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List of works by Paul Blainey

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A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.

scientific article
Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis

scientific article
Nonspecifically bound proteins spin while diffusing along DNA.

scientific article
Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder

scientific article
The future is now: single-cell genomics of bacteria and archaea

scientific article
Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage

scientific article published on January 2013
Genomic analysis at the single-cell level

scientific article
Digital PCR provides sensitive and absolute calibration for high throughput sequencing

scientific article
Digital MDA for enumeration of total nucleic acid contamination

scientific article
Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB).

scientific article
Quantitative analysis of the human airway microbial ecology reveals a pervasive signature for cystic fibrosis

scientific article published on September 2012
Optimal estimation of diffusion coefficients from single-particle trajectories

scientific article published on February 28, 2014
Mobile genes in the human microbiome are structured from global to individual scales.

scientific article
Massively multiplexed nucleic acid detection using Cas13

scientific article published on 29 April 2020
Dissecting genomic diversity, one cell at a time

scientific article
A microfluidic platform enabling single-cell RNA-seq of multigenerational lineages

scientific article
Partial genome assembly for a candidate division OP11 single cell from an anoxic spring (Zodletone Spring, Oklahoma).

scientific article published on 9 September 2011
Tools for the Microbiome: Nano and Beyond

scientific article published on 22 December 2015
Replication

scientific article published on 01 September 2014
Diffusion Constant of a Nonspecifically Bound Protein Undergoing Curvilinear Motion along DNA†

scientific article published on 06 March 2008
Multiplexed single-molecule assay for enzymatic activity on flow-stretched DNA.

scientific article published on 15 April 2007
Optofluidic cell selection from complex microbial communities for single-genome analysis

scientific article
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: IV. viral proteinase slides along DNA to locate and process its substrates

scientific article published on 7 October 2012
Virtual microfluidics for digital quantification and single-cell sequencing

scientific article published on August 2016
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: II. adenovirus proteinase is activated in an unusual one-dimensional biochemical reaction

scientific article published on 7 October 2012
A Single-cell genome for Thiovulum sp.

scientific article
Sampling distributions and the bootstrap

scientific article published on June 2015
Self-encapsulation of poly-2,7-fluorenes in a dendrimer matrix

scientific article published in July 2001
What Is Your Conceptual Definition of "Cell Type" in the Context of a Mature Organism?

scientific article published on 01 March 2017
Points of significance: nested designs. For studies with hierarchical noise sources, use a nested analysis of variance approach

scientific article published in October 2014
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: I. binding to DNA AND to hexon of the precursor to protein VI, pVI, of human adenovirus

scientific article published on 7 October 2012
Massively parallel screening of synthetic microbial communities

scientific article published on 11 June 2019
An immune-cell signature of bacterial sepsis

scientific article published on 17 February 2020
Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens

scientific article published on 27 February 2019
Laser microdissection of the alveolar duct enables single-cell genomic analysis

scientific article
Molecular sled is an eleven-amino acid vehicle facilitating biochemical interactions via sliding components along DNA.

scientific article
Molecular sled sequences are common in mammalian proteins

scientific article published on 8 February 2016
Combinatorial drug discovery in nanoliter droplets

article published in the Proceedings of the National Academy of Sciences of the United States of America
Multiplexed and high-throughput neuronal fluorescence imaging with diffusible probes

scientific article published on 26 September 2019
Multiplexed enrichment and genomic profiling of peripheral blood cells reveal subset-specific immune signatures

scientific article published on 23 January 2019
Sliding on DNA: From Peptides to Small Molecules.

scientific article
Simple Bulk Readout of Digital Nucleic Acid Quantification Assays.

scientific article published on 24 September 2015
Nucleic acid cleavage with a hyperthermophilic Cas9 from an uncultured Ignavibacterium

scientific article published on 28 October 2019
Author Correction: Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants

scientific article published on 9 November 2023
Genome-wide tiled detection of circulating Mycobacterium tuberculosis cell-free DNA using Cas13

scientific article published on 31 March 2023
DENT-seq for genome-wide strand-specific identification of DNA single-strand break sites with single-nucleotide resolution

scientific article published on 21 December 2020
Correction: Digital PCR provides sensitive and absolute calibration for high throughput sequencing

scientific article published on 19 November 2009
Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants

scientific article published on 7 February 2022
Positive interactions are common among culturable bacteria

scientific article published on 05 November 2021
Pooled genetic perturbation screens with image-based phenotypes

scientific article published in 2022

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