List of works by Sarah Auburn

A Bayesian approach using covariance of single nucleotide polymorphism data to detect differences in linkage disequilibrium patterns between groups of individuals

scientific article

A genetic association study in the Gambia using tagging polymorphisms in the major histocompatibility complex class III region implicates a HLA-B associated transcript 2 polymorphism in severe malaria susceptibility

scientific article

A new Plasmodium vivax reference sequence with improved assembly of the subtelomeres reveals an abundance of pir genes

scientific article

A prospective comparative study of knowlesi, falciparum, and vivax malaria in Sabah, Malaysia: high proportion with severe disease from Plasmodium knowlesi and Plasmodium vivax but no mortality with early referral and artesunate therapy

scientific article

Allelic heterogeneity of G6PD deficiency in West Africa and severe malaria susceptibility

scientific article

An effective method to purify Plasmodium falciparum DNA directly from clinical blood samples for whole genome high-throughput sequencing

scientific article

An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

scientific article (publication date: 19 July 2012)

Association of the GNAS locus with severe malaria

scientific article published on 26 October 2008

Challenges for achieving safe and effective radical cure of Plasmodium vivax: a round table discussion of the APMEN Vivax Working Group

scientific article

Characterization of Within-Host Plasmodium falciparum Diversity Using Next-Generation Sequence Data

scientific article (publication date: 29 February 2012)

Chloroquine efficacy for Plasmodium vivax in Myanmar in populations with high genetic diversity and moderate parasite gene flow

scientific article published on 10 July 2017

Chloroquine efficacy for Plasmodium vivax malaria treatment in southern Ethiopia

scientific article

Common variation in the ABO glycosyltransferase is associated with susceptibility to severe Plasmodium falciparum malaria

scientific article

Comparison of artemether-lumefantrine and chloroquine with and without primaquine for the treatment of Plasmodium vivax infection in Ethiopia: A randomized controlled trial

scientific article

Contrasting Transmission Dynamics of Co-endemic Plasmodium vivax and P. falciparum: Implications for Malaria Control and Elimination

scientific article (publication date: May 2015)

Dihydrofolate-Reductase Mutations in Plasmodium knowlesi Appear Unrelated to Selective Drug Pressure from Putative Human-To-Human Transmission in Sabah, Malaysia

scientific article

Dissecting malaria biology and epidemiology using population genetics and genomics

scientific article

Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients

scientific article published in 2011

Effective preparation of Plasmodium vivax field isolates for high-throughput whole genome sequencing

scientific article

Efficacy of Artesunate-mefloquine for Chloroquine-resistant Plasmodium vivax Malaria in Malaysia: An Open-label, Randomized, Controlled Trial

scientific article published on 22 April 2016

Elusive Plasmodium Species Complete the Human Malaria Genome Set

scientific article (publication date: 12 May 2016)

Emergence of artemisinin-resistant Plasmodium falciparum with kelch13 C580Y mutations on the island of New Guinea

scientific article published on 15 December 2020

Expression of Plasmodium vivax crt-o Is Related to Parasite Stage but Not Ex Vivo Chloroquine Susceptibility.

scientific article published on 2 November 2015

Further Evidence of Increasing Diversity of Plasmodium vivax in the Republic of Korea in Recent Years

scientific article

Further evidence supporting a role for gs signal transduction in severe malaria pathogenesis

scientific article

G6PD Deficiency and Antimalarial Efficacy for Uncomplicated Malaria in Bangladesh: A Prospective Observational Study

scientific article

Genetic determinants of anti-malarial acquired immunity in a large multi-centre study

scientific article

Genetic diversity and population structure of Plasmodium vivax in Central China

scientific article

Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia

scientific article published on 17 December 2012

Genetic micro-epidemiology of malaria in Papua Indonesia: Extensive P. vivax diversity and a distinct subpopulation of asymptomatic P. falciparum infections ⬇️

scientific article

Genome-wide and fine-resolution association analysis of malaria in West Africa

scientific article

Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya

scientific article

Genomic Analysis Reveals a Common Breakpoint in Amplifications of the Plasmodium vivax Multidrug Resistance 1 Locus in Thailand

scientific article published on 24 July 2016

Genomic Characterization of Recrudescent Plasmodium malariae after Treatment with Artemether/Lumefantrine

scientific article published on 15 August 2017

Genomic analysis of Plasmodium vivax in southern Ethiopia reveals selective pressures in multiple parasite mechanisms

scientific article published on 01 October 2019

Genomic analysis of a pre-elimination Malaysian Plasmodium vivax population reveals selective pressures and changing transmission dynamics.

scientific article

Genomic analysis of local variation and recent evolution in Plasmodium vivax

scientific article

Genomic epidemiology of the current wave of artemisinin resistant malaria

scholarly article by Roberto Amato et al published 22 May 2015 in bioRxiv

Implementing parasite genotyping into national surveillance frameworks: feedback from control programmes and researchers in the Asia-Pacific region

scientific article published on 27 July 2020

Lack of association of interferon regulatory factor 1 with severe malaria in affected child-parental trio studies across three African populations

scientific article

Molecular Epidemiology of P. vivax in Iran: High Diversity and Complex Sub-Structure Using Neutral Markers, but No Evidence of Y976F Mutation at pvmdr1.

scientific article

Molecular analysis demonstrates high prevalence of chloroquine resistance but no evidence of artemisinin resistance in Plasmodium falciparum in the Chittagong Hill Tracts of Bangladesh.

scientific article published on 15 August 2017

Molecular surveillance over 14 years confirms reduction of Plasmodium vivax and falciparum transmission after implementation of Artemisinin-based combination therapy in Papua, Indonesia

scientific article published on 07 May 2020

Multi-locus genotyping reveals established endemicity of a geographically distinct Plasmodium vivax population in Mauritania, West Africa

scientific article published on 16 December 2020

Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia

scientific article published on 28 April 2013

Phenotypic and genotypic characterisation of drug-resistant Plasmodium vivax.

scientific article

Plasmodium falciparum artemisinin resistance monitoring in Sabah, Malaysia: in vivo therapeutic efficacy and kelch13 molecular marker surveillance

scientific article published on 10 December 2018

Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution ⬇️

scientific article

Plasmodium vivax population structure and transmission dynamics in Sabah Malaysia

scientific article

Population genetic analysis of Plasmodium falciparum parasites using a customized Illumina GoldenGate genotyping assay

scientific article

Positive selection of a CD36 nonsense variant in sub-saharan Africa, but no association with severe malaria phenotypes

scientific article published on 29 April 2009

Review of key knowledge gaps in glucose-6-phosphate dehydrogenase deficiency detection with regard to the safe clinical deployment of 8-aminoquinoline treatment regimens: a workshop report

scientific article

Short-course primaquine for the radical cure of Plasmodium vivax malaria: a multicentre, randomised, placebo-controlled non-inferiority trial

scientific article published on 18 July 2019

SnoopCGH: software for visualizing comparative genomic hybridization data

scientific article (publication date: 15 October 2009)

Submicroscopic and Asymptomatic Plasmodium Parasitaemia Associated with Significant Risk of Anaemia in Papua, Indonesia

scientific article

TLR9 polymorphisms in African populations: no association with severe malaria, but evidence of cis-variants acting on gene expression

scientific article published on 13 March 2009

Transfusion-transmitted severe Plasmodium knowlesi malaria in a splenectomized patient with beta-thalassaemia major in Sabah, Malaysia: a case report

scientific article published on 12 July 2016

Tumor necrosis factor and lymphotoxin-alpha polymorphisms and severe malaria in African populations

scientific article published on February 2009

Using CF11 cellulose columns to inexpensively and effectively remove human DNA from Plasmodium falciparum-infected whole blood samples

scientific article published on 10 February 2012

Validating discovered Cis-acting regulatory genetic variants: application of an allele specific expression approach to HapMap populations

scientific article

VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data

scientific article (publication date: 15 November 2012)

Variation in Complexity of Infection and Transmission Stability between Neighbouring Populations of Plasmodium vivax in Southern Ethiopia

scientific article published on 15 October 2015

Variation in the ICAM1 gene is not associated with severe malaria phenotypes

scientific article published on 5 June 2008

VivaxGEN: An open access platform for comparative analysis of short tandem repeat genotyping data in Plasmodium vivax populations

scientific article

Where chloroquine still works: the genetic make-up and susceptibility of Plasmodium vivax to chloroquine plus primaquine in Bhutan

scientific article

Whole genome sequencing of Plasmodium vivax isolates reveals frequent sequence and structural polymorphisms in erythrocyte binding genes

scientific article published on 12 October 2020

Whole genome sequencing of amplified Plasmodium knowlesi DNA from unprocessed blood reveals genetic exchange events between Malaysian Peninsular and Borneo subpopulations

scientific article published on 08 July 2019

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