List of works by Asaf Salamov

A comparative genomics study of 23 Aspergillus species from section Flavi

scientific article published on 27 February 2020

A parts list for fungal cellulosomes revealed by comparative genomics

scientific article published on 30 May 2017

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

scientific article

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

scientific article (publication date: 2011)

Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens

scientific article

Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris

scientific article

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

scientific article published on 20 March 2012

Comparative genomics of biotechnologically important yeasts

scientific article

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88 ⬇️

scientific article

Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum

scientific article

Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize

scientific article

Comparative genomics of xylose-fermenting fungi for enhanced biofuel production

scientific article

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

scientific article

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

scientific article

Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry

scientific article published on 22 December 2015

Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi

scientific article published on 6 December 2012

Erratum: Corrigendum: Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

scholarly article published in Nature Biotechnology

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.

scientific article published on 16 January 2017

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication

scientific article

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

scientific article

Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis

scientific article

Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives

scientific article published on 27 June 2013

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

scientific article published on 8 October 2012

Genome sequence of the chestnut blight fungus Cryphonectria parasitica EP155: A fundamental resource for an archetypical invasive plant pathogen

scientific article published on 24 March 2020

Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis

scientific article

Genome sequence of the model mushroom Schizophyllum commune

scientific article

Genome sequences of two Phytophthora species responsible for Sudden Oak Death and Soybean Root Rot provide novel insights into their evolutionary origins and mechanisms of pathogenesis

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

scientific article

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion

scholarly article

Genomic adaptations of the halophilic Dead Sea filamentous fungus Eurotium rubrum

scientific article published on 9 May 2014

Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri

scientific article

Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes

scientific article published on 01 February 2021

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen

scientific article published on 28 March 2012

Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri

article

Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species ⬇️

scientific article published on 9 January 2018

Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts.

scientific article published on 9 April 2018

Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans

scientific article published on 28 April 2022

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

scientific article

Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics

scientific article

Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

scientific article

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

scientific article

The Chlamydomonas genome reveals the evolution of key animal and plant functions

scientific article

The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex

scientific article

The DNA sequence and biology of human chromosome 19

scientific article

The DNA sequence and comparative analysis of human chromosome 5

scientific article

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

scientific article

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

scientific article

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

scientific article

The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

scientific article

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

scientific article

The Sorghum bicolor genome and the diversification of grasses

scientific article

The Trichoplax genome and the nature of placozoans

scientific article

The amphioxus genome and the evolution of the chordate karyotype

scientific article

The ecoresponsive genome of Daphnia pulex

scientific article

The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion

scientific article

The genome of the Western clawed frog Xenopus tropicalis

scientific article

The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

scientific article

The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation

scientific article

The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry

scientific article

The sequence and analysis of duplication-rich human chromosome 16

scientific article

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

scientific article

Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication

scientific article published in Scientific Reports

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

scientific article

Widespread adenine N6-methylation of active genes in fungi.

scientific article

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