and phylodynamics of rabbit hemorrhagic disease virus

scientific article published on 16 September 2009

Origin of the São Paulo Yellow Fever epidemic of 2017-2018 revealed through molecular epidemiological analysis of fatal cases

scientific article published on 31 December 2019

Origins, evolution, and vector/host coadaptations within the genus Flavivirus

scientific article

Out of Africa: a molecular perspective on the introduction of yellow fever virus into the Americas

scientific article published on 18 May 2007

PHYRN: a robust method for phylogenetic analysis of highly divergent sequences

scientific article

Pandemics: spend on surveillance, not prediction

scientific article published in Nature

Pandemics–Keep Calm and Carry On.

scientific article published on 4 February 2014

Parasite Microbiome Project: Systematic Investigation of Microbiome Dynamics within and across Parasite-Host Interactions

scientific article published on 18 July 2017

Partial immunity and SARS-CoV-2 mutations—Response

scientific article published on 23 April 2021

Passive sexual transmission of human immunodeficiency virus type 1 variants and adaptation in new hosts

scientific article published on July 2006

Pathogen population bottlenecks and adaptive landscapes: overcoming the barriers to disease emergence

scientific article published in August 2016

Patterns of Intra- and Interhost Nonsynonymous Variation Reveal Strong Purifying Selection in Dengue Virus ⬇️

scientific article (publication date: October 2003)

Persistence of multiple genetic lineages within intrahost populations of Ross River virus

scientific article

Persistent infections in immunocompromised hosts are rarely sources of new pathogen variants

scientific article published on 28 July 2017

Phylodynamic analysis of the emergence and epidemiological impact of transmissible defective dengue viruses

scientific article

Phylodynamics and human-mediated dispersal of a zoonotic virus

scientific article (publication date: 28 October 2010)

Phylodynamics of Enterovirus A71-Associated Hand, Foot, and Mouth Disease in Viet Nam.

scientific article published on 17 June 2015

Phylodynamics of H5N1 avian influenza virus in Indonesia

scientific article published on 11 May 2012

Phylogenetic Evidence for Deleterious Mutation Load in RNA Viruses and Its Contribution to Viral Evolution

article

Phylogenetic Evidence for Frequent Positive Selection and Recombination in the Meningococcal Surface Antigen PorB

article

Phylogenetic analysis of multiple heterosexual transmission events involving subtype b of HIV type 1.

scientific article

Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses

scientific article published on October 2003

Phylogenetic analysis reveals rapid evolutionary dynamics in the plant RNA virus genus tobamovirus

scientific article published on 14 September 2010

Phylogenetic analysis reveals the emergence, evolution and dispersal of carnivore parvoviruses.

scientific article

Phylogenetic analysis reveals the global migration of seasonal influenza A viruses

scientific article

Phylogenetic evidence for adaptive evolution of dengue viruses in nature.

scientific article published on July 2002

Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus tomato yellow leaf curl virus

scientific article

Phylogenetic evidence for recombination in dengue virus

scientific article published on March 1999

Phylogenetic evidence for the rapid evolution of human B19 erythrovirus

scientific article published in April 2006

Phylogenetic profiles reveal evolutionary relationships within the "twilight zone" of sequence similarity

scholarly article

Phylogenetic relationships among rhabdoviruses inferred using the L polymerase gene.

scientific article

Phylogenetic relationships and differential selection pressures among genotypes of dengue-2 virus

scientific article published on June 2002

Phylogeny and origins of hantaviruses harbored by bats, insectivores, and rodents

scientific article

Phylogeography and evolutionary history of reassortant H9N2 viruses with potential human health implications

scientific article

Phylogeography of Influenza A(H3N2) Virus in Peru, 2010-2012.

scientific article

Phylogeography of recently emerged DENV-2 in southern Viet Nam

scientific article

Phylogeography of the spring and fall waves of the H1N1/09 pandemic influenza virus in the United States

scientific article

Phylogeography, population dynamics, and molecular evolution of European bat lyssaviruses

scientific article published on August 2005

Physician-scientists are needed now more than ever.

scientific article

Plague's progress ⬇️

scientific article published on October 26, 2011

Plasmodium falciparum malaria in 1st–2nd century CE southern Italy

scientific article (publication date: December 2016)

Polymorphisms in Nef Associated with Different Clinical Outcomes in HIV Type 1 Subtype C-Infected Children

article

Population dynamics of HIV-1 inferred from gene sequences.

scientific article

Population dynamics of flaviviruses revealed by molecular phylogenies

scientific article

Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1.

scientific article published on 23 March 2006

Population structure and evolution of the Bacillus cereus group.

scientific article

Positive selection results in frequent reversible amino acid replacements in the G protein gene of human respiratory syncytial virus.

scientific article

Positively charged amino acid substitutions in the e2 envelope glycoprotein are associated with the emergence of venezuelan equine encephalitis virus

scientific article

Predicting virus emergence amid evolutionary noise

scientific article published on October 2017

Presence of oseltamivir-resistant pandemic A/H1N1 minor variants before drug therapy with subsequent selection and transmission.

scientific article

Primer Master: a new program for the design and analysis of PCR primers

scientific article

Prior Evidence of Putative NovelRhinovirusSpecies, Australia

article

Properties and abundance of overlapping genes in viruses

scientific article published on 01 January 2020

Publisher Correction: Sudden emergence of human infections with H7N9 avian influenza A virus in Hubei province, central China.

scientific article

Punctuated evolution of myxoma virus: rapid and disjunct evolution of a recent viral lineage in Australia

article

Punctuated evolution of myxoma virus: rapid and disjunct evolution of a recent viral lineage in Australia

scientific article published on 03 April 2019

Puzzling Origins of the Ebola Outbreak in the Democratic Republic of the Congo, 2014.

scientific article published on 22 July 2015

Quantifying influenza virus diversity and transmission in humans

scientific article

RNA virus genomics: a world of possibilities

scientific article

RNA viruses in hymenopteran pollinators: evidence of inter-Taxa virus transmission via pollen and potential impact on non-Apis hymenopteran species

scientific article

Rabbit haemorrhagic disease virus 2 (GI.2) is replacing endemic strains of RHDV in the Australian landscape within 18 months of its arrival.

scientific article published in November 2017

Random codon re-encoding induces stable reduction of replicative fitness of Chikungunya virus in primate and mosquito cells

scientific article

Rapid evolutionary dynamics of zucchini yellow mosaic virus

scientific article

Rapid turnover of intra-host genetic diversity in Zucchini yellow mosaic virus

scientific article

Rates of evolutionary change in viruses: patterns and determinants

scientific article (publication date: April 2008)

Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis

scientific article

Reassortment events among swine influenza A viruses in China: implications for the origin of the 2009 influenza pandemic

scientific article

Recombination between sequences of hepatitis B virus from different genotypes

scientific article

Recombination in evolutionary genomics

scientific article

Recombination is associated with an outbreak of novel highly pathogenic porcine reproductive and respiratory syndrome viruses in China

scientific article published on 24 July 2013

Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences

scientific article

Reconstructing the complex evolutionary history of hepatitis B virus

scientific article published on July 1999

Red fox viromes in urban and rural landscapes

scientific article published on 01 July 2020

Redefining the invertebrate RNA virosphere

scientific article published on 23 November 2016

Reduced positive selection in vector-borne RNA viruses

scientific article published on 01 December 2002

Reemergence and Autochthonous Transmission of Dengue Virus, Eastern China, 2014

scientific article

Reply to 'Reconciling disparate estimates of viral genetic diversity during human influenza infections'

scientific article published on 01 September 2019

Resolving the Origin of Rabbit Hemorrhagic Disease Virus: Insights from an Investigation of the Viral Stocks Released in Australia

scientific article published on 16 September 2015

Response to Brinkmann et al. "Re-assembly of 19th century smallpox vaccine genomes reveals the contemporaneous use of horsepox and horsepox-related viruses in the United States"

scientific article published on 04 December 2020

Revealing COVID-19 Transmission by SARS-CoV-2 Genome Sequencing and Agent Based Modelling

scientific article published on 22 April 2020

Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling

scientific article published on 09 July 2020

Revealing the Micro-scale Signature of Endemic Zoonotic Disease Transmission in an African Urban Setting

scientific article

Revealing the history of infectious disease epidemics through phylogenetic trees

scientific article published on July 1995

Reverse engineering field isolates of myxoma virus demonstrates that some gene disruptions or loss of function do not explain virulence changes observed in the field

scientific article published on 2 August 2017

Role of multiple hosts in the cross-species transmission and emergence of a pandemic parvovirus

scientific article

S1 gene-based phylogeny of infectious bronchitis virus: An attempt to harmonize virus classification

scientific article

SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse

scientific article published in 2021

SARS-CoV-2 replicates in respiratory ex vivo organ cultures of domestic ruminant species

scientific article published on 24 November 2020

SWAN: sliding window analysis of nucleotide sequence variability

scientific article published in June 1998

Seasonal drivers of the epidemiology of arthropod-borne viruses in Australia

scientific article

Second-pandemic strain of Vibrio cholerae from the Philadelphia cholera outbreak of 1849.

scientific article published on 8 January 2014

Secondary structure of the 3'-untranslated region of yellow fever virus: implications for virulence, attenuation and vaccine development ⬇️

scientific article published on July 1, 1997

Segmental configuration and putative origin of the reassortant orbivirus, epizootic hemorrhagic disease virus serotype 6, strain Indiana

scientific article published on 9 January 2012

Selection for robustness in mutagenized RNA viruses

scientific article

Selection for specific sequences in the external envelope protein of human immunodeficiency virus type 1 upon primary infection

scientific article published on June 1993

Selection pressures in the capsid genes of plant RNA viruses reflect mode of transmission

article

Selection-driven evolution of emergent dengue virus

scientific article published on 27 June 2003

Seqotron: a user-friendly sequence editor for Mac OS X.

scientific article published on 17 February 2016

Sequence analysis of in vivo defective interfering-like RNA of influenza A H1N1 pandemic virus

scientific article

Sequence analysis of the equid herpesvirus 2 chemokine receptor homologues E1, ORF74 and E6 demonstrates high sequence divergence between field isolates

scientific article published on September 2007

Sequence data as evidence

scientific article published in Nature

Sequence variability in the 5' non-coding region of hepatitis C virus: identification of a new virus type and restrictions on sequence diversity.

scientific article published in April 1993

Sexual transmission of single human immunodeficiency virus type 1 virions encoding highly polymorphic multisite cytotoxic T-lymphocyte escape variants

scientific article

Shared Common Ancestry of Rodent Alphacoronaviruses Sampled Globally

scientific article published on 30 January 2019

Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe

scientific article published in September 2012

Single Mutations in the VP2 300 Loop Region of the Three-Fold Spike of the Carnivore Parvovirus Capsid Can Determine Host Range.

scientific article

Slippery when wet: cross-species transmission of divergent coronaviruses in bony and jawless fish and the evolutionary history of the <i>Coronaviridae</i>

scientific article published on 31 May 2021

Social networks shape the transmission dynamics of hepatitis C virus

scientific article

Spatial but not temporal co-divergence of a virus and its mammalian host

scientific article

Spatial dynamics of human-origin H1 influenza A virus in North American swine

scientific article

Speciation. Spinning the web of life

scientific article published on September 1994

Spread of Canine Influenza A(H3N2) Virus, United States

scientific article published on 15 December 2017

Stochastic models of molecular evolution and the estimation of phylogeny and rates of nucleotide substitution in the hominoid primates

scholarly article by E HOLMES et al published December 1989 in Journal of Human Evolution

Stochastic processes are key determinants of short-term evolution in influenza a virus

scientific article

Structure and age of genetic diversity of dengue virus type 2 in Thailand

scientific article

Substitution Model Adequacy and Assessing the Reliability of Estimates of Virus Evolutionary Rates and Time Scales

scientific article published on 28 September 2015

Sudden emergence of human infections with H7N9 avian influenza A virus in Hubei province, central China

scientific article

Surveillance of Bat Coronaviruses in Kenya Identifies Relatives of Human Coronaviruses NL63 and 229E and Their Recombination History

scientific article published on 11 January 2017

Sustained RNA virome diversity in Antarctic penguins and their ticks

scientific article published on 14 April 2020

Sustained Wolbachia-mediated blocking of dengue virus isolates following serial passage in Aedes aegypti cell culture.

scientific article published in January 2019

Sustained transmission of dengue virus type 1 in the Pacific due to repeated introductions of different Asian strains

scientific article published on November 2004

Sustained virome diversity in Antarctic penguins and their ticks: geographical connectedness and no evidence for low pathogen pressure

scientific article published on 12 December 2019

Sylvatic Dengue Viruses Share the Pathogenic Potential of Urban/Endemic Dengue Viruses

scientific article

Systematic phylogenetic analysis of influenza A virus reveals many novel mosaic genome segments

scientific article published on 30 March 2013

Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans

scientific article

Testing the extent of sequence similarity among viroids, satellite RNAs, and hepatitis delta virus

scientific article published in January 2000

The "pressure pan" evolution of human erythrovirus B19 in the Amazon, Brazil

scientific article published on 15 August 2007

The Biological Object Notation (BON): a structured file format for biological data.

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The CD45 locus in cattle: allelic polymorphism and evidence for exceptional positive natural selection.

scientific article published in January 2001

The Ecology and Evolution of Influenza Viruses

scientific article published on 30 December 2019

The Ecology of Emergent Infectious Disease

scholarly article by Geoffrey P. Garnett & Edward C. Holmes published February 1996 in BioScience

The Evolution of Endogenous Viral Elements ⬇️

scientific article published on October 20, 2011

The Evolution of Viral Emergence

The Evolutionary Biology of Dengue Virus

scholarly article by Edward C. Holmes published 7 October 2008 in Novartis Foundation symposium

The Evolutionary Genetics of Emerging Viruses

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The Expanding Virosphere

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The Impact of Migratory Flyways on the Spread of Avian Influenza Virus in North America

The Origins of SARS-CoV-2: A Critical Review

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The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data

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The RNA virus quasispecies: fact or fiction?

scientific article published on 20 May 2010

The Recovery, Interpretation and Use of Ancient Pathogen Genomes

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The causes and consequences of HIV evolution

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The causes and consequences of genetic variation in dengue virus

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The complete nucleotide sequence of a New World simian foamy virus

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The contrasting phylodynamics of human influenza B viruses.

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The discovery of three new hare lagoviruses reveals unexplored viral diversity in this genus

scientific article published on 01 January 2019

The diverse liver viromes of Australian geckos and skinks are dominated by hepaciviruses and picornaviruses and reflect host taxonomy and habitat

scientific article published in January 2024

The diversity, evolution and origins of vertebrate RNA viruses

scientific article published on 13 August 2018

The early diversification of influenza A/H1N1pdm. ⬇️

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The early molecular epidemiology of the swine-origin A/H1N1 human influenza pandemic.

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The effect of gene overlapping on the rate of RNA virus evolution

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The emergence and evolution of the novel epidemic norovirus GII.4 variant Sydney 2012.

scientific article published on 25 December 2013

The emergence of rotavirus G12 and the prevalence of enteric viruses in hospitalized pediatric diarrheal patients in southern Vietnam

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The epidemic behavior of the hepatitis C virus

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The evolution and emergence of hantaviruses

scientific article published on 03 January 2015

The evolution of Ebola virus: Insights from the 2013–2016 epidemic

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The evolution of MHC class I genes in cattle

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The evolution of base composition and phylogenetic inference

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The evolution of epidemic influenza.

scientific article published on 30 January 2007

The evolution of large DNA viruses: combining genomic information of viruses and their hosts

scientific article published in October 2004

The evolution of viral emergence

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The evolutionary and epidemiological dynamics of the paramyxoviridae

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The evolutionary biology of dengue virus

scientific article published on January 2006

The evolutionary dynamics of bluetongue virus

scientific article published on 5 June 2010

The evolutionary dynamics of canid and mongoose rabies virus in Southern Africa

scientific article published on 31 March 2007

The evolutionary dynamics of human influenza B virus

scientific article published on 27 May 2008

The evolutionary dynamics of influenza A virus adaptation to mammalian hosts.

scientific article published on 04 February 2013

The evolutionary genetics and emergence of avian influenza viruses in wild birds

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The evolutionary history and dynamics of bat rabies virus

scientific article published on 18 April 2006

The evolutionary history of vertebrate RNA viruses

scientific article published on 4 April 2018

The extent of codon usage bias in human RNA viruses and its evolutionary origin

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The extent of homologous recombination in members of the genus Flavivirus

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The genesis and spread of reassortment human influenza A/H3N2 viruses conferring adamantane resistance

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The genetic diversification of the HIV type 1 gag p17 gene in patients infected from a common source

scientific article published on October 1995

The genomic and epidemiological dynamics of human influenza A virus

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The genomic rate of molecular adaptation of the human influenza A virus

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The hepatitis C virus epidemic among injecting drug users.

scientific article published on March 2005

The impact of host genetic diversity on virus evolution and emergence

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The impact of migratory flyways on the spread of avian influenza virus in North America

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The influence of recombination on the population structure and evolution of the human pathogen Neisseria meningitidis

scientific article published in June 1999

The introduction of fox rabies into Italy (2008-2011) was due to two viral genetic groups with distinct phylogeographic patterns

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The key roles of selection and migration in the ecology of Lyme borreliosis.

scientific article published in June 2002

The limits of molecular phylogeny: the case of the genus Flavivirus and the family Flaviviridae

scholarly article by Paolo Marinho de Andrade Zanotto et al published 1 April 1996 in Virus reviews & research : journal of the Brazilian Society for Virology

The mid-depth method and HIV-1: a practical approach for testing hypotheses of viral epidemic history

scientific article published in July 1999

The molecular epidemiology of dengue virus serotype 4 in Bangkok, Thailand

scientific article published on November 2004

The molecular epidemiology of human immunodeficiency virus type 1 in Edinburgh

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The ongoing COVID-19 epidemic in Minas Gerais, Brazil: insights from epidemiological data and SARS-CoV-2 whole genome sequencing

scientific article published on 29 July 2020

The ongoing COVID-19 epidemic in Minas Gerais, Brazil: insights from epidemiological data and SARS-CoV-2 whole genome sequencing.

scientific article published on 11 May 2020

The origin and global emergence of adamantane resistant A/H3N2 influenza viruses

scientific article published on 24 April 2009

The origin and phylogeography of dog rabies virus

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The origin, emergence and evolutionary genetics of dengue virus

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The origins and genomic diversity of American Civil War Era smallpox vaccine strains

scientific article published on 20 July 2020

The paradox of HBV evolution as revealed from a 16th century mummy.

scientific article published on 4 January 2018

The phylogenomics of evolving virus virulence

scholarly article by Jemma L Geoghegan published in October 2018

The phylogeography of human viruses

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The population genetics and evolutionary epidemiology of RNA viruses

scientific article published on April 2004

The proximal origin of SARS-CoV-2 ⬇️

scientific article published on 17 March 2020

The recombinant origin of emerging human norovirus GII.4/2008: intra-genotypic exchange of the capsid P2 domain

scientific article published on 13 January 2012

The role of alternative genetic codes in viral evolution and emergence

scientific article published on 28 May 2008

The role of evolutionary intermediates in the host adaptation of canine parvovirus

scientific article published on 23 November 2011

The role of pathogen genomics in assessing disease transmission

scientific article published on 11 May 2015

The role of selection in shaping diversity of natural M. tuberculosis populations

scientific article (publication date: August 2013)

The spread of type 2 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) in North America: a phylogeographic approach

scientific article published on 27 September 2013

The transferrin receptor genes of Trypanosoma equiperdum are less diverse in their transferrin binding site than those of the broad-host range Trypanosoma brucei

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The use of taxon-specific reference databases compromises metagenomic classification

scientific article published on 27 February 2020

Total Infectomes of 162 SARS-CoV-2 Cases Using Meta-Transcriptomic Sequencing

scientific article published on 08 December 2020

Total infectome investigation of diphtheritic stomatitis in yellow-eyed penguins (Megadyptes antipodes) reveals a novel and abundant megrivirus

scientific article published in November 2023

Tracing the origins of louping ill virus by molecular phylogenetic analysis ⬇️

scientific article published on May 1, 1998

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2

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Tracking virus outbreaks in the twenty-first century

scientific article published on 13 December 2018

Transcriptome Analysis and In Situ Hybridization for FcaGHV1 in Feline Lymphoma

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Transgenic Virus Resistance in Crop-WildCucurbita pepoDoes Not Prevent Vertical Transmission ofZucchini yellow mosaic virus

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Transmission of equine influenza virus during an outbreak is characterized by frequent mixed infections and loose transmission bottlenecks.

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Transmission of hepatitis B virus infection in Gambian families revealed by phylogenetic analysis.

scientific article published in July 2001

Trends in patterns of dengue transmission over 4 years in a pediatric cohort study in Nicaragua

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Unbiased Characterization of the Microbiome and Virome of Questing Ticks

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Unifying the epidemiological and evolutionary dynamics of pathogens

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Unique acquisition of cytotoxic T-lymphocyte escape mutants in infant human immunodeficiency virus type 1 infection

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Unmapped RNA Virus Diversity in Termites and their Symbionts

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Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses

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Unseasonal transmission of H3N2 influenza A virus during the swine-origin H1N1 pandemic.

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Using Metagenomics to Characterize an Expanding Virosphere

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Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses

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Vaccine nationalism and the dynamics and control of SARS-CoV-2

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Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses

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Variable immune-driven natural selection in the attachment (G) glycoprotein of respiratory syncytial virus (RSV).

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Variation in the gene for muscle-specific AMP deaminase is associated with insulin clearance, a highly heritable trait

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Variation in the number of expressed MHC genes in different cattle class I haplotypes.

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Viral CpG deficiency provides no evidence that dogs were intermediate hosts for SARS-CoV-2

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Viral Discovery in the Invasive Australian Cane Toad (Rhinella marina) Using Metatranscriptomic and Genomic Approaches ⬇️

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Viral biocontrol: grand experiments in disease emergence and evolution

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Viral evolution and the emergence of SARS coronavirus

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Viral evolution in the genomic age

scientific article published on 2 October 2007

Viral respiratory infections among Hajj pilgrims in 2013.

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Virological Sampling of Inaccessible Wildlife with Drones

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Virological Sampling of Inaccessible Wildlife with Drones

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Virological factors that increase the transmissibility of emerging human viruses

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Virology. 1918 and all that

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Virology. Helping the resistance

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Virology: Pathogenic passengers

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Virome analysis of New Zealand’s bats reveals cross-species viral transmission among the <i>Coronaviridae</i>

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Virome composition in marine fish revealed by meta-transcriptomics

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Virome heterogeneity and connectivity in waterfowl and shorebird communities

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Virome heterogeneity and connectivity in waterfowl and shorebird communities

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Viromes of Antarctic fish resemble the diversity found at lower latitudes

Virus genomes reveal factors that spread and sustained the Ebola epidemic

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Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic

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Virus-virus interactions and host ecology are associated with RNA virome structure in wild birds

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We shouldn't worry when a virus mutates during disease outbreaks

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What Does Virus Evolution Tell Us About Virus Origins?

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What can we predict about viral evolution and emergence? ⬇️

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What is the time-scale of hantavirus evolution?

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When HIV spread afar

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Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses

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Why do RNA viruses recombine?

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Widespread intra-serotype recombination in natural populations of dengue virus

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Wild birds as reservoirs for diverse and abundant gamma- and deltacoronaviruses

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Within-host genetic diversity of endemic and emerging parvoviruses of dogs and cats

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Yellow Fever Virus Exhibits Slower Evolutionary Dynamics than Dengue Virus

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Yersinia pestis and the plague of Justinian 541-543 AD: a genomic analysis.

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Yersinia pestis and the three plague pandemics--authors' reply

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Zucchini yellow mosaic virus (ZYMV, Potyvirus): vertical transmission, seed infection and cryptic infections

scientific article published on 08 July 2013

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