List of works - Soichi Wakatsuki

A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1

scientific article

Crystal structure of cyclic Lys48-linked tetraubiquitin

scientific article

Crystal structures of the CERT START domain with inhibitors provide insights into the mechanism of ceramide transfer

scientific article

Crystallization and X-ray diffraction analysis of N-terminally truncated human ALG-2

scientific article

Crystallization of small proteins assisted by green fluorescent protein

scientific article

Design of disulfide-linked thioredoxin dimers and multimers through analysis of crystal contacts

scientific article

Direct metal recognition by guanine nucleotide-exchange factor in the initial step of the exchange reaction

scientific article

Elucidation of Rab27 recruitment by its effectors: structure of Rab27a bound to Exophilin4/Slp2-a

scientific article

Intracellular phosphatidylserine is essential for retrograde membrane traffic through endosomes

scientific article

Mechanism Underlying I B Kinase Activation Mediated by the Linear Ubiquitin Chain Assembly Complex

scientific article

Molecular basis for autoregulatory interaction between GAE domain and hinge region of GGA1

scientific article

Molecular basis for defect in Alix-binding by alternatively spliced isoform of ALG-2 (ALG-2DeltaGF122) and structural roles of F122 in target recognition

scientific article

Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B

scientific article

S-SAD phasing study of death receptor 6 and its solution conformation revealed by SAXS

scientific article

Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation

scientific article

Structural analysis of the human galectin-9 N-terminal carbohydrate recognition domain reveals unexpected properties that differ from the mouse orthologue

scientific article

Structural analysis of the recognition mechanism of poly-N-acetyllactosamine by the human galectin-9 N-terminal carbohydrate recognition domain

scientific article

Structural basis for Ca2+ -dependent formation of ALG-2/Alix peptide complex: Ca2+/EF3-driven arginine switch mechanism

scientific article

Structural basis for Rab11-dependent membrane recruitment of a family of Rab11-interacting protein 3 (FIP3)/Arfophilin-1

scientific article

Structural basis for membrane binding specificity of the Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-2 determined by Arl1 GTPase

scientific article

Structural basis for phosphorylation-triggered autophagic clearance of Salmonella

scientific article

Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36

scientific article

Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide

scientific article

Structural basis for the accessory protein recruitment by the gamma-adaptin ear domain

scientific article

Structural basis for the cooperative interplay between the two causative gene products of combined factor V and factor VIII deficiency

scientific article

Structural basis for transcription inhibition by tagetitoxin

scientific article

Structural basis for tropomyosin overlap in thin (actin) filaments and the generation of a molecular swivel by troponin-T

scientific article

Structural basis of preferential binding of fucose-containing saccharide by the Caenorhabditis elegans galectin LEC-6

scientific article

Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism

scientific article

Structural basis of the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase from Bifidobacterium bifidum

scientific article

Structural basis of the strict phospholipid binding specificity of the pleckstrin homology domain of human evectin-2

scientific article

Structural switching of Cu,Zn-superoxide dismutases at loop VI: insights from the crystal structure of 2-mercaptoethanol-modified enzyme

scientific article

Structure of a compact conformation of linear diubiquitin

scientific article

Structure of the small GTPase Rab27b shows an unexpected swapped dimer

scientific article

Structures of an ATP-independent Lon-like protease and its complexes with covalent inhibitors

scientific article

Tuning mechanism-based inactivators of neuraminidases: mechanistic and structural insights

scientific article

List of works by Soichi Wakatsuki

A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1

Crystal structure of cyclic Lys48-linked tetraubiquitin

Crystal structures of the CERT START domain with inhibitors provide insights into the mechanism of ceramide transfer

Crystallization and X-ray diffraction analysis of N-terminally truncated human ALG-2

Crystallization of small proteins assisted by green fluorescent protein

Design of disulfide-linked thioredoxin dimers and multimers through analysis of crystal contacts

Direct metal recognition by guanine nucleotide-exchange factor in the initial step of the exchange reaction

Elucidation of Rab27 recruitment by its effectors: structure of Rab27a bound to Exophilin4/Slp2-a

Intracellular phosphatidylserine is essential for retrograde membrane traffic through endosomes

Mechanism Underlying I B Kinase Activation Mediated by the Linear Ubiquitin Chain Assembly Complex

Molecular basis for autoregulatory interaction between GAE domain and hinge region of GGA1

Molecular basis for defect in Alix-binding by alternatively spliced isoform of ALG-2 (ALG-2DeltaGF122) and structural roles of F122 in target recognition

Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B

S-SAD phasing study of death receptor 6 and its solution conformation revealed by SAXS

Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation

Structural analysis of the human galectin-9 N-terminal carbohydrate recognition domain reveals unexpected properties that differ from the mouse orthologue

Structural analysis of the recognition mechanism of poly-N-acetyllactosamine by the human galectin-9 N-terminal carbohydrate recognition domain

Structural basis for Ca2+ -dependent formation of ALG-2/Alix peptide complex: Ca2+/EF3-driven arginine switch mechanism

Structural basis for Rab11-dependent membrane recruitment of a family of Rab11-interacting protein 3 (FIP3)/Arfophilin-1

Structural basis for membrane binding specificity of the Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-2 determined by Arl1 GTPase

Structural basis for phosphorylation-triggered autophagic clearance of Salmonella

Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36

Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide

Structural basis for the accessory protein recruitment by the gamma-adaptin ear domain

Structural basis for the cooperative interplay between the two causative gene products of combined factor V and factor VIII deficiency

Structural basis for transcription inhibition by tagetitoxin

Structural basis for tropomyosin overlap in thin (actin) filaments and the generation of a molecular swivel by troponin-T

Structural basis of preferential binding of fucose-containing saccharide by the Caenorhabditis elegans galectin LEC-6

Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism

Structural basis of the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase from Bifidobacterium bifidum

Structural basis of the strict phospholipid binding specificity of the pleckstrin homology domain of human evectin-2

Structural switching of Cu,Zn-superoxide dismutases at loop VI: insights from the crystal structure of 2-mercaptoethanol-modified enzyme

Structure of a compact conformation of linear diubiquitin

Structure of the small GTPase Rab27b shows an unexpected swapped dimer

Structures of an ATP-independent Lon-like protease and its complexes with covalent inhibitors

Tuning mechanism-based inactivators of neuraminidases: mechanistic and structural insights