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List of works by Alok Bhattacharya

1H, 13C and 15N NMR assignments of an unusual Ca2+-binding protein from Entamoeba histolytica in its apo form

scientific article published on 19 December 2016

A C2 domain protein kinase initiates phagocytosis in the protozoan parasite Entamoeba histolytica ⬇️

scientific article published on January 1, 2011

A novel alpha kinase EhAK1 phosphorylates actin and regulates phagocytosis in Entamoeba histolytica

scientific article

A phagocytosis mutant of Entamoeba histolytica is less virulent due to deficient proteinase expression and release

scientific article

ABWGAT: anchor-based whole genome analysis tool

scientific article published on 14 October 2009

Amoebiasis and entamoeba species: unexplored liaisons

scientific article published in April 2013

An Entamoeba histolytica LINE/SINE pair inserts at common target sites cleaved by the restriction enzyme-like LINE-encoded endonuclease

scientific article

An integrated pipeline for next generation sequencing and annotation of the complete mitochondrial genome of the giant intestinal fluke, Fasciolopsis buski (Lankester, 1857) Looss, 1899.

scientific article

Analysis of IS6110 insertion sites provide a glimpse into genome evolution of Mycobacterium tuberculosis

scientific article published on 28 July 2015

Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood

scientific article

Analysis of the microRNA transcriptome and expression of different isomiRs in human peripheral blood mononuclear cells

scientific article

Anchor-Based Whole Genome Phylogeny (ABWGP): A Tool for Inferring Evolutionary Relationship among Closely Related Microorganims ⬇️

scientific article published on November 30, 2010

Antisense expression of a gene encoding a calcium-binding protein in transgenic tobacco leads to altered morphology and enhanced chlorophyll

scientific article published in March 2007

Application of SHAPE reveals in vivo RNA folding under normal and growth-stressed conditions in the human parasite Entamoeba histolytica

scientific article published on 22 November 2017

Autophosphorylation at Thr279 of Entamoeba histolytica atypical kinase EhAK1 is required for activity and regulation of erythrophagocytosis

scientific article

Autophosphorylation of Ser428 of EhC2PK Plays a Critical Role in Regulating Erythrophagocytosis in the Parasite Entamoeba histolytica ⬇️

scientific article published on February 8, 2012

Bioinformatics and functional analysis of an Entamoeba histolytica mannosyltransferase necessary for parasite complement resistance and hepatical infection

scientific article

Biosynthesis of Entamoeba histolytica proteophosphoglycan in vitro

scientific article

Blocking the expression of a calcium binding protein of the protozoan parasite Entamoeba histolytica by tetracycline regulatable antisense-RNA.

scientific article

CID-miRNA: a web server for prediction of novel miRNA precursors in human genome

scientific article published on 2 June 2008

Calcium-binding proteins of Entamoeba histolytica

scientific article

Characterization of the Entamoeba histolytica ornithine decarboxylase-like enzyme

scientific article

Classification of pathogenic microbes using a minimal set of single nucleotide polymorphisms derived from whole genome sequences

scientific article published on 9 February 2018

Comparative analysis of bacterial genomes: identification of divergent regions in mycobacterial strains using an anchor-based approach

scientific article published on 8 May 2007

Comparison of theoretical proteomes: identification of COGs with conserved and variable pI within the multimodal pI distribution

scientific article

Complex multifractal nature in Mycobacterium tuberculosis genome

scientific article published on 25 April 2017

Computational prediction and validation of C/D, H/ACA and Eh_U3 snoRNAs of Entamoeba histolytica ⬇️

scientific article published on August 14, 2012

Correction: Anchor-Based Whole Genome Phylogeny (ABWGP): A Tool for Inferring Evolutionary Relationship among Closely Related Microorganisms.

scientific article

Correction: Stress-induced nuclear depletion of 3'-5' exoribonuclease EhRrp6 and its role in growth and erythrophagocytosis

scientific article published in Journal of Biological Chemistry

Crystallization and preliminary crystallographic analysis of calcium-binding protein-2 from Entamoeba histolytica and its complexes with strontium and the IQ1 motif of myosin V.

scientific article

Cytosine DNA methylation at promoter of non LTR retrotransposon and heat shock protein gene (HSP70) of Entamoeba histolytica and lack of correlation with transcription status

scientific article published on 9 January 2017

Dictyostelium discoideum--a promising expression system for the production of eukaryotic proteins

scientific article published on 19 August 2008

Differential Expression Analysis for RNA-Seq Data

scientific article

Differential distribution of a SINE element in the Entamoeba histolytica and Entamoeba dispar genomes: role of the LINE-encoded endonuclease

scientific article

Differential use of multiple replication origins in the ribosomal DNA episome of the protozoan parasite Entamoeba histolytica

scientific article

EhRho1 regulates phagocytosis by modulating actin dynamics through EhFormin1 and EhProfilin1 in Entamoeba histolytica

scientific article published on 17 April 2018

EhRho1 regulates plasma membrane blebbing through PI3 kinase in Entamoeba histolytica

scientific article

Episodes of horizontal gene-transfer and gene-fusion led to co-existence of different metal-ion specific glyoxalase I.

scientific article published on 13 November 2013

Establishment of a transient transfection system and expression of firefly luciferase in Entamoeba invadens ⬇️

scientific article published on February 1, 2012

Expression and function of a family of transmembrane kinases from the protozoan parasite Entamoeba histolytica

scientific article published on September 2006

FosB regulates expression of miR-22 during PMA induced differentiation of K562 cells to megakaryocytes

scientific article published on 23 November 2016

Functional manipulation of a calcium-binding protein from Entamoeba histolytica guided by paramagnetic NMR

scientific article

Functionally conserved RNA-binding and protein-protein interaction properties of LINE-ORF1p in an ancient clade of non-LTR retrotransposons of Entamoeba histolytica

scientific article published on 25 November 2016

Genomic distribution of SINEs in Entamoeba histolytica strains: implication for genotyping

scientific article

Glycosylated inositol phospholipid from Entamoeba histolytica: identification and structural characterization

scientific article published on 4 October 2005

Heat Shock Protein 90 regulates encystation in Entamoeba

scientific article published on 13 October 2015

Homologous recombination occurs in Entamoeba and is enhanced during growth stress and stage conversion

scientific article

Identification and characterization of EhCaBP2. A second member of the calcium-binding protein family of the protozoan parasite Entamoeba histolytica

scientific article published on 7 January 2004

Identification and expression of stressosomal proteins in Mycobacterium marinum under various growth and stress conditions.

scientific article

Identification and partial characterization of a dynamin-like protein, EhDLP1, from the protist parasite Entamoeba histolytica

scientific article published on 13 November 2009

Identification of EhTIF-IA: The putative E. histolytica orthologue of the human ribosomal RNA transcription initiation factor-IA.

scientific article published on March 2016

Identification of Hot and Cold spots in genome of Mycobacterium tuberculosis using Shewhart Control Charts ⬇️

scientific article published on March 2, 2012

Identification of insertion hot spots for non-LTR retrotransposons: computational and biochemical application to Entamoeba histolytica

scientific article published on 13 October 2006

In memoriam: Louis S. "Buddy" Diamond (1920-2009).

scientific article published on 15 July 2010

Inhibitors of Escherichia coli serine acetyltransferase block proliferation of Entamoeba histolytica trophozoites

scientific article published on 5 October 2007

IsomiR processing during differentiation of myelogenous leukemic cell line K562 by phorbol ester PMA.

scientific article published on 16 October 2017

Lipids induce expression of serum-responsive transmembrane kinase EhTMKB1-9 in an early branching eukaryote Entamoeba histolytica

scientific article published on 26 March 2012

MGDD: Mycobacterium tuberculosis genome divergence database

scientific article

MTCID: A database of genetic polymorphisms in clinical isolates of Mycobacterium tuberculosis ⬇️

scientific article published on December 29, 2011

MicroRNAs modulate the dynamics of the NF-κB signaling pathway

scientific article

Mobile genetic elements in protozoan parasites

scientific article

Mutation Spectrum of GNE Myopathy in the Indian Sub-Continent.

scientific article published in January 2018

N- and C-terminal domains of the calcium binding protein EhCaBP1 of the parasite Entamoeba histolytica display distinct functions

scientific article

Next-Generation Anchor Based Phylogeny (NexABP): constructing phylogeny from next-generation sequencing data

scientific article

Nontranslated polyadenylated RNAs from Entamoeba histolytica

scientific article published on July 2003

Post-transcriptional regulation of ribosomal protein genes during serum starvation in Entamoeba histolytica

scientific article published on 3 August 2015

Prediction and analysis of canonical EF hand loop and qualitative estimation of Ca²⁺ binding affinity

scientific article

Prediction of novel precursor miRNAs using a context-sensitive hidden Markov model (CSHMM).

scientific article

Promoter analysis of palindromic transcription units in the ribosomal DNA circle of Entamoeba histolytica

scientific article

Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytica

scientific article published on 20 December 2012

Recombinant SINEs are formed at high frequency during induced retrotransposition in vivo

scientific article

Regulation of serum-responsive transmembrane kinase EhTMKB1-9 by an unsaturated lipid, oleic acid in protistan parasite Entamoeba histolytica.

scientific article

Ribosomal RNA and protein transcripts persist in the cysts of Entamoeba invadens

scientific article published on 29 May 2014

Self-circularizing 5′-ETS RNAs accumulate along with unprocessed pre ribosomal RNAs in growth-stressed Entamoeba histolytica ⬇️

scientific article published on March 6, 2012

Sequence specific 1H, 13C and 15N resonance assignments of a calmodulin-like calcium-binding protein from the protozoan parasite Entamoeba histolytica (EhCaM).

scientific article published on 11 April 2008

Serum stress responsive gene EhslncRNA of Entamoeba histolytica is a novel long noncoding RNA

scientific article

Serum-dependent selective expression of EhTMKB1-9, a member of Entamoeba histolytica B1 family of transmembrane kinases

scientific article

Single-nucleotide variations associated with Mycobacterium tuberculosis KwaZulu-Natal strains

scientific article published in September 2009

Stable transfection and continuous expression of heterologous genes in Entamoeba invadens ⬇️

scientific article published on March 7, 2012

Stress-dependent expression of a polymorphic, charged antigen in the protozoan parasite Entamoeba histolytica

scientific article

Structural characterization of a novel Ca2+-binding protein from Entamoeba histolytica: structural basis for the observed functional differences with its isoform

scientific article published on 10 January 2009

The Calmodulin-like calcium binding protein EhCaBP3 of Entamoeba histolytica regulates phagocytosis and is involved in actin dynamics

scientific article (publication date: December 2012)

The Entamoeba histolytica serum-inducible transmembrane kinase EhTMKB1-9 is involved in intestinal amebiasis

scientific article

The Entamoeba histolytica, Arp2/3 Complex Is Recruited to Phagocytic Cups through an Atypical Kinase EhAK1

scientific article (publication date: December 2015)

The LINEs and SINEs of Entamoeba histolytica: comparative analysis and genomic distribution

scientific article published on 23 March 2005

The calcium binding protein EhCaBP6 is a microtubular-end binding protein in Entamoeba histolytica

scientific article published on 14 August 2013

The calcium-binding protein of Entamoeba histolytica as a fusion partner for expression of peptides in Escherichia coli

scientific article

The genome of the protist parasite Entamoeba histolytica

scientific article

The mitochondrial genome of Paragonimus westermani (Kerbert, 1878), the Indian isolate of the lung fluke representative of the family Paragonimidae (Trematoda).

scientific article

The nucleolus in Entamoeba histolytica and Entamoeba invadens is located at the nuclear periphery

scientific article published on 3 May 2009

The ribosomal RNA transcription unit of Entamoeba invadens: accumulation of unprocessed pre-rRNA and a long non coding RNA during encystation

scientific article published on 5 November 2013

Trogocytosis by Entamoeba histolytica contributes to cell killing and tissue invasion

scientific article

Unique motifs identify PIG-A proteins from glycosyltransferases of the GT4 family

scientific article

miR-22 regulates expression of oncogenic neuro-epithelial transforming gene 1, NET1.

scientific article

miR-505-5p and miR-193b-3p: potential biomarkers of imatinib response in patients with chronic myeloid leukemia.

scientific article

miRNA-regulated dynamics in circadian oscillator models

scientific article

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