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List of works by Steven Henikoff

A comprehensive map of insulator elements for the Drosophila genome

scientific article

A native chromatin purification system for epigenomic profiling in Caenorhabditis elegans

scientific article

A simple method for gene expression and chromatin profiling of individual cell types within a tissue

scientific article

A unified phylogeny-based nomenclature for histone variants

scientific article

A unique chromatin complex occupies young α-satellite arrays of human centromeres

scientific article published on February 2015

Adaptive evolution of centromere proteins in plants and animals

scientific article

An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites

scientific article published on 12 January 2017

Assembly of variant histones into chromatin

scientific article

Automated CUT&Tag profiling of chromatin heterogeneity in mixed-lineage leukemia

scientific article published on 18 October 2021

Automated band mapping in electrophoretic gel images using background information

scientific article

Automated in situ chromatin profiling efficiently resolves cell types and gene regulatory programs

article

Biparental contributions of the H2A.B histone variant control embryonic development in mice

scientific article published on 23 December 2020

CENP-A octamers do not confer a reduction in nucleosome height by AFM.

scientific article published in January 2014

CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design

scientific article

CUT&Tag for efficient epigenomic profiling of small samples and single cells

scientific article published on 29 April 2019

Capitalizing on disaster: Establishing chromatin specificity behind the replication fork

scientific article

Capturing the dynamic epigenome ⬇️

scientific article published on 08 October 2010

Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling.

scientific article published on 4 January 2012

Centromeres convert but don't cross

scientific article

Centromeric localization and adaptive evolution of an Arabidopsis histone H3 variant

scientific article

Changes in Chromosomal Localization of Heterochromatin-binding Proteins during the Cell Cycle in Drosophila ⬇️

scientific article published on March 23, 1998

Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis

scientific article

Chromatin Bottlenecks in Cancer

scientific article published on 26 February 2019

Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis

scientific article published in 2005

Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres

scientific article

Chromatin roadblocks to reprogramming 50 years on.

scientific article

Chromatin-based transcriptional punctuation

scientific article published in May 2009

Chromatin: packaging without nucleosomes

scientific article

Comparative methods for identifying functional domains in protein sequences

scientific article published on January 1, 1995

Conspiracy of silence among repeated transgenes ⬇️

scientific article published on July 1, 1998

DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes

scientific article published in January 2005

Discovery of chemically induced mutations in rice by TILLING.

scientific article

Discovery of induced point mutations in maize genes by TILLING

scientific article

Distinct HP1 and Su(var)3-9 complexes bind to sets of developmentally coexpressed genes depending on chromosomal location

scientific article

Doxorubicin, DNA torsion, and chromatin dynamics

scientific article

Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation

scientific article published on 16 November 2020

Efficient discovery of DNA polymorphisms in natural populations by Ecotilling.

scientific article

Efficient low-cost chromatin profiling with CUT&Tag

scientific article published on 10 September 2020

Environmental responses mediated by histone variants

scientific article

Epigenetic consequences of nucleosome dynamics

scientific article

Epigenome characterization at single base-pair resolution.

scientific article

Epigenomic analysis of formalin-fixed paraffin-embedded samples by CUT&Tag

scientific article published on 22 September 2023

EvoChromo: towards a synthesis of chromatin biology and evolution

scientific article published on 26 September 2019

Evolution: Heterochromatin Diversity in Early-Branching Land Plants

scientific article published on 01 February 2020

Exploring and explaining epigenetic effects ⬇️

scientific article published on August 1, 1997

Fly-TILL: reverse genetics using a living point mutation resource

scientific article

Genome-scale profiling of histone H3.3 replacement patterns

scientific article published on 11 September 2005

Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones

scientific article published on May 2010

Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3

scientific article published on 01 January 2002

Genome-wide profiling of salt fractions maps physical properties of chromatin

scientific article published on 16 December 2008

Genomic analysis of parent-of-origin allelic expression in Arabidopsis thaliana seeds

scientific article

Getting more from your sequences using the web ⬇️

scientific article published on 01 March 1998

Global and context-specific transcriptional consequences of oncogenic Fbw7 mutations

scientific article published on 28 February 2022

H2A.Z nucleosomes enriched over active genes are homotypic

scientific article

High-resolution mapping defines the cooperative architecture of Polycomb response elements

scientific article published on 25 March 2014

High-resolution mapping of transcription factor binding sites on native chromatin

scientific article published on 15 December 2013

High-throughput TILLING for Arabidopsis.

scientific article

High-throughput TILLING for functional genomics.

scientific article published in January 2003

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

scientific article

Histone H3 variants specify modes of chromatin assembly

scientific article

Histone H3.3 is enriched in covalent modifications associated with active chromatin

scientific article published on 19 January 2004

Histone H3.3 variant dynamics in the germline of Caenorhabditis elegans

scientific article

Histone deposition pathways determine the chromatin landscapes of H3.1 and H3.3 K27M oncohistones

scientific article published on 09 September 2020

Histone modification: cause or cog? ⬇️

scientific article published on July 20, 2011

Histone modifications: combinatorial complexity or cumulative simplicity?

scientific article

Histone replacement marks the boundaries of cis-regulatory domains

scientific article published on March 2007

Histone variants and epigenetics

scientific article

Histone variants and modifications in plant gene regulation ⬇️

scientific article published on December 13, 2010

Histone variants in pluripotency and disease

scientific article

Histone variants on the move: substrates for chromatin dynamics

scientific article published on 7 December 2016

Histone variants, nucleosome assembly and epigenetic inheritance

scientific article published in July 2004

Histone variants--ancient wrap artists of the epigenome

scientific article

Histone variants: dynamic punctuation in transcription

scientific article

Holocentromeres are dispersed point centromeres localized at transcription factor hotspots

scientific article

ISWI and CHD chromatin remodelers bind promoters but act in gene bodies

scientific article

Improved CUT&RUN chromatin profiling tools

scientific article published on 24 June 2019

Inner Kinetochore Protein Interactions with Regional Centromeres of Fission Yeast

scientific article

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

scientific article

Intergenic locations of rice centromeric chromatin

scientific article

Large-scale Chromosomal Movements During Interphase Progression in Drosophila ⬇️

scientific article published on October 5, 1998

Large-scale discovery of induced point mutations with high-throughput TILLING.

scientific article

Maintenance of chromatin states: an open-and-shut case

scientific article

Maize centromeres: organization and functional adaptation in the genetic background of oat

scientific article published on 18 February 2004

Mapping regulatory factors by immunoprecipitation from native chromatin

scientific article published on April 2015

Measuring genome-wide nucleosome turnover using CATCH-IT.

scientific article

Mismatch cleavage by single-strand specific nucleases

scientific article

No strand left behind

scientific article published on 01 September 2018

Nucleosomes remember where they were

scientific article published on 11 September 2019

Old cogs, new tricks: the evolution of gene expression in a chromatin context

scientific article published on 01 May 2019

Orientation of repeating units in Xenopus chromosomal ribosomal DNA: A test of a stochastic model for maintaining intraspecies homogeneity ⬇️

scientific article published on May 25, 1974

Peak calling by Sparse Enrichment Analysis for CUT&RUN chromatin profiling

scientific article published on 12 July 2019

Phylogeny as the basis for naming histones

scientific article published on 19 July 2013

Position-effect variegation and chromosome structure of a heat shock puff in Drosophila ⬇️

scientific article published on 01 January 1981

Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila

scientific article

Positive selection of Iris, a retroviral envelope-derived host gene in Drosophila melanogaster

scientific article

Precise genome-wide mapping of single nucleosomes and linkers in vivo

scientific article published on 9 February 2018

Predicting the effects of amino acid substitutions on protein function

scientific article

Profiling the epigenome at home

scientific article published on 17 April 2020

Quantitative MNase-seq accurately maps nucleosome occupancy levels

scientific article published on 13 September 2019

Reconstitution of hemisomes on budding yeast centromeric DNA.

scientific article

Recurrent evolution of DNA-binding motifs in the Drosophila centromeric histone

scientific article

Regulation of nucleosome dynamics by histone modifications

scientific article

Remarkable Evolutionary Plasticity of Centromeric Chromatin

scientific article published in December 2017

Repetitive arrays containing a housekeeping gene have altered polytene chromosome morphology in Drosophila ⬇️

scientific article published on May 1, 1998

Retention of induced mutations in a Drosophila reverse-genetic resource

scientific article published on 9 September 2008

SIFT web server: predicting effects of amino acid substitutions on proteins ⬇️

scientific article published on June 11, 2012

Salt fractionation of nucleosomes for genome-wide profiling

scientific article

Self-perpetuating structural states in biology, disease, and genetics

scientific article

Sequence of aDrosophilaDNA segment that functions inSaccharomyces Cerevisiaeand its regulation by a yeast promoter ⬇️

scientific article published on February 11, 1983

Sequencing of a rice centromere uncovers active genes

scientific article

Short H2A histone variants are expressed in cancer

scientific article published on 20 January 2021

Silencing of transposons in plant genomes: kick them when they're down

scientific article

Simple and Complex Centromeric Satellites in Drosophila Sibling Species

scientific article published on 5 January 2018

Simultaneous Discovery of Cell-Free DNA and the Nucleosome Ladder.

scientific article published in May 2018

Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression

scientific article published on 12 April 2021

Something from nothing: the evolution and utility of satellite repeats ⬇️

scientific article published on May 1, 1998

Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis.

scientific article

Spreading of silent chromatin: inaction at a distance

scientific article

Summary: The Nucleus--A Close-Knit Community of Dynamic Structures ⬇️

scientific article published on January 1, 2010

Surveying the epigenomic landscape, one base at a time ⬇️

scientific article published on October 22, 2012

TILLING to detect induced mutations in soybean.

scientific article

Targeted in situ genome-wide profiling with high efficiency for low cell numbers

scientific article published on 12 April 2018

Tech.Sight. Phage display. Affinity selection from biological libraries

scientific article

Tetrameric structure of centromeric nucleosomes in interphase Drosophila cells

scientific article

The CentO satellite confers translational and rotational phasing on cenH3 nucleosomes in rice centromeres

scientific article

The H3.3K27M oncohistone antagonizes reprogramming in Drosophila

scientific article published on 19 July 2021

The INTACT method for cell type–specific gene expression and chromatin profiling in Arabidopsis thaliana ⬇️

scientific article published on December 16, 2010

The budding yeast Centromere DNA Element II wraps a stable Cse4 hemisome in either orientation in vivo

scientific article published on 15 April 2014

The epigenetic progenitor origin of human cancer

scientific article (publication date: 2006)

The structure of a virus-encoded nucleosome

scientific article published on 29 April 2021

The unconventional structure of centromeric nucleosomes

scientific article

Trans- and cis-acting effects of Firre on epigenetic features of the inactive X chromosome

scientific article published on 27 November 2020

Transcribing Centromeres: Noncoding RNAs and Kinetochore Assembly

scientific article published on 02 June 2018

Transcription and Remodeling Produce Asymmetrically Unwrapped Nucleosomal Intermediates.

scientific article published on 6 December 2017

Transcription and histone modifications in the recombination-free region spanning a rice centromere.

scientific article published on 4 November 2005

Transcription at two heat shock loci in Drosophila ⬇️

scientific article published on October 1, 1977

Transcription terminates in yeast distal to a control sequence ⬇️

scientific article published on June 1, 1983

Tripartite organization of centromeric chromatin in budding yeast

scientific article published on 19 December 2011

Unexpected conformational variations of the human centromeric chromatin complex

scientific article published on 31 January 2018

Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing ⬇️

scientific article (publication date: June 1984)

Unlocking the secrets of the genome

scientific article

Using the blocks database to recognize functional domains

scientific article published in August 2002

What makes a centromere?

scientific article published on 06 February 2020

“Point” Centromeres of Saccharomyces Harbor Single Centromere-Specific Nucleosomes ⬇️

scientific article published on January 10, 2012

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