List of works - Janna Hastings

A database for chemical proteomics: ChEBI.

scientific article

A scoping review of ontologies related to human behaviour change

article

Accessing and Using Chemical Property Databases

Addiction Theories and Constructs: a new series

scientific article published on 06 February 2019

An Ontology for Drug-drug Interactions ⬇️

An ontology-based modelling system (OBMS) for representing behaviour change theories applied to 76 theories

scientific article published on 23 July 2020

BiNChE: a web tool and library for chemical enrichment analysis based on the ChEBI ontology

scientific article

ChEBI in 2016: Improved services and an expanding collection of metabolites

scientific article (publication date: 4 January 2016)

ChEBI: a chemistry ontology and database

scientific article (publication date: 2010)

ChEBI: a database and ontology for chemical entities of biological interest

scientific article from 2008

ChEBI: an open bioinformatics and cheminformatics resource

scientific article

Chemical Entities of Biological Interest: an update

scientific article

Chemical Ontologies for Standardization, Knowledge Discovery, and Data Mining

Chemical ontologies: what are they, what are they for and what are the challenges.

scientific article published on 19 April 2011

Cheminformatics ⬇️

scientific article

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy

scientific article (publication date: 4 November 2016)

Controlled vocabularies and semantics in systems biology

scientific article (publication date: 25 October 2011)

DINTO: Using OWL Ontologies and SWRL Rules to Infer Drug-Drug Interactions and Their Mechanisms

scientific article published on 06 July 2015

Data standards can boost metabolomics research, and if there is a will, there is a way

scientific article

Development of a formal system for representing behaviour-change theories

scientific article published on 08 April 2019

Development of an Intervention Setting Ontology for behaviour change: Specifying where interventions take place

scientific article published on 10 June 2020

Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology

scientific article

Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference

scientific article published on 03 September 2014

Expanding natural product chemistry resources at the EBI

article

Exploiting disjointness axioms to improve semantic similarity measures

scientific article published on 03 September 2013

FMCS: a novel algorithm for the multiple MCS problem

scientific article (publication date: 2013)

Flow with the flux: Systems biology tools predict metabolic drivers of ageing in C. elegans

Food for thought ... A toxicology ontology roadmap

scientific article published on January 2012

From Affective Science to Psychiatric Disorder: Ontology as a Semantic Bridge

Harmonising and linking biomedical and clinical data across disparate data archives to enable integrative cross-biobank research

scientific article

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

scientific article (publication date: 20 March 2017)

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

scientific article

Identifying and evaluating ontologies related to human behaviour change interventions: a scoping review

article

Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies

scientific article (publication date: 2014)

Learning chemistry: exploring the suitability of machine learning for the task of structure-based chemical ontology classification

scientific article published on 16 March 2021

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data

scientific article (publication date: 2013)

Modeling Meets Metabolomics-The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism ⬇️

article

Multi-Omics and Genome-Scale Modeling Reveal a Metabolic Shift During C. elegans Aging

scientific article published on 06 February 2019

OntoQuery: easy-to-use web-based OWL querying

scientific article published on 05 September 2013

Ontologies for human behavior analysis and their application to clinical data

scientific article

Ontologies in Cheminformatics

Ontologies in Chemoinformatics

Ontologies relevant to behaviour change interventions: a method for their development

scientific article published on 18 December 2020

Ontologies relevant to behaviour change interventions: a method for their development

scientific article published on 03 August 2020

Ontologies relevant to behaviour change interventions: a method for their development

scientific article published on 10 June 2020

Perspectives from the NanoSafety Modelling Cluster on the validation criteria for (Q)SAR models used in nanotechnology

scientific article published on 21 September 2017

Primer on Ontologies

scientific article published on January 2017

Process attributes in bio-ontologies

scientific article

PubChemRDF: towards the semantic annotation of PubChem compound and substance databases ⬇️

Article in the Journal of Cheminformatics.

Representation of behaviour change interventions and their evaluation: Development of the Upper Level of the Behaviour Change Intervention Ontology

scientific article published on 06 January 2021

Representation of behaviour change interventions and their evaluation: Development of the Upper Level of the Behaviour Change Intervention Ontology

scientific article published on 10 June 2020

Requirements for semantic biobanks

scientific article published on January 2012

Self-organizing ontology of biochemically relevant small molecules

scientific article

Specifying who delivers behaviour change interventions: development of an Intervention Source Ontology

scientific article published in 2021

Structure-based classification and ontology in chemistry

scientific article (publication date: 5 April 2012)

Structured chemical class definitions and automated matching for chemical ontology evolution.

scientific article

Ten recommendations for software engineering in research

scientific article published on 4 December 2014

The Behaviour Change Technique Ontology: Transforming the Behaviour Change Technique Taxonomy v1

scientific article published in 2023

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013

scientific article (publication date: 2013)

The ChEMBL database as linked open data

scientific article (publication date: 2013)

The Chemical Information Ontology: provenance and disambiguation for chemical data on the biological semantic web

scientific article

The Emotion Ontology: Enabling Interdisciplinary Research in the Affective Sciences

The Human Behaviour-Change Project: An artificial intelligence system to answer questions about changing behaviour

scientific article published on 10 June 2020

The MetaboLights repository: curation challenges in metabolomics

scientific article (publication date: 2013)

The case for development of an E-cigarette Ontology (E-CigO) to improve quality, efficiency and clarity in the conduct and interpretation of research

scientific article published on 03 April 2020

The eNanoMapper database for nanomaterial safety information

scientific article

The eNanoMapper database for nanomaterial safety information

The first eNanoMapper prototype: A substance database to support safe-by-design ⬇️

scientific article (publication date: November 2014)

Theory and ontology in behavioural science

scientific article published on 01 March 2020

Three hybrid classifiers for the detection of emotions in suicide notes

scientific article published on 30 January 2012

Toxicology ontology perspectives

scientific article

UniChem: a unified chemical structure cross-referencing and identifier tracking system

scientific article (publication date: 14 January 2013)

Unintended consequences of existential quantifications in biomedical ontologies

scientific article

Use of multiple ontologies to characterize the bioactivity of small molecules ⬇️

scholarly article

Using Genome-Scale Metabolic Networks for Analysis, Visualization, and Integration of Targeted Metabolomics Data

scientific article published on 01 January 2020

Why and how to engage expert stakeholders in ontology development: insights from social and behavioural sciences

scientific article published on 23 March 2021

WormJam: A consensus C. elegans Metabolic Reconstruction and Metabolomics Community and Workshop Series

scientific article published on 6 September 2017

eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment

scientific article

libChEBI: an API for accessing the ChEBI database

scientific article (publication date: March 2016)

List of works by Janna Hastings

A database for chemical proteomics: ChEBI.

A scoping review of ontologies related to human behaviour change

Accessing and Using Chemical Property Databases

Addiction Theories and Constructs: a new series

An Ontology for Drug-drug Interactions ⬇️

An ontology-based modelling system (OBMS) for representing behaviour change theories applied to 76 theories

BiNChE: a web tool and library for chemical enrichment analysis based on the ChEBI ontology

ChEBI in 2016: Improved services and an expanding collection of metabolites

ChEBI: a chemistry ontology and database

ChEBI: a database and ontology for chemical entities of biological interest

ChEBI: an open bioinformatics and cheminformatics resource

Chemical Entities of Biological Interest: an update

Chemical Ontologies for Standardization, Knowledge Discovery, and Data Mining

Chemical ontologies: what are they, what are they for and what are the challenges.

Cheminformatics ⬇️

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy

Controlled vocabularies and semantics in systems biology

DINTO: Using OWL Ontologies and SWRL Rules to Infer Drug-Drug Interactions and Their Mechanisms

Data standards can boost metabolomics research, and if there is a will, there is a way

Development of a formal system for representing behaviour-change theories

Development of an Intervention Setting Ontology for behaviour change: Specifying where interventions take place

Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology

Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference

Expanding natural product chemistry resources at the EBI

Exploiting disjointness axioms to improve semantic similarity measures

FMCS: a novel algorithm for the multiple MCS problem

Flow with the flux: Systems biology tools predict metabolic drivers of ageing in C. elegans

Food for thought ... A toxicology ontology roadmap

From Affective Science to Psychiatric Disorder: Ontology as a Semantic Bridge

Harmonising and linking biomedical and clinical data across disparate data archives to enable integrative cross-biobank research

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

Identifying and evaluating ontologies related to human behaviour change interventions: a scoping review

Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies

Learning chemistry: exploring the suitability of machine learning for the task of structure-based chemical ontology classification

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data

Modeling Meets Metabolomics-The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism ⬇️

Multi-Omics and Genome-Scale Modeling Reveal a Metabolic Shift During C. elegans Aging

OntoQuery: easy-to-use web-based OWL querying

Ontologies for human behavior analysis and their application to clinical data

Ontologies in Cheminformatics

Ontologies in Chemoinformatics

Ontologies relevant to behaviour change interventions: a method for their development

Ontologies relevant to behaviour change interventions: a method for their development

Ontologies relevant to behaviour change interventions: a method for their development

Perspectives from the NanoSafety Modelling Cluster on the validation criteria for (Q)SAR models used in nanotechnology

Primer on Ontologies

Process attributes in bio-ontologies

PubChemRDF: towards the semantic annotation of PubChem compound and substance databases ⬇️

Representation of behaviour change interventions and their evaluation: Development of the Upper Level of the Behaviour Change Intervention Ontology

Representation of behaviour change interventions and their evaluation: Development of the Upper Level of the Behaviour Change Intervention Ontology

Requirements for semantic biobanks

Self-organizing ontology of biochemically relevant small molecules

Specifying who delivers behaviour change interventions: development of an Intervention Source Ontology

Structure-based classification and ontology in chemistry

Structured chemical class definitions and automated matching for chemical ontology evolution.

Ten recommendations for software engineering in research

The Behaviour Change Technique Ontology: Transforming the Behaviour Change Technique Taxonomy v1

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013

The ChEMBL database as linked open data

The Chemical Information Ontology: provenance and disambiguation for chemical data on the biological semantic web

The Emotion Ontology: Enabling Interdisciplinary Research in the Affective Sciences

The Human Behaviour-Change Project: An artificial intelligence system to answer questions about changing behaviour

The MetaboLights repository: curation challenges in metabolomics

The case for development of an E-cigarette Ontology (E-CigO) to improve quality, efficiency and clarity in the conduct and interpretation of research

The eNanoMapper database for nanomaterial safety information

The eNanoMapper database for nanomaterial safety information

The first eNanoMapper prototype: A substance database to support safe-by-design ⬇️

Theory and ontology in behavioural science

Three hybrid classifiers for the detection of emotions in suicide notes

Toxicology ontology perspectives

UniChem: a unified chemical structure cross-referencing and identifier tracking system

Unintended consequences of existential quantifications in biomedical ontologies

Use of multiple ontologies to characterize the bioactivity of small molecules ⬇️

Using Genome-Scale Metabolic Networks for Analysis, Visualization, and Integration of Targeted Metabolomics Data

Why and how to engage expert stakeholders in ontology development: insights from social and behavioural sciences

WormJam: A consensus C. elegans Metabolic Reconstruction and Metabolomics Community and Workshop Series

eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment

libChEBI: an API for accessing the ChEBI database