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List of works by Nathaniel Echols

A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution.

scientific article published in February 2002

Accessing protein conformational ensembles using room-temperature X-ray crystallography

scientific article

Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers

scientific article

Allosteric Activation Mechanism of the Mycobacterium tuberculosis Receptor Ser/Thr Protein Kinase, PknB ⬇️

scientific article published on December 8, 2010

Allosteric activation by dimerization of the PknD receptor Ser/Thr protein kinase from Mycobacterium tuberculosis

scientific journal article

An atypical receiver domain controls the dynamic polar localization of the Myxococcus xanthus social motility protein FrzS

scientific article

An integrated approach for finding overlooked genes in yeast

scientific article published in January 2002

Automated electron-density sampling reveals widespread conformational polymorphism in proteins

scientific article

Automated identification of elemental ions in macromolecular crystal structures

scientific article published on 20 March 2014

Automating crystallographic structure solution and refinement of protein-ligand complexes.

scientific article published on 25 December 2013

Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes

scientific article

EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy.

scientific article

Energy-dispersive X-ray emission spectroscopy using an X-ray free-electron laser in a shot-by-shot mode

scientific article

Erratum: Corrigendum: Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers

scholarly article published in Nature Methods

Exploring subdomain cooperativity in T4 lysozyme I: Structural and energetic studies of a circular permutant and protein fragment

scientific article

Exploring the range of protein flexibility, from a structural proteomics perspective

scientific article

ExpressYourself: A modular platform for processing and visualizing microarray data

scientific article

Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement

scientific article

Graphical tools for macromolecular crystallography in PHENIX

scientific article

Improved crystal orientation and physical properties from single-shot XFEL stills

scientific article

Improved low-resolution crystallographic refinement with Phenix and Rosetta

scientific article

Indexing amyloid peptide diffraction from serial femtosecond crystallography: new algorithms for sparse patterns

scientific article

Interactive comparison and remediation of collections of macromolecular structures.

scientific article published on 13 September 2017

Ligand placement based on prior structures: the guided ligand-replacement method

scientific article published on 25 December 2013

Macro-to-Micro Structural Proteomics: Native Source Proteins for High-Throughput Crystallization ⬇️

scientific article published on February 29, 2012

Macromolecular X-ray structure determination using weak, single-wavelength anomalous data

scientific article

Mining the structural genomics pipeline: identification of protein properties that affect high-throughput experimental analysis

scientific article published in February 2004

MolMovDB: analysis and visualization of conformational change and structural flexibility

scientific article

Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22

scientific article

Nanoflow electrospinning serial femtosecond crystallography

scientific article

New Python-based methods for data processing

scientific article

No observable conformational changes in PSII.

scientific article published on 18 May 2016

Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic

scientific article (publication date: September 2002)

Normal modes for predicting protein motions: a comprehensive database assessment and associated Web tool

scientific article

PHENIX: a comprehensive Python-based system for macromolecular structure solution

scientific article

Phaser.MRage: automated molecular replacement

scientific article (publication date: November 2013)

RNA Structure Refinement Using the ERRASER-Phenix Pipeline

scientific article published on January 2016

Room temperature femtosecond X-ray diffraction of photosystem II microcrystals

scientific article

SNPs on human chromosomes 21 and 22 -- analysis in terms of protein features and pseudogenes

scientific article published on 01 May 2002

SPINE 2: a system for collaborative structural proteomics within a federated database framework

scientific article

Simultaneous Femtosecond X-ray Spectroscopy and Diffraction of Photosystem II at Room Temperature

scientific article

Structural and Biophysical Characterization of the Mycobacterium tuberculosis Protein Rv0577, a Protein Associated with Neutral Red Staining of Virulent Tuberculosis Strains and Homologue of the Streptomyces coelicolor Protein KbpA.

scientific article published on 10 July 2017

Structure/function studies of Ser/Thr and Tyr protein phosphorylation in Mycobacterium tuberculosis

scientific article

Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy.

scientific article

The Database of Macromolecular Motions: new features added at the decade mark

scientific article

The Phenix software for automated determination of macromolecular structures

scientific article (publication date: September 2011)

The protein target list of the Northeast Structural Genomics Consortium

scientific article published in August 2004

Towards automated crystallographic structure refinement with phenix.refine

scientific article (publication date: April 2012)

Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution

scientific article published on 16 March 2012

Using support vector machines to improve elemental ion identification in macromolecular crystal structures

scientific article published on 25 April 2015

dxtbx: the diffraction experiment toolbox.

scientific article

phenix.mr_rosetta: molecular replacement and model rebuilding with Phenix and Rosetta

scientific article

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