List of works by Bronwyn L. MacInnis

A genome wide association study of Plasmodium falciparum susceptibility to 22 antimalarial drugs in Kenya

scientific article (publication date: 2014)

Adaptive introgression between Anopheles sibling species eliminates a major genomic island but not reproductive isolation

scientific article

An effective method to purify Plasmodium falciparum DNA directly from clinical blood samples for whole genome high-throughput sequencing

scientific article

Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness

scientific article published in 2022

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

scientific article (publication date: 19 July 2012)

Bidirectional temperature-sensing by a single thermosensory neuron in C. elegans

scientific article published on August 2008

Bidirectional thermotaxis in Caenorhabditis elegans is mediated by distinct sensorimotor strategies driven by the AFD thermosensory neurons

scientific article

Changes in malaria parasite drug resistance in an endemic population over a 25-year period with resulting genomic evidence of selection

scientific article

Characterization of Plasmodium falciparum structure in Nigeria with malaria SNPs barcode

scholarly article published by Pardis C. Sabeti in 2018

Characterization of Within-Host Plasmodium falciparum Diversity Using Next-Generation Sequence Data

scientific article (publication date: 29 February 2012)

Co-circulating mumps lineages at multiple geographic scales

Combining genomics and epidemiology to track mumps virus transmission in the United States

scientific article published on 11 February 2020

Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity

scientific article published on 16 July 2015

De Novo Mutations Resolve Disease Transmission Pathways in Clonal Malaria.

scientific article

Detection of low-density Plasmodium falciparum infections using amplicon deep sequencing

scientific article published on 01 July 2019

Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients

scientific article published in 2011

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

scientific article

Effective preparation of Plasmodium vivax field isolates for high-throughput whole genome sequencing

scientific article

Efficient depletion of host DNA contamination in malaria clinical sequencing

scientific article

Field-deployable viral diagnostics using CRISPR-Cas13.

scientific article published in April 2018

Genetic architecture of artemisinin-resistant Plasmodium falciparum

scientific article (publication date: March 2015)

Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia

scientific article published on 17 December 2012

Genetic relatedness analysis reveals the cotransmission of genetically related Plasmodium falciparum parasites in Thiès, Senegal

scientific article published on 24 January 2017

Genome sequencing reveals Zika virus diversity and spread in the Americas

scientific article (publication date: 18 February 2017)

Genome variation and meiotic recombination in Plasmodium falciparum: insights from deep sequencing of genetic crosses

Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity

scientific article

Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018

article by Katherine J Siddle et al published 17 October 2018 in The New England Journal of Medicine

Genomic analysis of local variation and recent evolution in Plasmodium vivax

scientific article

Genomic epidemiology of the current wave of artemisinin resistant malaria

scholarly article by Roberto Amato et al published 22 May 2015 in bioRxiv

Genomic epidemiology reveals multiple introductions of Zika virus into the United States ⬇️

scientific article

Heat avoidance is regulated by transient receptor potential (TRP) channels and a neuropeptide signaling pathway in Caenorhabditis elegans

scientific article

Host-mediated selection impacts the diversity of Plasmodium falciparum antigens within infections.

scientific article published on 11 April 2018

Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum

scientific article published on 16 August 2016

Independent emergence of artemisinin resistance mutations among Plasmodium falciparum in Southeast Asia

scientific article

K13-propeller polymorphisms in plasmodium falciparum parasites from sub-saharan Africa

scientific article published on 2 November 2014

Malaria genomics meets drug-resistance phenotyping in the field

scientific article published on 11 August 2009

Multiple introductions of Zika virus into the United States revealed through genomic epidemiology

scientific article

Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia

scientific article published on 28 April 2013

Natural diversity of the malaria vector Anopheles gambiae

scholarly article by Alistair Miles et al published 22 December 2016 in bioRxiv

Optimized whole-genome amplification strategy for extremely AT-biased template

scientific article

Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes.

scientific article

Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events

scientific article published on 10 December 2020

Plasmodium vivax transcriptional profiling of low input cryopreserved isolates through the intraerythrocytic development cycle

scientific article published on 02 March 2020

Population genetic analysis of Plasmodium falciparum parasites using a customized Illumina GoldenGate genotyping assay

scientific article

Population genomic scan for candidate signatures of balancing selection to guide antigen characterization in malaria parasites

scientific article

Real-time Metagenomic Analysis of Undiagnosed Fever Cases Unveils a Yellow Fever Outbreak in Edo State, Nigeria

scientific article published on 21 February 2020

Regulation of Wallerian degeneration and nerve growth factor withdrawal-induced pruning of axons of sympathetic neurons by the proteasome and the MEK/Erk pathway

scientific journal article

Retrograde support of neuronal survival without retrograde transport of nerve growth factor

scientific article published on 17 January 2002

Retrograde transport of neurotrophins: fact and function

scientific article published on February 2004

SnoopCGH: software for visualizing comparative genomic hybridization data

scientific article (publication date: 15 October 2009)

Spatial requirements for TrkA kinase activity in the support of neuronal survival and axon growth in rat sympathetic neurons ⬇️

scientific article published on December 1, 2003

Spread of artemisinin resistance in Plasmodium falciparum malaria

scientific article published on 31 July 2014

Thermotaxis is a robust mechanism for thermoregulation in Caenorhabditis elegans nematodes

scientific article

Whole-genome scans provide evidence of adaptive evolution in Malawian Plasmodium falciparum isolates

scientific article

Zika virus evolution and spread in the Americas

scientific article

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