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Authors whose works are in public domain in at least one jurisdiction

List of works by Alla Lapidus

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A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

scientific article
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products

scientific article
Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis

scientific article
The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode

scientific article
Patterns and implications of gene gain and loss in the evolution of Prochlorococcus

scientific article published in December 2007
The genomic basis of trophic strategy in marine bacteria

scholarly article
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

scientific article published on 29 April 2007
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

scientific article
Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000

scientific article
Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus

scientific article
Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography

scientific article (publication date: 2007)
A bioinformatician's guide to metagenomics

scientific article
Environmental genomics reveals a single-species ecosystem deep within Earth

scientific article
A korarchaeal genome reveals insights into the evolution of the Archaea

scientific article
Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species

scientific article
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

scientific article published on 8 October 2012
Methylotrophy in Methylobacterium extorquens AM1 from a genomic point of view

scientific article
Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis

scientific article published on 28 August 2009
plasmidSPAdes: assembling plasmids from whole genome sequencing data

scientific article
One bacterial cell, one complete genome

scientific article
Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria

scientific article published on 28 May 2009
The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments

scientific article (publication date: 5 May 2010)
The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri

scientific article
Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks

scientific article
Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts

scientific article
The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation

scientific article
Complete genome sequence of Kytococcus sedentarius type strain (541).

scientific article
Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides

scientific article
The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry

scientific article
The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2

scientific article
Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

scientific article published in August 2014
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

scientific article
Comparative genomics of biotechnologically important yeasts

scientific article
The Methanosarcina barkeri Genome: Comparative Analysis with Methanosarcina acetivorans and Methanosarcina mazei Reveals Extensive Rearrangement within Methanosarcinal Genomes

scientific article
The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation

scientific article
Expression of a stress- and starvation-induced dps/pexB-homologous gene is controlled by the alternative sigma factor sigmaB in Bacillus subtilis

scientific article published on December 1, 1997
Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX

scientific article published on 5 January 2007
The enigmatic planctomycetes may hold a key to the origins of methanogenesis and methylotrophy

scientific article
Comparative genomics of xylose-fermenting fungi for enhanced biofuel production

scientific article
Genome erosion in a nitrogen-fixing vertically transmitted endosymbiotic multicellular cyanobacterium

scientific article (publication date: 8 July 2010)
A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans

scientific article
Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation

scientific article
Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations

scientific article (publication date: June 2009)
The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens

scientific article
Genome of Methylobacillus flagellatus, molecular basis for obligate methylotrophy, and polyphyletic origin of methylotrophy

scientific article published on 6 April 2007
Whole-genome shotgun optical mapping of Rhodospirillum rubrum

scientific article
The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction

scientific article
Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti

scientific article
Characterization of cyanobacterial hydrocarbon composition and distribution of biosynthetic pathways

scientific article (publication date: 2014)
Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma

scientific article

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