Search filters

List of works by Susana Campino

A Bayesian approach using covariance of single nucleotide polymorphism data to detect differences in linkage disequilibrium patterns between groups of individuals

scientific article

A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data

scientific article

A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains

scientific article

A forward genetic screen reveals a primary role for Plasmodium falciparum Reticulocyte Binding Protein Homologue 2a and 2b in determining alternative erythrocyte invasion pathways ⬇️

scientific article published on 29 November 2018

A genetic association study in the Gambia using tagging polymorphisms in the major histocompatibility complex class III region implicates a HLA-B associated transcript 2 polymorphism in severe malaria susceptibility

scientific article

A molecular barcode to inform the geographical origin and transmission dynamics of Plasmodium vivax malaria

scientific article published on 13 February 2020

A reference genome and methylome for the Plasmodium knowlesi A1-H.1 line

scientific article published on 16 December 2017

A transcriptional switch underlies commitment to sexual development in malaria parasites

scientific article (publication date: 13 March 2014)

Allelic heterogeneity of G6PD deficiency in West Africa and severe malaria susceptibility

scientific article

An In-Solution Hybridisation Method for the Isolation of Pathogen DNA from Human DNA-rich Clinical Samples for Analysis by NGS

scientific article

An analysis of large structural variation in global Plasmodium falciparum isolates identifies a novel duplication of the chloroquine resistance associated gene.

scientific article published on 4 June 2019

An effective method to purify Plasmodium falciparum DNA directly from clinical blood samples for whole genome high-throughput sequencing

scientific article

An integrated whole genome analysis of Mycobacterium tuberculosis reveals insights into relationship between its genome, transcriptome and methylome

scholarly article by Paula J Gomez-Gonzalez et al published 26 March 2019 in Scientific Reports

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

scientific article (publication date: 19 July 2012)

Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations

scientific article published on 18 September 2017

Association of the GNAS locus with severe malaria

scientific article published on 26 October 2008

Bead-based assays to simultaneously detect multiple human inherited blood disorders associated with malaria

scholarly article by Lynn Grignard et al published 21 January 2019 in Malaria Journal

Candidate human genetic polymorphisms and severe malaria in a Tanzanian population

scientific article

Candidate polymorphisms and severe malaria in a Malian population

scientific article

Characterisation of the opposing effects of G6PD deficiency on cerebral malaria and severe malarial anaemia

scientific article published on 09 January 2017

Characterization of Within-Host Plasmodium falciparum Diversity Using Next-Generation Sequence Data

scientific article (publication date: 29 February 2012)

Characterizing the impact of sustained sulfadoxine/pyrimethamine use upon the Plasmodium falciparum population in Malawi

scientific article

Diabetes protection and restoration of thymocyte apoptosis in NOD Idd6 congenic strains

scientific article

Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients

scientific article published in 2011

Effective preparation of Plasmodium vivax field isolates for high-throughput whole genome sequencing

scientific article

Further evidence supporting a role for gs signal transduction in severe malaria pathogenesis

scientific article

G6PD deficiency alleles in a malaria-endemic region in the Western Brazilian Amazon

scientific article

Genetic architecture of artemisinin-resistant Plasmodium falciparum

scientific article (publication date: March 2015)

Genetic determinants of anti-malarial acquired immunity in a large multi-centre study

scientific article

Genetic diversity of next generation antimalarial targets: A baseline for drug resistance surveillance programmes

scientific article published on 09 March 2017

Genetic diversity of the Plasmodium falciparum GTP-cyclohydrolase 1, dihydrofolate reductase and dihydropteroate synthetase genes reveals new insights into sulfadoxine-pyrimethamine antimalarial drug resistance

scientific article published on 31 December 2020

Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia

scientific article published on 17 December 2012

Genome variation and meiotic recombination in Plasmodium falciparum: insights from deep sequencing of genetic crosses

Genome-wide and fine-resolution association analysis of malaria in West Africa

scientific article

Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya

scientific article

Genomic analysis of local variation and recent evolution in Plasmodium vivax

scientific article

Genomic epidemiology of the current wave of artemisinin resistant malaria

scholarly article by Roberto Amato et al published 22 May 2015 in bioRxiv

Genomic variation in Plasmodium vivax malaria reveals regions under selective pressure

scientific article

Genomic variation in two gametocyte non-producing Plasmodium falciparum clonal lines

scientific article published on 21 April 2016

Global analysis of Plasmodium falciparum histidine-rich protein-2 (pfhrp2) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis

scientific article published on 2 May 2018

Glucose-6-phosphate dehydrogenase polymorphisms and susceptibility to mild malaria in Dogon and Fulani, Mali

scientific article

High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta.

scientific article

Human candidate polymorphisms in sympatric ethnic groups differing in malaria susceptibility in Mali

scientific article (publication date: 2013)

Identification of common genetic variation that modulates alternative splicing

scientific article

Identification of two cerebral malaria resistance loci using an inbred wild-derived mouse strain

scientific article

Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum

scientific article published on 16 August 2016

Investigation of host candidate malaria-associated risk/protective SNPs in a Brazilian Amazonian population

scientific article

K13-propeller polymorphisms in plasmodium falciparum parasites from sub-saharan Africa

scientific article published on 2 November 2014

Lack of association of interferon regulatory factor 1 with severe malaria in affected child-parental trio studies across three African populations

scientific article

Localization of a long-range cis-regulatory element of IL13 by allelic transcript ratio mapping

scientific article

Long read assemblies of geographically dispersed isolates reveal highly structured subtelomeres

article

Mendelian and complex genetics of susceptibility and resistance to parasitic infections

scientific article published on 4 October 2006

Methylation in Mycobacterium tuberculosis is lineage specific with associated mutations present globally

scientific article published on 9 January 2018

Modest heterologous protection after Plasmodium falciparum sporozoite immunization: a double-blind randomized controlled clinical trial

scientific article published on 13 September 2017

Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia

scientific article published on 28 April 2013

Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance.

scientific article

Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania

scientific article published on 30 January 2018

Optimized whole-genome amplification strategy for extremely AT-biased template

scientific article

Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes.

scientific article

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis

scientific article published on 13 May 2015

Plasmodium falciparum infection during pregnancy impairs fetal head growth: prospective and populational-based retrospective studies

Population genetic analysis of Plasmodium falciparum parasites using a customized Illumina GoldenGate genotyping assay

scientific article

Population genomic scan for candidate signatures of balancing selection to guide antigen characterization in malaria parasites

scientific article

Positive selection of a CD36 nonsense variant in sub-saharan Africa, but no association with severe malaria phenotypes

scientific article published on 29 April 2009

PrimedRPA: primer design for recombinase polymerase amplification assays

scholarly article by Matthew Higgins published in August 2018

Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages

scientific article

Removing the bottleneck in whole genome sequencing of Mycobacterium tuberculosis for rapid drug resistance analysis: a call to action

scientific article

Robust detection of point mutations involved in multidrug-resistant Mycobacterium tuberculosis in the presence of co-occurrent resistance markers

scientific article published on 21 December 2020

SnoopCGH: software for visualizing comparative genomic hybridization data

scientific article (publication date: 15 October 2009)

Surveillance of Aedes aegypti populations in the city of Praia, Cape Verde: Zika virus infection, insecticide resistance and genetic diversity

scientific article published on 21 September 2020

TLR9 polymorphisms in African populations: no association with severe malaria, but evidence of cis-variants acting on gene expression

scientific article published on 13 March 2009

The role of the red blood cell in host defence against falciparum malaria: an expanding repertoire of evolutionary alterations

scientific article published on 23 August 2017

The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs

scientific article

Tumor necrosis factor and lymphotoxin-alpha polymorphisms and severe malaria in African populations

scientific article published on February 2009

Using CF11 cellulose columns to inexpensively and effectively remove human DNA from Plasmodium falciparum-infected whole blood samples

scientific article published on 10 February 2012

Validating discovered Cis-acting regulatory genetic variants: application of an allele specific expression approach to HapMap populations

scientific article

VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data

scientific article (publication date: 15 November 2012)

Whole-genome scans provide evidence of adaptive evolution in Malawian Plasmodium falciparum isolates

scientific article

Zika might not be acting alone: Using an ecological study approach to investigate potential co-acting risk factors for an unusual pattern of microcephaly in Brazil

scientific article published in PLoS ONE

estMOI: estimating multiplicity of infection using parasite deep sequencing data

scientific article

Paulina is supported by:

About Paulina

Help