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List of works by Mary Ann Moran

A saltmarsh decomposition system and its ascomycetous laccase genes

article

Abundant and diverse bacteria involved in DMSP degradation in marine surface waters

scientific article

Adaptation of model genetically engineered microorganisms to lake water: growth rate enhancements and plasmid loss ⬇️

scientific article published on November 1, 1992

Analysis of internal transcribed spacer (ITS) regions of rRNA genes in fungal communities in a southeastern U.S. salt marsh.

scientific article

Analysis of microbial gene transcripts in environmental samples

scientific article published in July 2005

Analysis of sulfur-related transcription by Roseobacter communities using a taxon-specific functional gene microarray

article

Analyzing gene expression from marine microbial communities using environmental transcriptomics

scientific article

Assembly-free metagenomic analysis reveals new metabolic capabilities in surface ocean bacterioplankton

scientific article published on 16 May 2013

Bacterial Catabolism of Dimethylsulfoniopropionate (DMSP)

scientific article

Bacterial and archaeal community structure in the surface microlayer of high mountain lakes examined under two atmospheric aerosol loading scenarios

scientific article

Bacterial carbon processing by generalist species in the coastal ocean.

scientific article published on 27 January 2008

Bacterial community transcription patterns during a marine phytoplankton bloom

scientific article

Bacterial dimethylsulfoniopropionate degradation genes in the oligotrophic north pacific subtropical gyre

scientific article published on 10 February 2012

Bacterial secondary production on vascular plant detritus: relationships to detritus composition and degradation rate

scientific article

Bacterial taxa that limit sulfur flux from the ocean.

scientific article

Bacterial transcriptome remodeling during sequential co-culture with a marine dinoflagellate and diatom

scientific article published on 21 July 2017

Bacterioplankton assemblages transforming dissolved organic compounds in coastal seawater

scientific article

Biodegradation of Riverine Dissolved Organic Carbon in Five Estuaries of the Southeastern United States

article

Biogeochemical cycling of lignocellulosic carbon in marine and freshwater ecosystems: Relative contributions of procaryotes and eucaryotes1

Biomass Energy from Crop and Forest Residues

scientific article published in Science

Bromodeoxyuridine (BrdU) labeling and subsequent fluorescence activated cell sorting for culture-independent identification of dissolved organic carbon-degrading bacterioplankton

scientific article

Carbon Flow From Lignocellulose: A Simulation Analysis of a Detritus-Based Ecosystem

scientific article published in 1988

Carbon loss and optical property changes during long-term photochemical and biological degradation of estuarine dissolved organic matter

Changes in dimethylsulfoniopropionate demethylase gene assemblages in response to an induced phytoplankton bloom

scientific article

Chromophoric dissolved organic matter (CDOM) source characterization in the Louisiana Bight

Community analysis of high- and low-nucleic acid-containing bacteria in NW Mediterranean coastal waters using 16S rDNA pyrosequencing.

scientific article

Comparative Day/Night Metatranscriptomic Analysis of Microbial Communities in the North Pacific Subtropical Gyre

scholarly article published 3 May 2011

Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre

scientific article

Comparing effective population sizes of dominant marine alphaproteobacteria lineages

scientific article published on 5 December 2013

Comparison of chitinolytic enzymes from an alkaline, hypersaline lake and an estuary

scientific article published in January 2007

Contributions of three subsystems of a freshwater marsh to total bacterial secondary productivity

scientific article published on 01 September 1992

Cryptic carbon and sulfur cycling between surface ocean plankton

scientific article (publication date: 13 January 2015)

Deciphering ocean carbon in a changing world

scientific article

Decomposition of lignocellulose from a freshwater macrophyte by aero-aquatic fungi

article

Deep sequencing of a dimethylsulfoniopropionate-degrading gene (dmdA) by using PCR primer pairs designed on the basis of marine metagenomic data

scientific article

Diel gene expression profiles of a phosphorus limited mountain lake using metatranscriptomics.

scientific article

Dimethylsulfoniopropionate and methanethiol are important precursors of methionine and protein-sulfur in marine bacterioplankton.

scientific article

Dimethylsulfoniopropionate turnover is linked to the composition and dynamics of the bacterioplankton assemblage during a microcosm phytoplankton bloom.

scientific article

Dimethylsulfoniopropionate-dependent demethylase (DmdA) from Pelagibacter ubique and Silicibacter pomeroyi

scientific article

Direct extraction and purification of rRNA for ecological studies ⬇️

scientific article published on March 1, 1993

Dissolved humic substances of vascular plant origin in a coastal marine environment

article

Dissolved organic fluorophores in southeastern US coastal waters: correction method for eliminating Rayleigh and Raman scattering peaks in excitation–emission matrices

Distribution of terrestrially derived dissolved organic matter on the southeastern U.S. continental shelf

Diverse organization of genes of the beta-ketoadipate pathway in members of the marine Roseobacter lineage

scientific article published on March 2004

Diversity of the Ring-Cleaving Dioxygenase Gene pcaH in a Salt Marsh Bacterial Community ⬇️

scientific article published on December 1, 2001

Drought-induced variability in dissolved organic matter composition in a marsh-dominated estuary

article

Dynamics of bacterial and fungal communities on decaying salt marsh grass.

scientific article

Dynamics of microbial biomass and activity in five habitats of the Okefenokee Swamp ecosystem

scientific article (publication date: November 1987)

Ecological drivers of bacterial community assembly in synthetic phycospheres

scientific article published on 03 February 2020

Ecological genomics of marine Roseobacters

scientific article published on 25 May 2007

Effects of pH and plant source on lignocellulose biodegradation rates in two wetland ecosystems, the Okefenokee Swamp and a Georgia salt marsh1,2,3

article

Environmental, biochemical and genetic drivers of DMSP degradation and DMS production in the Sargasso Sea.

scientific article published on 10 February 2012

Erratum to: An updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3.

scientific article published on 26 November 2015

Evolution of divergent life history strategies in marine alphaproteobacteria

scientific article (publication date: 9 July 2013)

Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters

scientific article

Evolutionary ecology of the marine Roseobacter clade

scientific article

Experimental Identification of Small Non-Coding RNAs in the Model Marine Bacterium Ruegeria pomeroyi DSS-3.

scientific article

Expression patterns of elemental cycling genes in the Amazon River Plume.

scientific article published on 7 April 2017

Expression patterns reveal niche diversification in a marine microbial assemblage

scientific article published on 30 August 2012

Flow-cytometric cell sorting and subsequent molecular analyses for culture-independent identification of bacterioplankton involved in dimethylsulfoniopropionate transformations.

scientific article published on March 2005

Formation and bacterial utilization of dissolved organic carbon derived from detrital lignocellulose

article

Functional annotation and importance of marine bacterial transporters of plankton exometabolites

scientific article published in 2023

Functional metagenomic profiling of nine biomes

scientific article (publication date: 3 April 2008)

Functional metagenomic profiling of nine biomes

scientific article published in Nature

Genome Sequences and Metagenome-Assembled Genome Sequences of Microbial Communities Enriched on Phytoplankton Exometabolites

scientific article published on 23 July 2020

Genome characteristics of a generalist marine bacterial lineage

scientific article published on 14 January 2010

Genome content of uncultivated marine Roseobacters in the surface ocean

scientific article published on 19 August 2011

Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

scientific article

Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations

scientific article published on 08 January 2016

Genomes of Sea Microbes

scientific article published in 2007

Genomic insights into bacterial DMSP transformations

scientific article published on January 2012

Genomics and Metagenomics of Marine Prokaryotes

Horizontal Gene Transfer Among Bacteria in Aquatic Systems: Effects of Nutrient Concentrations

article

How do divergent ecological strategies emerge among marine bacterioplankton lineages?

scientific article published on 04 June 2015

Identification and characterization of humic substances-degrading bacterial isolates from an estuarine environment

scientific article published on 01 December 2000

Identifying labile DOM components in a coastal ocean through depleted bacterial transcripts and chemical signals

scientific article published on 30 July 2018

Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture

scientific article

In situ PCR for visualization of microscale distribution of specific genes and gene products in prokaryotic communities.

scientific article published on November 1995

In situ transcriptomic analysis of the globally important keystone N2-fixing taxon Crocosphaera watsonii.

scientific article published on 19 February 2009

Influence of adjacent land use on understory vegetation of New York forests

scholarly article published December 1984

Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria.

scientific article

Interaction of photochemical and microbial processes in the degradation of refractory dissolved organic matter from a coastal marine environment

article

Kinetics of microbial degradation of vascular plant material in two wetland ecosystems

scientific article published in May 1989

Linking a Bacterial Taxon to Sulfur Cycling in the Sea: Studies of the Marine Roseobacter Group

Linking activity and function to ecosystem dynamics in a coastal bacterioplankton community

scientific article published on 24 April 2014

Low genome content diversity of marine planktonic Thaumarchaeota

scientific article

Metabolism of dimethylsulphoniopropionate by Ruegeria pomeroyi DSS-3.

scientific article

Metagenomic and metatranscriptomic inventories of the lower Amazon River, May 2011.

scientific article published on 10 September 2015

Metatranscriptomic analysis of ammonia-oxidizing organisms in an estuarine bacterioplankton assemblage.

scientific article

Metatranscriptomic signature of exogenous polyamine utilization by coastal bacterioplankton

scientific article

Metatranscriptomics: Eavesdropping on Complex Microbial Communities

Microbial community response to seawater amendment in low-salinity tidal sediments

scientific article

Microbial controls on DMSP degradation and DMS formation in the Sargasso Sea

Microbial life in Bourlyashchy, the hottest thermal pool of Uzon Caldera, Kamchatka.

scientific article published on 8 September 2015

Microbial metabolites in the marine carbon cycle

scientific article published in 2022

Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom

scientific article published on 22 July 2019

Microdiversity and temporal dynamics of marine bacterial dimethylsulfoniopropionate genes

scientific article published on 12 March 2019

Microspatial gene expression patterns in the Amazon River Plume

scientific article

Modeling the Persistence of Lignocellulosic Detritus in Wetland Ecosystems

Mosaic patterns of B-vitamin synthesis and utilization in a natural marine microbial community.

scientific article published on 16 April 2018

Niche dimensions of a marine bacterium are identified using invasion studies in coastal seawater

scientific article published in 2021

Novel pathway for assimilation of dimethylsulphoniopropionate widespread in marine bacteria.

scientific article published on May 2011

Numerical dominance of a group of marine bacteria in the alpha-subclass of the class Proteobacteria in coastal seawater.

scientific article

Occurrence and expression of gene transfer agent genes in marine bacterioplankton

scientific article

Ocean biogeochemistry modeled with emergent trait-based genomics

scientific article

Omics for understanding microbial functional dynamics

scientific article published on 8 June 2011

Overview of the marine roseobacter lineage

scientific article

Oxidation of organic and inorganic sulfur compounds by aerobic heterotrophic marine bacteria

Oxygen and carbon dioxide mass balance for the estuarine-intertidal marsh complex of five rivers in the southeastern U.S

Phenotypic plasticity in heterotrophic marine microbial communities in continuous cultures

scientific article

Photochemical release of biologically available nitrogen from aquatic dissolved organic matter

scientific article published in Nature

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

scientific article published on 25 June 2013

Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013.

scientific article published on 30 July 2013

Quantitative analysis of a deeply sequenced marine microbial metatranscriptome

scientific article

Quantitative microbial metatranscriptomics

scientific article published in January 2014

Regulatory and functional diversity of methylmercaptopropionate coenzyme A ligases from the dimethylsulfoniopropionate demethylation pathway in Ruegeria pomeroyi DSS-3 and other proteobacteria

scientific article published on 17 January 2014

Resource partitioning of phytoplankton metabolites that support bacterial heterotrophy

scientific article published on 23 October 2020

Resourceful heterotrophs make the most of light in the coastal ocean

scientific article published on October 2007

Sagittula stellata gen. nov., sp. nov., a lignin-transforming bacterium from a coastal environment

scientific article (publication date: July 1997)

Scientists' warning to humanity: microorganisms and climate change

scientific article published on 18 June 2019

Screening for bacterial-fungal associations in a south-eastern US salt marsh using pre-established fungal monocultures

scientific article published in October 2005

Seasonal variation in the metatranscriptomes of a Thaumarchaeota population from SE USA coastal waters.

scientific article

Section 3 update: In situ PCR methodologies for visualization of microscale genetic and taxonomic diversities of prokaryotic communities

scholarly article published 2008

Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp. nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments.

scientific article

Single-taxon field measurements of bacterial gene regulation controlling DMSP fate

scientific article published on July 2015

Sizing up metatranscriptomics

scientific article

Small RNAs expressed during dimethylsulfoniopropionate degradation by a model marine bacterium

scientific article published on 12 July 2016

Sources, bioavailability, and photoreactivity of dissolved organic carbon in the Sacramento–San Joaquin River Delta

article

Spontaneous mutations of a model heterotrophic marine bacterium

scientific article published on 21 March 2017

Structures of dimethylsulfoniopropionate-dependent demethylase from the marine organismPelagabacter ubique

scientific article

Sulfur metabolites in the pelagic ocean

scientific article published on 04 September 2019

Sulfur metabolites that facilitate oceanic phytoplankton-bacteria carbon flux

scientific article published on 21 June 2019

The Amazon continuum dataset: quantitative metagenomic and metatranscriptomic inventories of the Amazon River plume, June 2010

scientific article

The Hudson River Ecosystem

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing

scientific article

The diverse bacterial community in intertidal, anaerobic sediments at Sapelo Island, Georgia

scientific article

The global ocean microbiome

scientific article

The role of nitrogen in chromophoric and fluorescent dissolved organic matter formation

article

The transcriptional response of prokaryotes to phytoplankton-derived dissolved organic matter in seawater

scientific article published on 25 February 2014

Toward a standards-compliant genomic and metagenomic publication record

scientific article

Transcriptional changes underlying elemental stoichiometry shifts in a marine heterotrophic bacterium

scientific article

Transcriptional response of Silicibacter pomeroyi DSS-3 to dimethylsulfoniopropionate (DMSP).

scientific article

Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill

scientific article

Transcriptomic analysis of a marine bacterial community enriched with dimethylsulfoniopropionate

scientific article

Transformation of sulfur compounds by an abundant lineage of marine bacteria in the alpha-subclass of the class Proteobacteria.

scientific article published on September 1999

Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon

scientific article

Unprecedented DMSP Concentrations in a Massive Dinoflagellate Bloom in Monterey Bay, CA

scientific article published on 14 November 2019

Use of internal standards for quantitative metatranscriptome and metagenome analysis

scientific article

Use of microautoradiography combined with fluorescence in situ hybridization to determine dimethylsulfoniopropionate incorporation by marine bacterioplankton taxa

scientific article published on August 2004

Variation in prokaryotic community composition as a function of resource availability in tidal creek sediments

scientific article

Variations in the spectral properties of freshwater and estuarine CDOM caused by partitioning onto river and estuarine sediments

scientific article published in 2005

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