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List of works by Alan R. Bishop

A nonlinear dynamic model of DNA with a sequence-dependent stacking term

scientific article published on 05 March 2009

A rare functional noncoding variant at the GWAS-implicated MIR137/MIR2682 locus might confer risk to schizophrenia and bipolar disorder

scientific article

Allostery through protein-induced DNA bubbles

scientific article

Anharmonic electron and phonon effects in the c-axis infrared conductivity of high-Tc oxides.

scientific article

Anomalous relaxation and self-organization in nonequilibrium processes.

scientific article published on 22 May 2001

Attractive inverse square potential, U(1) gauge, and winding transitions

scientific article published on 20 February 2014

Binding of nucleoid-associated protein fis to DNA is regulated by DNA breathing dynamics

scientific article

Bound solitons in the ac-driven, damped nonlinear Schrödinger equation.

scientific article published in February 1994

Bright and dark excitons in semiconductor carbon nanotubes: insights from electronic structure calculations

scientific article published on 23 March 2009

CONTROLLABLE ADIABATIC MANIPULATION OF THE QUBIT STATE

Chaotic transport in deterministic sine-Gordon soliton ratchets.

scientific article published on 20 January 2009

Common characteristics of displacive and relaxor ferroelectrics

scholarly article in Physical Review B, vol. 81 no. 6, February 2010

Conformational dynamics of photoexcited conjugated molecules

scientific article published on 9 August 2002

Continuum approach to discreteness.

scientific article published on 4 April 2002

Correction: DNA Dynamics Is Likely to Be a Factor in the Genomic Nucleotide Repeats Expansions Related to Diseases.

scientific article

Coupled quasiparticle-boson systems: The semiclassical approximation and discrete nonlinear Schrödinger equation.

scientific article published in August 1995

Coupling fields and underlying space curvature: an augmented Lagrangian approach

scientific article published on 29 April 2003

Cross-polarized excitons in carbon nanotubes

scholarly article

DNA breathing dynamics distinguish binding from nonbinding consensus sites for transcription factor YY1 in cells

scientific article

DNA dynamically directs its own transcription initiation

scientific article published on 05 March 2004

DNA dynamics is likely to be a factor in the genomic nucleotide repeats expansions related to diseases

scientific article

DNA dynamics play a role as a basal transcription factor in the positioning and regulation of gene transcription initiation

scientific article

Delocalizing transition of Bose-Einstein condensates in optical lattices

scientific article published on 28 June 2002

Discrete breathers in a nonlinear polarizability model of ferroelectrics

scientific article published on 10 December 2012

Discrete nonlinear Schrödinger equation with defects.

scientific article

Discrete nonlinear model with substrate feedback.

scientific article published on 24 October 2002

Discrete solitons and vortices in hexagonal and honeycomb lattices: existence, stability, and dynamics

scientific article published on 29 December 2008

Discrete solitons and vortices on anisotropic lattices.

scientific article published on 28 October 2005

Domain walls in two-component dynamical lattices ⬇️

scientific article published on March 21, 2003

Dynamical playground of a higher-order cubic Ginzburg-Landau equation: From orbital connections and limit cycles to invariant tori and the onset of chaos ⬇️

scientific article

Dynamics and Role of Nonadiabatic Effects on Nonlinear Optical Response of Conjugated Polymers

Effect of nonadiabaticity and disorder on nonlinear optical susceptibilities

scholarly article in Physical Review B, vol. 59 no. 3, January 1999

Effects of competing short- and long-range dispersive interactions on discrete breathers.

scientific article published on 19 November 2001

Effects of rare-earth ion size on the stability of the coherent Jahn-Teller distortions in undoped perovskite manganites

scholarly article in Physical Review B, vol. 86 no. 18, November 2012

Effects of transport memory and nonlinear damping in a generalized Fisher's equation.

scientific article

Elasticity-driven nanoscale electronic structure in superconductors.

scientific article published on 31 July 2003

Electroabsorption in poly(paraphenylene vinylene) and PtI: Exciton vs band descriptions

Evaluating the role of coherent delocalized phonon-like modes in DNA cyclization

scientific article

Feigenbaum cascade of discrete breathers in a model of DNA.

scientific article published on 11 January 2011

Flux-lattice noise and symmetry breaking in frustrated Josephson-junction arrays.

scientific article

Generalized traveling-wave method, variational approach, and modified conserved quantities for the perturbed nonlinear Schrödinger equation.

scientific article published on 29 July 2010

Holes and magnetic textures in the two-dimensional Hubbard model.

scientific article

Hysteresis and metastability in the quenched turbulent dynamics of the complex Ginzburg-Landau equation.

scientific article published on 19 December 2001

Interaction between sine-Gordon breathers.

scientific article published on 25 July 2001

Kink stability, propagation, and length-scale competition in the periodically modulated sine-Gordon equation.

scientific article published in May 1994

Lattice dynamical analogies and differences between SrTiO3and EuTiO3revealed by phonon-dispersion relations and double-well potentials

scholarly article in Physical Review B, vol. 84 no. 18, November 2011

Length-scale competition for the one-dimensional nonlinear Schrödinger equation with spatially periodic potentials.

scientific article published in February 1993

Linear and nonlinear optical response of polyenes: A density matrix renormalization group study

Localization in physical systems described by discrete nonlinear Schrodinger-type equations.

scientific article published in June 2003

Localized states in discrete nonlinear Schrödinger equations.

scientific article published in January 1994

Localized vortices with a semi-integer charge in nonlinear dynamical lattices.

scientific article published on 18 December 2001

Mammalian stem cells reprogramming in response to terahertz radiation

scientific article

Modelling the magnetic signature of neuronal tissue

scientific article

Non-thermal effects of terahertz radiation on gene expression in mouse stem cells

scientific article

Nondissipative diffusion of lattice solitons out of thermal equilibrium.

scientific article published on 29 September 2005

Nonintegrable Schrodinger discrete breathers.

scientific article published in December 2004

Nonlinear Schrödinger equation with spatiotemporal perturbations.

scientific article published on 20 January 2010

Nonlinear optical response of MX chains in a one-band extended Peierls-Hubbard model

Nonlinearity from geometric interactions: a case example.

scientific article published on 8 October 2004

Nonlinearity in DNA and its relation to specific functions

scientific article published on 25 February 2009

On the existence of photoexcited breathers in conducting polymers

scholarly article in Physical Review B, vol. 70 no. 23, December 2004

Opening rates of DNA hairpins: experiment and model

scientific article

Optical absorption from polarons in a model of polyacetylene

article

Oscillating elastic defects: Competition and frustration

article

Perturbation theories of a discrete, integrable nonlinear Schrödinger equation.

scientific article published in April 1996

Photoexcited breathers in conjugated polyenes: an excited-state molecular dynamics study

scientific article

Possible Bose-condensate behavior in a quantum phase originating in a collective excitation in the chemically and optically doped Mott-Hubbard system UO2+x

scholarly article in Physical Review B, vol. 88 no. 11, September 2013

Possible Demonstration of a Polaronic Bose-Einstein(-Mott) Condensate in UO2(+x) by Ultrafast THz Spectroscopy and Microwave Dissipation

scientific article

Pre-melting dynamics of DNA and its relation to specific functions

scientific article published on 17 December 2008

Profiling the thermodynamic softness of adenoviral promoters

scientific article published on 4 April 2008

Promoter polymorphisms in two overlapping 6p25 genes implicate mitochondrial proteins in cognitive deficit in schizophrenia

scientific article published on 4 October 2011

Properties of the nonlinear Schrödinger equation on a lattice.

scientific article published in June 1991

Pseudogaps, dopants, and strong disorder in cuprate high-temperature superconductors

scholarly article by J C Phillips et al published 13 November 2003 in Reports on Progress in Physics

Random-phase-approximation approach to optical and magnetic excitations in the two-dimensional multiband Hubbard model

scientific article

Random-phase-approximation approach to phonon spectra in doped and undoped halogen-bridged transition-metal compounds

scientific article

Real time observation of non-linear coherent phonon dynamics in semiconducting single wall carbon nanotubes

Real-time observation of nonlinear coherent phonon dynamics in single-walled carbon nanotubes

Reduction of laser intensity scintillations in turbulent atmospheres using time averaging of a partially coherent beam

Refined empirical stability criterion for nonlinear Schrödinger solitons under spatiotemporal forcing

scientific article published on 25 August 2011

Rich example of geometrically induced nonlinearity: from rotobreathers and kinks to moving localized modes and resonant energy transfer.

scientific article published on 30 December 2004

Ring solitons on vortices.

scientific article published on 20 November 2001

Roughening and super-roughening in the ordered and random two-dimensional sine-gordon models

scientific article published in September 2000

Simplifying complexity

scientific article published in Nature

Soliton chaos in the nonlinear Schrödinger equation with spatially periodic perturbations.

scientific article published in September 1992

Soliton dynamics in optical fibers using the generalized traveling-wave method

scientific article published on 21 April 2016

Soliton stability criterion for generalized nonlinear Schrödinger equations

scientific article published on 9 January 2015

Solitons and superconductivity

scientific article published in Nature

Solitons and vortices in two-dimensional discrete nonlinear Schrödinger systems with spatially modulated nonlinearity ⬇️

scientific article published on 7 April 2015

Solitons in the Salerno model with competing nonlinearities.

scientific article published on 14 March 2006

Space-time pattern formation and conversion in the dc-driven, damped sine-Gordon equation.

scientific article published in March 1987

Specificity and heterogeneity of terahertz radiation effect on gene expression in mouse mesenchymal stem cells

scientific article

Speed-of-light pulses in the massless nonlinear Dirac equation with a potential

scientific article published on 22 November 2017

Spontaneous pattern formation in driven nonlinear lattices

Stabilizing a breather in the damped nonlinear Schrödinger equation driven by two frequencies.

scientific article published in February 1994

Static and dynamic phases for magnetic vortex matter with attractive and repulsive interactions

scientific article published in August 2013

Statics and dynamics of an inhomogeneously nonlinear lattice.

scientific article published on 5 September 2006

Strain-induced metal-insulator phase coexistence in perovskite manganites.

scientific article published in March 2004

Structure and fragmentation in colloidal artificial molecules and nuclei

scientific article published in January 2007

Superfluidity versus disorder in the discrete nonlinear Schrödinger equation.

scientific article published on 15 April 2002

Survival of quantum effects for observables after decoherence

Targeted transfer of solitons in continua and lattices.

scientific article published on 8 July 2002

The role of structural parameters in DNA cyclization

scientific article published on 4 February 2016

Theory of slow-light solitons

scientific article

Thermal diffusion of supersonic solitons in an anharmonic chain of atoms.

scientific article

Three-pulse photon-echo spectroscopy as a probe of the photoexcited electronic state manifold in coupled electron-phonon systems

scholarly article in Physical Review B, vol. 70 no. 16, October 2004

Toward a detailed description of the thermally induced dynamics of the core promoter

scientific article

Twisted localized modes.

scientific article published on 20 February 2001

Two-band model description of electroabsorption and third-harmonic generation in 1-D MX linear chains

Two-dimensional discrete breathers: construction, stability, and bifurcations

scientific article published in February 2000

Ultra-violet light induced changes in DNA dynamics may enhance TT-dimer recognition.

scientific article

Validity of the discrete nonlinear Schrödinger equation in the context of the fluorescence depolarization of a spin-boson system.

scientific article published in April 1996

Variational approach to studying solitary waves in the nonlinear Schrödinger equation with complex potentials ⬇️

scientific article published on 15 September 2016

Variational approach to the modulational instability.

scientific article published on 30 January 2004

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