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List of works by Tanja Woyke

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Insights into the phylogeny and coding potential of microbial dark matter

scientific article
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

scientific article (publication date: 28 January 2011)
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products

scientific article
IMG 4 version of the integrated microbial genomes comparative analysis system

scientific article
Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma

scientific article
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing

scientific article
Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.

scientific article
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

scientific article
Symbiosis insights through metagenomic analysis of a microbial consortium

scientific article
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

scientific article
Assembling the marine metagenome, one cell at a time

scientific article
Gene expression profile of glioblastoma multiforme invasive phenotype points to new therapeutic targets

scientific article published in January 2005
Primer and platform effects on 16S rRNA tag sequencing

scientific article published on 4 August 2015
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

scientific article published on 25 June 2013
Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.

scientific article published on 2 October 2017
Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

scientific article published on 15 October 2015
The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes

scientific article
Viral dark matter and virus-host interactions resolved from publicly available microbial genomes

scientific article published on 22 July 2015
UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota

scientific article
One bacterial cell, one complete genome

scientific article
Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton

scientific article
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes

scientific article published on 01 January 2019
The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation

scientific article
Complete genome sequence of DSM 30083(T), the type strain (U5/41(T)) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy

scientific article published in 2014
Decontamination of MDA reagents for single cell whole genome amplification

scientific article
Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics

scientific article
Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

scientific article published in August 2014
Giant viruses with an expanded complement of translation system components

scientific article (publication date: 6 April 2017)
Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor

scientific article published on 23 January 2015
Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton

scientific article
Genomic sequencing of single microbial cells from environmental samples

scientific article
Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics

scientific article published on 29 August 2014
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scientific article published on 12 June 2017
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.

scientific article published on 19 March 2018
Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics

scientific article published on 12 September 2013
Comparative genomics suggests an independent origin of cytoplasmic incompatibility in Cardinium hertigii

scientific article
Metagenomics uncovers gaps in amplicon-based detection of microbial diversity

scientific article published in February 2016
Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities

scientific article (publication date: June 2013)
High-resolution phylogenetic microbial community profiling

scientific article published on 9 February 2016
Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project

scientific article
Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton

scientific article
Genomic features of bacterial adaptation to plants.

scientific article published on 18 December 2017
Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage

scientific article
High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake

scientific article published on 30 September 2013
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads

Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges

scientific article (publication date: December 2013)
Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics

scientific article published on 19 June 2015
Stop codon reassignments in the wild

scientific article
Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti

scientific article
Genome sequence of the obligate methanotroph Methylosinus trichosporium strain OB3b

scientific article

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