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List of works by Andrés Moya

A Sliding Window-Based Method to Detect Selective Constraints in Protein-Coding Genes and Its Application to RNA Viruses

article

A genetic background with low mutational robustness is associated with increased adaptability to a novel host in an RNA virus

scientific article published on 20 August 2009

A membrane computing simulator of trans-hierarchical antibiotic resistance evolution dynamics in nested ecological compartments (ARES).

scientific article published on 5 August 2015

A new subtype of hepatitis C virus genotype 1: complete genome and phylogenetic relationships of an Equatorial Guinea isolate.

scientific article published in June 2006

A novel intracellular mutualistic bacterium in the invasive ant Cardiocondyla obscurior ⬇️

scientific article published on 14 July 2015

A small microbial genome: the end of a long symbiotic relationship?

scientific article

Abundance and distribution of the highly iterated palindrome 1 (HIP1) among prokaryotes ⬇️

scientific article published on September 1, 2011

Active and Secretory IgA-Coated Bacterial Fractions Elucidate Dysbiosis in Clostridium difficile Infection

scientific article

Active and secreted IgA-coated bacterial fractions from the human gut reveal an under-represented microbiota core

scientific article

Adaptive evolution in GroEL from distantly related endosymbiotic bacteria of insects.

scientific article

Aequorin-expressing yeast emits light under electric control

scientific article published on 01 February 2011

Aggregated Distribution as an Explanation for the Paradox of Plankton and Collective Animal Behavior

scientific article published in 2022

Altered metabolism of gut microbiota contributes to chronic immune activation in HIV-infected individuals.

scientific article

An in-depth study of HD 174966 with CoRoT photometry and HARPS spectroscopy

scientific article published in Astronomy and Astrophysics

Analysis of and function predictions for previously conserved hypothetical or putative proteins in Blochmannia floridanus

scientific article

Analysis of the overdispersed clock in the short-term evolution of hepatitis C virus: Using the E1/E2 gene sequences to infer infection dates in a single source outbreak

scientific article published on 3 April 2006

Antibiotic use and microbiome function

scientific article

Assessing gut microbial diversity from feces and rectal mucosa

scientific article

Assessing the nucleotide diversity of three aphid species by RAPD

article

Assortative mating and fertility in two Drosophila subobscura strains with different mitochondrial DNA haplotypes.

scientific article published in November 2003

Author Correction: On the thermodynamic origin of metabolic scaling

scientific article published in Scientific Reports

Bacterial endosymbionts of insects: insights from comparative genomics

scientific article published in November 2004

Bayesian Hierarchical Compositional Models for Analysing Longitudinal Abundance Data from Microbiome Studies

scientific article published on 30 August 2022

Bioinformatic flowchart and database to investigate the origins and diversity of clan AA peptidases

scientific article published on 27 January 2009

Blattabacteria, the endosymbionts of cockroaches, have small genome sizes and high genome copy numbers.

scientific article published in December 2008

Blueprint for a minimal photoautotrophic cell: conserved and variable genes in Synechococcus elongatus PCC 7942.

scientific article

Bronchial microbiome of severe COPD patients colonised by Pseudomonas aeruginosa

scientific article

Bronchial microbiome, PA biofilm-forming capacity and exacerbation in severe COPD patients colonized by P. aeruginosa

scientific article

CROC: finding chromosomal clusters in eukaryotic genomes

scientific article

Carriage of Enterobacteria Producing Extended-Spectrum β-Lactamases and Composition of the Gut Microbiota in an Amerindian Community

scientific article published on 9 November 2015

Characterization and control of microbial black spot spoilage in dry-cured Iberian ham

Chromosomal stasis versus plasmid plasticity in aphid endosymbiont Buchnera aphidicola.

scientific article

Clonal interference and the evolution of RNA viruses.

scientific article published on September 1999

Clostridium difficile heterogeneously impacts intestinal community architecture but drives stable metabolome responses

scientific article

Coexistence of Wolbachia with Buchnera aphidicola and a secondary symbiont in the aphid Cinara cedri

scientific article

Colonization Resistance of the Gut Microbiota against Clostridium difficile

scientific article

Combined therapy of interferon plus ribavirin promotes multiple adaptive solutions in hepatitis C virus.

scientific article published on April 2009

Comparative Mitogenomics of Leeches (Annelida: Clitellata): Genome Conservation and Placobdella-Specific trnD Gene Duplication

scientific article

Comparative analysis of two genomic regions among four strains of Buchnera aphidicola, primary endosymbiont of aphids

scientific article

Comparative genomics of Blattabacterium cuenoti: the frozen legacy of an ancient endosymbiont genome

scientific article (publication date: 2013)

Comparative genomics of Serratia spp.: two paths towards endosymbiotic life.

scientific article

Comparative molecular evolution of primary (Buchnera) and secondary symbionts of aphids based on two protein-coding genes

scientific article published in August 2002

Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut.

scientific article published on 18 January 2014

Comparison of vaccine strains and the virus causing the 1986 foot-and-mouth disease outbreak in Spain: epizootiological analysis

scientific article published in January 1990

Complete genome sequence of "Candidatus Portiera aleyrodidarum" BT-QVLC, an obligate symbiont that supplies amino acids and carotenoids to Bemisia tabaci

scientific article published on December 2012

Complete genome sequence of "Candidatus Tremblaya princeps" strain PCVAL, an intriguing translational machine below the living-cell status

scientific article published on October 2011

Complete genome sequence of Acidaminococcus intestini RYC-MR95, a Gram-negative bacterium from the phylum Firmicutes.

scientific article

Contribution of insertions and deletions to the variability of hepatitis C virus populations.

scientific article published in August 2007

DNA barcodes reveal the presence of the introduced freshwater leech Helobdella europaea in Spain

scientific article

Daily follow-up of bacterial communities in the human gut reveals stable composition and host-specific patterns of interaction

scientific article published on 27 April 2012

Detecting Changes in the Functional Constraints of Paralogous Genes

article

Detection of mixed-strain infections by FACS and ultra-low input genome sequencing

article

Determination of the core of a minimal bacterial gene set

scientific article published in September 2004

Diet shapes the gut microbiota of the omnivorous cockroach Blattella germanica

scientific article published on 26 February 2015

Different mechanisms generating sequence variability are revealed in distinct regions of the hydroxyproline-rich glycoprotein gene from maize and related species

scientific article

Differential effects of antibiotic therapy on the structure and function of human gut microbiota

scientific article

Diminishing returns of population size in the rate of RNA virus adaptation

scientific article published on April 2000

Direct sequencing of human gut virome fractions obtained by flow cytometry

scientific article

Direct squencing from the minimal number of DNA molecules needed to fill a 454 picotiterplate

scientific article

ECA, a Python tool to study the evolution of life

scientific article published in May 2024

EVOLUTIONARY DYNAMICS OF FITNESS RECOVERY FROM THE DEBILITATING EFFECTS OF MULLER'S RATCHET.

scientific article

Early progress in aphid genomics and consequences for plant-aphid interactions studies

scientific article published on June 2008

Effect of Ribavirin on the Mutation Rate and Spectrum of Hepatitis C Virus In Vivo

scientific article (publication date: June 2009)

Effect of a Nutritional Intervention on the Intestinal Microbiota of Vertically HIV-Infected Children: The Pediabiota Study

scientific article published on 16 July 2020

Effect of antiviral treatment and host susceptibility on positive selection in hepatitis C virus (HCV).

scientific article published on 5 November 2007

Effect of daily intake of pomegranate juice on fecal microbiota and feces metabolites from healthy volunteers.

scientific article published on 29 July 2015

Effect of oligonucleotide primers in determining viral variability within hosts

scientific article

Effect of population patchiness and migration rates on the adaptation and divergence of vesicular stomatitis virus quasispecies populations.

scientific article published on August 1999

Effects of HIV, ART and prebiotics on the active fraction of the gut microbiota.

scientific article

Effects of Immunonutrition in Advanced HIV Disease: a Randomized Placebo Controlled Clinical Trial (Promaltia Study).

scientific article

Elevated circulating levels of succinate in human obesity are linked to specific gut microbiota.

scientific article published on 12 February 2018

Endosymbiotic bacteria: groEL buffers against deleterious mutations

scientific article (publication date: 23 May 2002)

Enhanced adaptation of vesicular stomatitis virus in cells infected with vaccinia virus

scientific article

EnvDB, a database for describing the environmental distribution of prokaryotic taxa.

scientific article published on 29 April 2009

Environmental distribution of prokaryotic taxa

scientific article

Epidemic dynamics of two coexisting hepatitis C virus subtypes

scientific article published in January 2007

Epistasis and the adaptability of an RNA virus

scientific article published on 6 May 2005

Estimating the extent of horizontal gene transfer in metagenomic sequences

scientific article

Evaluating the fidelity of de novo short read metagenomic assembly using simulated data

scientific article

Evidence for Succession and Putative Metabolic Roles of Fungi and Bacteria in the Farming Mutualism of the Ambrosia Beetle Xyleborus affinis

scientific article published on 15 September 2020

Evidence of Recombination in Intrapatient Populations of Hepatitis C Virus

scientific article

Evidence of the Red-Queen Hypothesis from Accelerated Rates of Evolution of Genes Involved in Biotic Interactions in Pneumocystis.

scientific article

Evolution of Prokaryote-Animal Symbiosis from a Genomics Perspective

Evolution of RNA virus in spatially structured heterogeneous environments

scientific article published in May 2003

Evolution of mitochondrial DNA in Drosophila subobscura.

scientific article

Evolution of reduced prokaryotic genomes and the minimal cell concept: variations on a theme

scientific article

Evolution of small prokaryotic genomes

scientific article

Evolution of the leucine gene cluster in Buchnera aphidicola: insights from chromosomal versions of the cluster

scientific article (publication date: May 2004)

Evolution of the secondary symbiont "Candidatus serratia symbiotica" in aphid species of the subfamily lachninae

scientific article

Evolutionary analysis of genetic variation observed in citrus tristeza virus (CTV) after host passage.

scientific article

Evolutionary convergence and nitrogen metabolism in Blattabacterium strain Bge, primary endosymbiont of the cockroach Blattella germanica

scientific article

Evolutionary trajectories of beta-lactamase CTX-M-1 cluster enzymes: predicting antibiotic resistance

scientific article

Experimental Epidemiology of Antibiotic Resistance: Looking for an Appropriate Animal Model System

scientific article published in February 2018

Exploring the human microbiome from multiple perspectives: factors altering its composition and function.

scientific article published on 25 February 2017

Exponential increases of RNA virus fitness during large population transmissions

scientific article

Extreme genome reduction in Buchnera spp.: toward the minimal genome needed for symbiotic life

scientific article

FREQUENCY-DEPENDENT SELECTION IN A MAMMALIAN RNA VIRUS.

scientific article published in June 1997

Fertility and viability at the Sod locus in Drosophila melanogaster: non-additive and asymmetric selection

scientific article published on 01 June 1991

Filosofía, ciencia y biología sintética

Fitness and life-history traits of the two major mitochondrial DNA haplotypes of Drosophila subobscura

scientific article

Fixation of mutations at the VP1 gene of foot-and-mouth disease virus. Can quasispecies define a transient molecular clock?

scientific article published in July 1991

Following the very initial growth of biological RNA viral clones.

scientific article published on February 2005

Founder-effect speciation theory: failure of experimental corroboration

scientific article

Fragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity Calculations

scientific article

Frequency-dependent selection in human immunodeficiency virus type 1.

scientific article published in January 2002

From phylogenetics to phylogenomics: the evolutionary relationships of insect endosymbiotic gamma-Proteobacteria as a test case.

scientific article published in February 2007

Functional Metagenomics of the Bronchial Microbiome in COPD.

scientific article

Functional Redundancy-Induced Stability of Gut Microbiota Subjected to Disturbance

scientific article

Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity

scientific article

Functional microbiome deficits associated with ageing: Chronological age threshold

scientific article published on 15 November 2019

Gene expression levels influence amino acid usage and evolutionary rates in endosymbiotic bacteria

scientific article published in June 2005

Generalized Linear Model (GLM) framework for the association of host variables and viral strains with liver fibrosis in HCV/HIV coinfected patients.

scientific article published on 19 November 2012

Genetic Variability of Hepatitis C Virus before and after Combined Therapy of Interferon plus Ribavirin

scientific article (publication date: 26 August 2008)

Genetic characterization of influenza viruses from influenza-related hospital admissions in the St. Petersburg and Valencia sites of the Global Influenza Hospital Surveillance Network during the 2013/14 influenza season

scientific article

Genetic differentiation in the striped dolphin Stenella coeruleoalba from European waters according to mitochondrial DNA (mtDNA) restriction analysis

scientific article published on 01 June 1999

Genetic diversity of Iberian populations of Bemisia tabaci (Hemiptera: Aleyrodidae) based on random amplified polymorphic DNA-polymerase chain reaction

scientific article published in April 2001

Genetic lesions associated with Muller's ratchet in an RNA virus.

scientific article published on November 1996

Genetic similarity of hepatitis C virus and fibrosis progression in chronic and recurrent infection after liver transplantation.

scientific article published in February 2006

Genetic variability in hepatitis C virus and its role in antiviral treatment response.

scientific article published in March 2008

Genome Sequence of Lactobacillus plantarum 19L3, a Strain Proposed as a Starter Culture for Slovenska Bryndza Ovine Cheese.

scientific article published on 24 April 2014

Genome degeneration and adaptation in a nascent stage of symbiosis

scientific article

Genome economization in the endosymbiont of the wood roach Cryptocercus punctulatus due to drastic loss of amino acid synthesis capabilities

scientific article published on 16 November 2011

Genome evolution in the primary endosymbiont of whiteflies sheds light on their divergence

scientific article published on 25 February 2015

Genome rearrangement distances and gene order phylogeny in gamma-Proteobacteria

scientific article published on 16 March 2005

Genome reduction and potential metabolic complementation of the dual endosymbionts in the whitefly Bemisia tabaci

scientific article published on 21 March 2015

Genome sequence of Lactococcus garvieae UNIUD074, isolated in Italy from a lactococcosis outbreak.

scientific article published on 20 May 2011

Genome size reduction through multiple events of gene disintegration in Buchnera APS.

scientific article published in November 2001

Genomic Signature in Evolutionary Biology: A Review

scientific article published on 16 February 2023

Genomic determinants of protein folding thermodynamics in prokaryotic organisms

scientific article published in November 2004

Genomics of intracellular symbionts in insects.

scientific article published on 25 January 2010

Geographic distribution and seasonal variation of mitochondrial DNA haplotypes in the aphid Rhopalosiphum padi (Hemiptera: Aphididae)

Goethe's dream. Challenges and opportunities for synthetic biology

scientific article published in August 2009

GroEL and the maintenance of bacterial endosymbiosis

scientific article published in September 2004

Gut Bacteria Metabolism Impacts Immune Recovery in HIV-infected Individuals

scientific article

Gut Microbiota Is Not Essential for Survival and Development in Blattella germanica, but Affects Uric Acid Storage

scientific article published on 21 January 2024

Gut microbiota disturbance during antibiotic therapy: a multi-omic approach

scientific article

Gut microbiota disturbance during antibiotic therapy: a multi-omic approach

Gut microbiota in children vaccinated with rotavirus vaccine

scientific article

GyDB mobilomics: LTR retroelements and integrase-related transposons of the pea aphid Acyrthosiphon pisum genome.

scientific article

HD 172189, a Cluster Member Binary System with a δ Scuti Component in the Field of View of COROT

HD 173977: An ellipsoidal δ Scuti star variable

scientific article published in Astronomy and Astrophysics

HIV infection results in metabolic alterations in the gut microbiota different from those induced by other diseases

scientific article

HIV, HPV, and microbiota: partners in crime?

scientific article

Harassment charges: Injustice done?:

scientific article published in Science

Health and Disease Imprinted in the Time Variability of the Human Microbiome

scientific article

Hepatitis C virus and the controversial role of the interferon sensitivity determining region in the response to interferon treatment.

scientific article published in February 2008

High diversity of the viral community from an Antarctic lake

scientific article

High genetic stability in natural populations of the plant RNA virus tobacco mild green mosaic virus

article

How does Tremblaya princeps get essential proteins from its nested partner Moranella endobia in the Mealybug Planoccocus citri?

scientific article

Hybrid sequencing approach applied to human fecal metagenomic clone libraries revealed clones with potential biotechnological applications

scientific article

Identification of Xenologs and Their Characteristic Low Expression Levels in the Cyanobacterium Synechococcus elongatus.

scientific article published on 4 June 2015

Identification of a gene overexpressed in aphids reared under short photoperiod

scientific article published in March 2003

Identification of the weevil immune genes and their expression in the bacteriome tissue

scientific article

Immunity and other defenses in pea aphids, Acyrthosiphon pisum ⬇️

scientific article published on 23 February 2010

Impact of Rearing Conditions on the Ambrosia Beetle's Microbiome

scientific article published on 13 December 2018

Impact of probiotic Saccharomyces boulardii on the gut microbiome composition in HIV-treated patients: A double-blind, randomised, placebo-controlled trial

scientific article

Instability of the faecal microbiota in diarrhoea-predominant irritable bowel syndrome

scientific article

Intelligibility in microbial complex systems: Wittgenstein and the score of life

scientific article

Interplay between gut microbiota metabolism and inflammation in HIV infection

article

Intra- and intergenotypic competition in Drosophila melanogaster: effects of density on larval survival and rate of development

article

Irradiation-resistance conferred by superoxide dismutase: possible adaptive role of a natural polymorphism in Drosophila melanogaster

scientific article published on February 1986

Is group selection a factor modulating the virulence of RNA viruses?

scientific article published on 01 June 1997

Is the Quasispecies Concept Relevant to RNA Viruses? ⬇️

scientific article published on January 1, 2002

Isolation in small populations of Wayampi Amerindians promotes endemicity and homogenization of their faecal virome, but its distribution is not entirely random

scientific article published on 20 December 2017

JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes

scientific article

Larval Competition in Drosophila melanogaster: The Model of the Bands of Density

article

Larval competition in Drosophila melanogaster: effects on development time

scientific article published in January 1990

Larval competition in Drosophila melanogaster: frequency-dependence of viability

article

Larval stop, delayed development and survival in overcrowded cultures of Drosophila melanogaster: Effect of urea and uric acid

article

Learning how to live together: genomic insights into prokaryote-animal symbioses

scientific article published on March 2008

Legionella pneumophila pangenome reveals strain-specific virulence factors.

scientific article

Lessons in Evolution from Genome Reduction in Endosymbionts

Linkage disequilibria between mtDNA haplotypes and chromosomal arrangements in a natural population of Drosophila subobscura

scientific article

Live genomics for pathogen monitoring in public health.

scientific article published on 21 January 2014

Mealybugs nested endosymbiosis: going into the 'matryoshka' system in Planococcus citri in depth

scientific article

Meconium microbiota types dominated by lactic acid or enteric bacteria are differentially associated with maternal eczema and respiratory problems in infants

scientific article

Metabolic networks of Sodalis glossinidius: a systems biology approach to reductive evolution

scientific article

Metabolic stasis in an ancient symbiosis: genome-scale metabolic networks from two Blattabacterium cuenoti strains, primary endosymbionts of cockroaches

scientific article (publication date: 18 January 2012)

Metagenomic Analysis of Crohn's Disease Patients Identifies Changes in the Virome and Microbiome Related to Disease Status and Therapy, and Detects Potential Interactions and Biomarkers

scientific article published on 6 August 2015

Metagenomics of human microbiome: beyond 16s rDNA.

scientific article

Metagenomics reveals our incomplete knowledge of global diversity

scientific article published on 13 July 2008

Metatranscriptomic approach to analyze the functional human gut microbiota

scientific article

Microbial diversity in the midguts of field and lab-reared populations of the European corn borer Ostrinia nubilalis

scientific article (publication date: 2011)

Microbiome diversity in the bronchial tracts of patients with chronic obstructive pulmonary disease

scientific article

Microbiota of sliced cooked ham packaged in modified atmosphere throughout the shelf life

scientific article published on 20 September 2018

Minimal Genomes and Reducible Complexity

Mining metagenomic whole genome sequences revealed subdominant but constantLactobacilluspopulation in the human gut microbiota

Mining virulence genes using metagenomics

scientific article

Mitochondrial DNA Divergence Suggests That Podarcis hispanica atrata (Squamata: Lacertidae) from the Columbretes Islands Merits Specific Distinction

Mitochondrial DNA effects on fitness in Drosophila subobscura

scientific article

Mitochondrial DNA evolution in experimental populations of Drosophila subobscura

scientific article

Mitochondrial DNA variability in three Mediterranean populations of Aphanius iberus

Mitochondrial Dna Variation in Rhopalosiphum padi (Homoptera: Aphididae) Populations from four Spanish Localities

article

Mobile genetic element proliferation and gene inactivation impact over the genome structure and metabolic capabilities of Sodalis glossinidius, the secondary endosymbiont of tsetse flies

scientific article

Mode of selection and experimental evolution of antiviral drugs resistance in vesicular stomatitis virus

scientific article published in January 2005

Modular organization in the reductive evolution of protein-protein interaction networks

scientific article published in January 2007

Modulation of Saliva Microbiota through Prebiotic Intervention in HIV-Infected Individuals

scientific article published on 14 June 2019

Molecular characterization and cytonuclear disequilibria of two Drosophila subobscura mitochondrial haplotypes

scientific article published in October 1993

Molecular characterization of cyclic and obligate parthenogens in the aphid Rhopalosiphum padi (L.).

scientific article published in April 1996

Molecular diversity and evolutionary processes of Alternaria solani in Brazil inferred using genealogical and coalescent approaches

scientific article published on June 2009

Molecular epidemiology and evolution in an outbreak of fulminant hepatitis B virus.

scientific article published on April 2006

Molecular epidemiology and forensic genetics: application to a hepatitis C virus transmission event at a hemodialysis unit.

scientific article published on 8 January 2003

Molecular epidemiology of a hepatitis C virus outbreak in a hemodialysis unit

scientific article

Molecular evidence for ongoing complementarity and horizontal gene transfer in endosymbiotic systems of mealybugs

scientific article

Molecular evolution in court: analysis of a large hepatitis C virus outbreak from an evolving source ⬇️

scientific article published on July 19, 2013

Molecular systematics of aphids (Homoptera: Aphididae): new insights from the long-wavelength opsin gene

scientific article published in January 2004

Molecular systematics of aphids and their primary endosymbionts

scientific article published in September 2001

Multiple infection dynamics has pronounced effects on the fitness of RNA viruses

article

Mutational and selective pressures on codon and amino acid usage in Buchnera, endosymbiotic bacteria of aphids.

scientific article

Mutational events in cefotaximase extended-spectrum beta-lactamases of the CTX-M-1 cluster involved in ceftazidime resistance.

scientific article published on 28 April 2008

Natural populations of Trypanosoma cruzi, the agent of Chagas disease, have a complex multiclonal structure.

scientific article published on January 1986

Natural selection and the organ-specific differentiation of HIV-1 V3 hypervariable region

scientific article

Naturally-occurring hepatitis C virus protease variants: implications for resistance to new antivirals

Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

scientific article (publication date: 2 November 2009)

New Insights on the Evolutionary History of Aphids and Their Primary Endosymbiont Buchnera aphidicola

scientific article (publication date: 16 February 2011)

New clues about the evolutionary history of metabolic losses in bacterial endosymbionts, provided by the genome of Buchnera aphidicola from the aphid Cinara tujafilina

scientific article (publication date: July 2011)

No exception to the rule: Candidatus Portiera aleyrodidarum cell wall revisited

scientific article published on 19 September 2014

Non-adiabatic theoretical observables inδScuti stars

scientific article published in Astronomy and Astrophysics

Nucleotide diversity of a ND5 fragment confirms that population expansion is the most suitable explanation for the mtDNA haplotype polymorphism of Drosophila subobscura

scientific article published on 18 June 2010

Obsolescence and intervention: on synthetic-biological entities

scientific article published on 26 November 2014

On the thermodynamic origin of metabolic scaling.

scientific article published on 23 January 2018

On the transposon origins of mammalian SCAND3 and KRBA2, two zinc-finger genes carrying an integrase/transposase domain ⬇️

scientific article (publication date: September 2012)

Overcompensation as a mechanism for maintaining polymorphism: egg-to-adult viability in Drosophila

scientific article

Paving the way for synthetic biology‐based bioremediation in Europe ⬇️

scientific article published on December 29, 2009

Pear Blister Canker Viroid is a Member of the Apple Scar Skin Subgroup (apscaviroids) and also has Sequence Homology with Viroids from other Subgroups

article by C. Hernandez et al published 1 October 1992 in Journal of General Virology

Phylogenetic analysis of the isopenicillin-N-synthetase horizontal gene transfer

scientific article published in May 1996

Phylogenetic signal and functional categories in Proteobacteria genomes

scientific article

Phylogenomic Evidence for the Presence of a Flagellum and cbb3 Oxidase in the Free-Living Mitochondrial Ancestor

scientific article (publication date: 20 June 2011)

Phylogeny of viroids, viroidlike satellite RNAs, and the viroidlike domain of hepatitis delta virus RNA

scientific article

Plasmid conjugation from proteobacteria as evidence for the origin of xenologous genes in cyanobacteria.

scientific article published on 7 February 2014

Population dynamics of the 2 major mitochondrial DNA haplotypes in experimental populations of Drosophila subobscura.

scientific article published in December 2005

Postsymbiotic plasmid acquisition and evolution of the repA1-replicon in Buchnera aphidicola.

scientific article published on September 2000

Presence of Blastocystis in gut microbiota is associated with cognitive traits and decreased executive function

scientific article published in 2022

Protective effect of Bifidobacterium pseudocatenulatum CECT7765 against induced bacterial antigen translocation in experimental cirrhosis.

scientific article published on 24 November 2013

Putative evolutionary origin of plasmids carrying the genes involved in leucine biosynthesis in Buchnera aphidicola (endosymbiont of aphids).

scientific article

Ranking the impact of human health disorders on gut metabolism: systemic lupus erythematosus and obesity as study cases

scientific article

Rapid acclimation of juvenile corals to CO2 -mediated acidification by upregulation of heat shock protein and Bcl-2 genes.

scientific article

Rapid fitness losses in mammalian RNA virus clones due to Muller's ratchet

scientific article

Reductive genome evolution in Buchnera aphidicola

scientific article

Refined analysis of genetic variability parameters in hepatitis C virus and the ability to predict antiviral treatment response.

scientific article published on 4 May 2008

Relating the liver damage with hepatitis C virus polymorphism in core region and human variables in HIV-1-coinfected patients.

scientific article published on 21 August 2010

Relating the outcome of HCV infection and different host SNP polymorphisms in a Majorcan population coinfected with HCV-HIV and treated with pegIFN-RBV.

scientific article published on March 2014

Relationship between within-host fitness and virulence in the vesicular stomatitis virus: correlation with partial decoupling

scientific article

Repeated transfer of small RNA virus populations leading to balanced fitness with infrequent stochastic drift

scientific article published on October 1996

Repeated transfer of small RNA virus populations leading to balanced fitness with infrequent stochastic drift

Repetitive nucleotide sequencing of a dispensable DNA segment in a clonal population of African swine fever virus

scientific article published on August 1991

Reply to "chronic obstructive pulmonary disease lung microbiota diversity may be mediated by age or inhaled corticosteroid use".

scientific article published in March 2015

Retrospective case-control study of viral pathogen screening in proliferative verrucous leukoplakia lesions

scientific article published on October 2014

Rifampicin treatment of Blattella germanica evidences a fecal transmission route of their gut microbiota

scientific article published on 9 January 2018

Sampling and repeatability in the evaluation of hepatitis C virus genetic variability.

scientific article published in September 2003

Scanty microbes, the 'symbionelle' concept

scientific article published on 22 August 2013

Selection for robustness in mutagenized RNA viruses

scientific article

Selection on coding regions determined Hox7 genes evolution

scientific article published on 29 August 2003

Selective growth-inhibitory effect of 8-hydroxyquinoline towards Clostridium difficile and Bifidobacterium longum subsp. longum in co-culture analysed by flow cytometry.

scientific article

Sequence analysis of the polymerase domain of HIV-1 reverse transcriptase in naive and zidovudine-treated individuals reveals a higher polymorphism in alpha-helices as compared with beta-strands.

scientific article published in January 1999

Sequences of isopenicillin N synthetase genes suggest horizontal gene transfer from prokaryotes to eukaryotes

article

Serratia symbiotica from the aphid Cinara cedri: a missing link from facultative to obligate insect endosymbiont

scientific article

Severity-related changes of bronchial microbiome in chronic obstructive pulmonary disease.

scientific article

Sex versus parthenogenesis: a transcriptomic approach of photoperiod response in the model aphid Acyrthosiphon pisum (Hemiptera: Aphididae).

scientific article

Side-stepping secondary symbionts: widespread horizontal transfer across and beyond the Aphidoidea.

scientific article published in April 2003

Simbiosis y parasitismo

Simulating Multilevel Dynamics of Antimicrobial Resistance in a Membrane Computing Model

scientific article published on 29 January 2019

Small but powerful, the primary endosymbiont of moss bugs, Candidatus Evansia muelleri, holds a reduced genome with large biosynthetic capabilities

scientific article

Solving a Bloody Mess: B-Vitamin Independent Metabolic Convergence among Gammaproteobacterial Obligate Endosymbionts from Blood-Feeding Arthropods and the Leech Haementeria officinalis.

scientific article

Structural alterations of faecal and mucosa-associated bacterial communities in irritable bowel syndrome.

scientific article published in March 2012

Structural analyses of a hypothetical minimal metabolism

scientific article published on October 2007

Structural and functional changes in the gut microbiota associated to Clostridium difficile infection

scientific article published on 4 July 2014

Study of the viral and microbial communities associated with Crohn's disease: a metagenomic approach.

scientific article

Succession of the gut microbiota in the cockroach Blattella germanica

scientific article published on June 2014

SymbioGenomesDB: a database for the integration and access to knowledge on host-symbiont relationships.

scientific article

Symbionts and pathogens: what is the difference?

scientific article published on January 2013

Tempo and mode of early gene loss in endosymbiotic bacteria from insects

scientific article

Testing the Domino Theory of Gene Loss in : The Relevance of Epistatic Interactions

article

The Endobiota Study: Comparison of Vaginal, Cervical and Gut Microbiota Between Women with Stage 3/4 Endometriosis and Healthy Controls

scientific article published on 18 February 2019

The Evolutionary Origin of Xanthomonadales Genomes and the Nature of the Horizontal Gene Transfer Process

article

The Gut Metagenome Changes in Parallel to Waist Circumference, Brain Iron Deposition, and Cognitive Function

scientific article published on 7 June 2017

The Gut Microbiota Composition of the Moth Brithys crini Reflects Insect Metamorphosis

scientific article published on 03 December 2019

The Gypsy Database (GyDB) of mobile genetic elements

scientific article

The Metabolic Building Blocks of a Minimal Cell

scientific article published on 24 December 2020

The active human gut microbiota differs from the total microbiota

scientific article published on 28 July 2011

The analysis of the oral DNA virome reveals which viruses are widespread and rare among healthy young adults in Valencia (Spain).

scientific article published on 8 February 2018

The calculus of Life: Contingency vs. necessity

scientific article published in December 2022

The cockroach Blattella germanica obtains nitrogen from uric acid through a metabolic pathway shared with its bacterial endosymbiont.

scientific article published on July 2014

The contribution of epistasis to the architecture of fitness in an RNA virus

scholarly article

The cost of replication fidelity in an RNA virus

scientific article

The cost of replication fidelity in human immunodeficiency virus type 1.

scientific article

The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus

scientific article

The effect of co- and superinfection on the adaptive dynamics of vesicular stomatitis virus

scientific article published on 27 June 2006

The effects of prebiotics on microbial dysbiosis, butyrate production and immunity in HIV-infected subjects

scientific article published on 21 December 2016

The evolution of RNA viruses: A population genetics view

scientific article

The evolution of the heat-shock protein GroEL from Buchnera, the primary endosymbiont of aphids, is governed by positive selection

scientific article

The evolutionary history of Drosophila buzzatii. XXX. Mitochondrial DNA polymorphism in original and colonizing populations

scientific article published in February 1996

The evolutionary history of symbiotic associations among bacteria and their animal hosts: a model

scientific article published on January 2009

The frontier between cell and organelle: genome analysis of Candidatus Carsonella ruddii

scientific article

The genetic structure of Drosophila subobscura populations from the islands of Majorca and Minorca (Balearic Islands, Spain) based on allozymes and mitochondrial DNA

article

The genome of Cardinium cBtQ1 provides insights into genome reduction, symbiont motility, and its settlement in Bemisia tabaci

scientific article

The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes

scientific article

The genomic sequence of Exiguobacterium chiriqhucha str. N139 reveals a species that thrives in cold waters and extreme environmental conditions

scientific article published on 19 April 2017

The haplotype distribution of two genes of citrus tristeza virus is altered after host change or aphid transmission.

scientific article published in March 1999

The link between independent acquisition of intracellular gamma-endosymbionts and concerted evolution in Tremblaya princeps

scientific article published on 25 June 2015

The pea aphid phylome: a complete catalogue of evolutionary histories and arthropod orthology and paralogy relationships for Acyrthosiphon pisum genes

scientific article published in March 2010

The population genetics and evolutionary epidemiology of RNA viruses

scientific article published on April 2004

The red queen reigns in the kingdom of RNA viruses

scientific article

The respiratory microbiome in bronchial mucosa and secretions from severe IgE-mediated asthma patients

scientific article

The role of positive selection in hepatitis C virus

scientific article

The role of rotation on Petersen diagrams

scientific article published in Astronomy and Astrophysics

The striking case of tryptophan provision in the cedar aphid Cinara cedri.

scientific article published on 27 June 2008

The ten grand challenges of synthetic life

scientific article

Time Series Analysis of the Microbiota of Children Suffering From Acute Infectious Diarrhea and Their Recovery After Treatment.

scientific article

Time and rate of evolution are the key to establish transmission cases

article

To B or Not to B: Comparative Genomics Suggests as a Source of B Vitamins in Whiteflies

scientific article published on 25 September 2018

Toward minimal bacterial cells: evolution vs. design

scientific article published on 03 December 2008

Towards a microbial thermoelectric cell

scientific article

Transmission of hepatitis C virus by a cardiac surgeon.

scientific article published on February 1996

Tremblaya phenacola PPER: an evolutionary beta-gammaproteobacterium collage

scientific article

Two host clades, two bacterial arsenals: evolution through gene losses in facultative endosymbionts

scientific article

Unequal distribution of RT-PCR artifacts along the E1-E2 region of Hepatitis C virus

scientific article published on 11 June 2009

Unravelling the bacterial diversity found in the semi-arid Tablas de Daimiel National Park wetland (central Spain)

article

Using evolutionary tools to refine the new hypervariable region 3 within the envelope 2 protein of hepatitis C virus.

scientific article published on 25 October 2007

Validating viral quasispecies with digital organisms: a re-examination of the critical mutation rate

scientific article

Variation of haplotype distributions of two genomic regions of Citrus tristeza virus populations from eastern Spain

scientific article published in February 2003

Variations in two gene sequences of Citrus tristeza virus after host passage

scientific article published in April 2006

Virulence factor rtx in Legionella pneumophila, evidence suggesting it is a modular multifunctional protein

scientific article

Weighted fitness theory: an approach to symbiotic communities.

scientific article

What Symbionts Teach us about Modularity

scientific article

Whole-genome sequence of Stenotrophomonas maltophilia D457, a clinical isolate and a model strain.

scientific article published on July 2012

Why are the genomes of endosymbiotic bacteria so stable?

scientific article published in April 2003

Yeast cultures with UCP1 uncoupling activity as a heating device

article

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