List of works - Nina Jeliazkova

A data fusion pipeline for generating and enriching Adverse Outcome Pathway descriptions

scientific article published on 15 November 2017

A framework for grouping and read-across of nanomaterials- supporting innovation and risk assessment

scientific article

A look back at a pilot of the citation typing ontology ⬇️

scientific article published on 3 February 2023

A methodology for the automatic evaluation of data quality and completeness of nanomaterials for risk assessment purposes

scientific article published on 4 May 2022

AMBIT RESTful web services: an implementation of the OpenTox application programming interface

scientific article

AMBIT-SMARTS: Efficient Searching of Chemical Structures and Fragments

scientific article

Ambit-GCM: An Open-source Software Tool for Group Contribution Modelling

scientific article published on 17 January 2019

Ambit-SMIRKS: a software module for reaction representation, reaction search and structure transformation

scientific article published on 20 August 2018

Ambit-Tautomer: An Open Source Tool for Tautomer Generation

scientific article

Ambit‐SLN: an Open Source Software Library for Processing of Chemical Objects via SLN Linear Notation

scientific article

An evaluation of the implementation of the Cramer classification scheme in the Toxtree software

scientific article published in July 2008

Applicability Domain Dependent Predictive Uncertainty in QSAR Regressions

scientific article published on 7 October 2013

Approaches to Measure Chemical Similarity– a Review

scientific article (publication date: December 2003)

Assessing the similarity of nanoforms based on the biodegradation of organic surface treatment chemicals

CADASTER QSPR Models for Predictions of Melting and Boiling Points of Perfluorinated Chemicals

scientific article published on 17 March 2011

Chapter 17. Open Source Tools for Read-Across and Category Formation

Chemical landscape analysis with the OpenTox framework

scientific article published on January 2012

CoMPARA: Collaborative Modeling Project for Androgen Receptor Activity

scientific article published on 07 February 2020

Collaborative development of predictive toxicology applications

scientific article

Computational toxicology using the OpenTox application programming interface and Bioclipse

scientific article

Computer tools for Threshold of Toxicological Concern elucidation

Current status of methods for defining the applicability domain of (quantitative) structure-activity relationships. The report and recommendations of ECVAM Workshop 52

scientific article (publication date: April 2005)

ELIXIR and Toxicology: a community in development

scientific article published on 3 October 2023

Erratum to: ExCAPE-DB: an integrated large scale dataset facilitating Big Data analysis in chemogenomics

scientific article published on 14 June 2017

Erratum to: The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching

scientific article published on 20 September 2017

European Registry of Materials: global, unique identifiers for (undisclosed) nanomaterials

scientific article from 2022

Evaluation of CADASTER QSAR models for the aquatic toxicity of (benzo)triazoles and prioritisation by consensus prediction.

scientific article published in March 2013

ExCAPE-DB: an integrated large scale dataset facilitating Big Data analysis in chemogenomics

scientific article (publication date: 7 March 2017)

Food for thought ... A toxicology ontology roadmap

scientific article published on January 2012

From papers to RDF-based integration of physicochemical data and adverse outcome pathways for nanomaterials

scientific article published in May 2024

GLORY: Generator of the Structures of Likely Cytochrome P450 Metabolites Based on Predicted Sites of Metabolism

scientific article published on 12 June 2019

How can structural similarity analysis help in category formation?§

article

How can we justify grouping of nanoforms for hazard assessment? Concepts and tools to quantify similarity

Improvement of quantitative structure-activity relationship (QSAR) tools for predicting Ames mutagenicity: outcomes of the Ames/QSAR International Challenge Project

scientific article published on 01 March 2019

Improving reproducibility and reusability in the Journal of Cheminformatics

scientific article published on 30 June 2023

Integration among databases and data sets to support productive nanotechnology: challenges and recommendations ⬇️

journal article published in 2018

Interactive predictive toxicology with Bioclipse and OpenTox ⬇️

Journal of Cheminformatics, ORCID, and GitHub ⬇️

article in the Journal of Cheminformatics, 8 July 2019

METER.AC: Live Open Access Atmospheric Monitoring Data for Bulgaria with High Spatiotemporal Resolution

scientific article published in 2020

Making use of available and emerging data to predict the hazards of engineered nanomaterials by means of in silico tools: A critical review

scientific article published in January 2019

Non-linear methods in remotely sensed multispectral data classification

Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on

scientific article published in 2011

OpenTox predictive toxicology framework: toxicological ontology and semantic media wiki-based OpenToxipedia

scientific article

Perspectives from the NanoSafety Modelling Cluster on the validation criteria for (Q)SAR models used in nanotechnology

scientific article published on 21 September 2017

Possibilities to group nanomaterials across different substances – A case study on organic pigments

scientific article

Probabilistic assessment of biodegradability based on metabolic pathways: CATABOL System

scientific article (publication date: 2002)

QSAR applicabilty domain estimation by projection of the training set descriptor space: a review

scientific article (publication date: October 2005)

Reply to “FAIR chemical structure in the Journal of Cheminformatics”

Representing and describing nanomaterials in predictive nanoinformatics

scientific article published on 18 August 2022

Risk Governance of Emerging Technologies Demonstrated in Terms of its Applicability to Nanomaterials

scientific article published on 23 July 2020

Sharing dose response data and analysis across the SEURAT-1 cluster

Structural motifs modulating the carcinogenic risk of aromatic amines

article published in 2009

Summary of the Spring 2014 NSC Database Survey

report from 2014

The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching

scientific article

The QSPR-THESAURUS: the online platform of the CADASTER project

scientific article published on 01 March 2014

The ToxBank Data Warehouse: Supporting the Replacement of In Vivo Repeated Dose Systemic Toxicity Testing

scientific article (publication date: 2013)

The eNanoMapper database for nanomaterial safety information

scientific article

The eNanoMapper database for nanomaterial safety information

The first eNanoMapper prototype: A substance database to support safe-by-design ⬇️

scientific article (publication date: November 2014)

Towards FAIR nanosafety data

Toxicology ontology perspectives

scientific article

Toxmatch–a new software tool to aid in the development and evaluation of chemically similar groups

article

Toxmatch—A chemical classification and activity prediction tool based on similarity measures

scientific article published on 09 July 2008

UPerfsonarUI - a Standalone Graphical User Interface for Querying perfSONAR Services

Web tools for predictive toxicology model building ⬇️

scientific article (publication date: July 2012)

What is the role of cheminformatics in a pandemic?

scientific article published on 02 March 2021

XMetDB: an open access database for xenobiotic metabolism

scientific article

Your Spreadsheets Can Be FAIR: A Tool and FAIRification Workflow for the eNanoMapper Database

scientific article published on 24 September 2020

eNanoMapper – A database and ontology framework for design and safety assessment of nanomaterials

eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment

scientific article

List of works by Nina Jeliazkova

A data fusion pipeline for generating and enriching Adverse Outcome Pathway descriptions

A framework for grouping and read-across of nanomaterials- supporting innovation and risk assessment

A look back at a pilot of the citation typing ontology ⬇️

A methodology for the automatic evaluation of data quality and completeness of nanomaterials for risk assessment purposes

AMBIT RESTful web services: an implementation of the OpenTox application programming interface

AMBIT-SMARTS: Efficient Searching of Chemical Structures and Fragments

Ambit-GCM: An Open-source Software Tool for Group Contribution Modelling

Ambit-SMIRKS: a software module for reaction representation, reaction search and structure transformation

Ambit-Tautomer: An Open Source Tool for Tautomer Generation

Ambit‐SLN: an Open Source Software Library for Processing of Chemical Objects via SLN Linear Notation

An evaluation of the implementation of the Cramer classification scheme in the Toxtree software

Applicability Domain Dependent Predictive Uncertainty in QSAR Regressions

Approaches to Measure Chemical Similarity– a Review

Assessing the similarity of nanoforms based on the biodegradation of organic surface treatment chemicals

CADASTER QSPR Models for Predictions of Melting and Boiling Points of Perfluorinated Chemicals

Chapter 17. Open Source Tools for Read-Across and Category Formation

Chemical landscape analysis with the OpenTox framework

CoMPARA: Collaborative Modeling Project for Androgen Receptor Activity

Collaborative development of predictive toxicology applications

Computational toxicology using the OpenTox application programming interface and Bioclipse

Computer tools for Threshold of Toxicological Concern elucidation

Current status of methods for defining the applicability domain of (quantitative) structure-activity relationships. The report and recommendations of ECVAM Workshop 52

ELIXIR and Toxicology: a community in development

ELIXIR and Toxicology: a community in development

Erratum to: ExCAPE-DB: an integrated large scale dataset facilitating Big Data analysis in chemogenomics

Erratum to: The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching

European Registry of Materials: global, unique identifiers for (undisclosed) nanomaterials

Evaluation of CADASTER QSAR models for the aquatic toxicity of (benzo)triazoles and prioritisation by consensus prediction.

ExCAPE-DB: an integrated large scale dataset facilitating Big Data analysis in chemogenomics

Food for thought ... A toxicology ontology roadmap

From papers to RDF-based integration of physicochemical data and adverse outcome pathways for nanomaterials

GLORY: Generator of the Structures of Likely Cytochrome P450 Metabolites Based on Predicted Sites of Metabolism

How can structural similarity analysis help in category formation?§

How can we justify grouping of nanoforms for hazard assessment? Concepts and tools to quantify similarity

Improvement of quantitative structure-activity relationship (QSAR) tools for predicting Ames mutagenicity: outcomes of the Ames/QSAR International Challenge Project

Improving reproducibility and reusability in the Journal of Cheminformatics

Integration among databases and data sets to support productive nanotechnology: challenges and recommendations ⬇️

Interactive predictive toxicology with Bioclipse and OpenTox ⬇️

Journal of Cheminformatics, ORCID, and GitHub ⬇️

METER.AC: Live Open Access Atmospheric Monitoring Data for Bulgaria with High Spatiotemporal Resolution

Making use of available and emerging data to predict the hazards of engineered nanomaterials by means of in silico tools: A critical review

Non-linear methods in remotely sensed multispectral data classification

Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on

OpenTox predictive toxicology framework: toxicological ontology and semantic media wiki-based OpenToxipedia

Perspectives from the NanoSafety Modelling Cluster on the validation criteria for (Q)SAR models used in nanotechnology

Possibilities to group nanomaterials across different substances – A case study on organic pigments

Probabilistic assessment of biodegradability based on metabolic pathways: CATABOL System

QSAR applicabilty domain estimation by projection of the training set descriptor space: a review

Reply to “FAIR chemical structure in the Journal of Cheminformatics”

Representing and describing nanomaterials in predictive nanoinformatics

Risk Governance of Emerging Technologies Demonstrated in Terms of its Applicability to Nanomaterials

Sharing dose response data and analysis across the SEURAT-1 cluster

Structural motifs modulating the carcinogenic risk of aromatic amines

Summary of the Spring 2014 NSC Database Survey

The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching

The QSPR-THESAURUS: the online platform of the CADASTER project

The ToxBank Data Warehouse: Supporting the Replacement of In Vivo Repeated Dose Systemic Toxicity Testing

The eNanoMapper database for nanomaterial safety information

The eNanoMapper database for nanomaterial safety information

The first eNanoMapper prototype: A substance database to support safe-by-design ⬇️

Towards FAIR nanosafety data

Toxicology ontology perspectives

Toxmatch–a new software tool to aid in the development and evaluation of chemically similar groups

Toxmatch—A chemical classification and activity prediction tool based on similarity measures

UPerfsonarUI - a Standalone Graphical User Interface for Querying perfSONAR Services

Web tools for predictive toxicology model building ⬇️

What is the role of cheminformatics in a pandemic?

XMetDB: an open access database for xenobiotic metabolism

Your Spreadsheets Can Be FAIR: A Tool and FAIRification Workflow for the eNanoMapper Database

eNanoMapper – A database and ontology framework for design and safety assessment of nanomaterials

eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment