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List of works by Janna Hastings

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Modeling Meets Metabolomics-The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism

article
ChEBI: a database and ontology for chemical entities of biological interest

scientific article from 2008
The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013

scientific article (publication date: 2013)
MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data

scientific article (publication date: 2013)
Chemical Entities of Biological Interest: an update

scientific article
ClassyFire: automated chemical classification with a comprehensive, computable taxonomy

scientific article (publication date: 4 November 2016)
ChEBI in 2016: Improved services and an expanding collection of metabolites

scientific article (publication date: 4 January 2016)
Controlled vocabularies and semantics in systems biology

scientific article (publication date: 25 October 2011)
UniChem: a unified chemical structure cross-referencing and identifier tracking system

scientific article (publication date: 14 January 2013)
The ChEMBL database as linked open data

scientific article (publication date: 2013)
The Chemical Information Ontology: provenance and disambiguation for chemical data on the biological semantic web

scientific article
eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment

scientific article published on March 21, 2015
PubChemRDF: towards the semantic annotation of PubChem compound and substance databases

article in the Journal of Cheminformatics
Data standards can boost metabolomics research, and if there is a will, there is a way

scientific article
The eNanoMapper database for nanomaterial safety information

scientific article
Structure-based classification and ontology in chemistry

scientific article (publication date: 5 April 2012)
The MetaboLights repository: curation challenges in metabolomics

scientific article (publication date: 2013)
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

scientific article
Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology

scientific article
Toxicology ontology perspectives

scientific article
A database for chemical proteomics: ChEBI.

scientific article
ChEBI: an open bioinformatics and cheminformatics resource

scientific article
BiNChE: a web tool and library for chemical enrichment analysis based on the ChEBI ontology

scientific article
Self-organizing ontology of biochemically relevant small molecules

scientific article
Exploiting disjointness axioms to improve semantic similarity measures

scientific article published on 03 September 2013
Cheminformatics

scientific article
ChEBI: a chemistry ontology and database

scientific article (publication date: 2010)
libChEBI: an API for accessing the ChEBI database

scientific article (publication date: March 2016)
Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies

scientific article (publication date: 2014)
DINTO: Using OWL Ontologies and SWRL Rules to Infer Drug-Drug Interactions and Their Mechanisms

scientific article published on 06 July 2015
Harmonising and linking biomedical and clinical data across disparate data archives to enable integrative cross-biobank research

scientific article
FMCS: a novel algorithm for the multiple MCS problem

scientific article (publication date: 2013)
The first eNanoMapper prototype: A substance database to support safe-by-design

scientific article (publication date: November 2014)
Food for thought ... A toxicology ontology roadmap

scientific article published on January 2012
Learning chemistry: exploring the suitability of machine learning for the task of structure-based chemical ontology classification

scientific article published on 16 March 2021
Unintended consequences of existential quantifications in biomedical ontologies

scientific article
OntoQuery: easy-to-use web-based OWL querying

scientific article published on 05 September 2013
Three hybrid classifiers for the detection of emotions in suicide notes

scientific article published on 30 January 2012
Ten recommendations for software engineering in research

scientific article published on December 4, 2014
Development of a formal system for representing behaviour-change theories

scientific article published on 08 April 2019
Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference

scientific article published on 03 September 2014
Ontologies for human behavior analysis and their application to clinical data

scientific article
Perspectives from the NanoSafety Modelling Cluster on the validation criteria for (Q)SAR models used in nanotechnology

scientific article published on 21 September 2017
Requirements for semantic biobanks

scientific article published on January 2012
Primer on Ontologies

scientific article published on January 2017
A scoping review of ontologies related to human behaviour change

article
Multi-Omics and Genome-Scale Modeling Reveal a Metabolic Shift During C. elegans Aging

scientific article published on 06 February 2019
The eNanoMapper database for nanomaterial safety information

WormJam: A consensus C. elegans Metabolic Reconstruction and Metabolomics Community and Workshop Series

scientific article published on 6 September 2017
Use of multiple ontologies to characterize the bioactivity of small molecules

scholarly article

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