List of works - Jasper Koehorst

A FAIR approach to genomics ⬇️

PhD thesis

A chromosome-level assembly of the black tiger shrimp (Penaeus monodon) genome facilitates the identification of growth-associated genes

scientific article published on 16 March 2021

A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities

scientific article published on 26 June 2014

A protocol for adding knowledge to Wikidata, a case report

scientific article published on 07 April 2020

A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses ⬇️

January 2021 scholarly article

Assembly and Comparison of Ca. Neoehrlichia mikurensis Genomes

scientific article published in 2022

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View

scientific article published on 14 September 2015

Author Correction: A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses

scientific article published in 2023

Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata

scientific article (publication date: 2012)

Comparative genomics highlights symbiotic capacities and high metabolic flexibility of the marine genus Pseudovibrio

scientific article published on 8 January 2018

Comparative genomics of Streptococcus pyogenes M1 isolates differing in virulence and propensity to cause systemic infection in mice

scientific article published on 23 June 2015

Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data

scientific article (publication date: 6 December 2016)

Complete Genome Sequence of Akkermansia glycaniphila Strain PytT, a Mucin-Degrading Specialist of the Reticulated Python Gut.

scientific article published on 5 January 2017

Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216(T).

scientific article published on 24 August 2016

Concurrent Haloalkanoate Degradation and Chlorate Reduction by Pseudomonas chloritidismutans AW-1T.

scientific article

Differential translation tunes uneven production of operon-encoded proteins

scientific article published on 5 September 2013

Diversity of tryptophan halogenases in sponges of the genus Aplysina

scientific article published on 01 August 2019

Effects of Argonaute on Gene Expression in Thermus thermophilus

scientific article published on 22 April 2015

FAIR data station for lightweight metadata management and validation of omics studies

scientific article published in 2022

Galactocerebroside biosynthesis pathways of Mycoplasma species: an antigen triggering Guillain-Barré-Stohl syndrome

scientific article published on 27 March 2021

Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans

scientific article published in March 2014

Genome and proteome analysis of Pseudomonas chloritidismutans AW-1T that grows on n-decane with chlorate or oxygen as electron acceptor

scientific article published on 20 April 2015

Genomic convergence between Akkermansia muciniphila in different mammalian hosts

scientific article published on 29 October 2021

Interoperable genome annotation with GBOL, an extendable infrastructure for functional data mining

MEMOTE for standardized genome-scale metabolic model testing

scientific article published on 01 March 2020

Machine learning approaches to predict the Plant-associated phenotype of Xanthomonas strains

scientific article published on 23 November 2021

Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

Metabolic shift induced by synthetic co-cultivation promotes high yield of chain elongated acids from syngas

scientific article published on 02 December 2019

NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis

scientific article published on 01 January 2019

Organohalide-respiring Desulfoluna species isolated from marine environments

scientific article published on 02 January 2020

Persistence of Functional Protein Domains in Mycoplasma Species and their Role in Host Specificity and Synthetic Minimal Life.

scientific article published on 7 February 2017

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics.

scientific article published on 15 August 2016

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

scientific article published on 01 April 2020

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource

scientific article (publication date: 2015)

RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus