List of works by Janet Kelso

40,000-Year-Old Individual from Asia Provides Insight into Early Population Structure in Eurasia.

scientific article published on 11 October 2017

A Draft Sequence of the Neandertal Genome

scientific article

A Formal Ontology of Sequences

A Neanderthal Sodium Channel Increases Pain Sensitivity in Present-Day Humans

scientific article published on 15 July 2020

A Proposal for a Gene Functions Wiki

article

A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing

scientific article

A fourth Denisovan individual

scientific article published on 07 July 2017

A genetic analysis of the Gibraltar Neanderthals

scientific article published on 15 July 2019

A high-coverage Neandertal genome from Chagyrskaya Cave

scientific article published on 16 June 2020

A high-coverage Neandertal genome from Vindija Cave in Croatia.

scientific article published on 5 October 2017

A high-coverage genome sequence from an archaic Denisovan individual

scientific article

A platform for genomics in South Africa

article

A recent evolutionary change affects a regulatory element in the human FOXP2 gene

scientific article published on 28 November 2012

A splice variant of the human CCA-adding enzyme with modified activity

scientific article

A top-level ontology of functions and its application in the Open Biomedical Ontologies.

scientific article published on July 2006

ABAEnrichment: an R package to test for gene set expression enrichment in the adult and developing human brain

scientific article published on 26 June 2016

Addressing challenges in the production and analysis of illumina sequencing data

scientific article

Age estimates for hominin fossils and the onset of the Upper Palaeolithic at Denisova Cave

scientific article published in Nature

Allele-specific transcript isoforms in human

scientific article published in November 2004

An early modern human from Romania with a recent Neanderthal ancestor

scientific article

Analysis of human accelerated DNA regions using archaic hominin genomes

scientific article

Ancient Fennoscandian genomes reveal origin and spread of Siberian ancestry in Europe

scientific article published in Nature Communications

Ancient Fennoscandian genomes reveal origin and spread of Siberian ancestry in Europe

scientific article published on 22 March 2018

Ancient human genomes suggest three ancestral populations for present-day Europeans

scientific article

Ancient human genomes suggest three ancestral populations for present-day Europeans

Ancient humans and the origin of modern humans

scientific article published on 03 October 2014

Annotation of primate miRNAs by high throughput sequencing of small RNA libraries

scientific article

Application of eVOC: controlled vocabularies for unifying gene expression data

scientific article

Applying the functional abnormality ontology pattern to anatomical functions

scientific article

Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set

scientific article

BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology

scientific article (publication date: 6 May 2009)

Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia

scientific article published on 27 June 2022

Comparison of protein and mRNA expression evolution in humans and chimpanzees

scientific article

Computational challenges in the analysis of ancient DNA

scientific article (publication date: 2010)

DATABASE: A new forum for biological databases and curation

scientific article

DNA analysis of an early modern human from Tianyuan Cave, China

scientific article (publication date: 5 February 2013)

Deep proteome and transcriptome mapping of a human cancer cell line

scientific article

Denisovan DNA in Late Pleistocene sediments from Baishiya Karst Cave on the Tibetan Plateau

scientific article published on 01 October 2020

Denisovan ancestry and population history of early East Asians

scientific article published on 01 October 2020

Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals.

scientific article published on 17 March 2016

Expression signatures of early-stage and advanced medaka melanomas

scientific article published on 18 November 2017

Functional implications of Neandertal introgression in modern humans

scientific article published on 3 April 2017

Functionality of Intergenic Transcription: An Evolutionary Comparison

scientific article published in 2005

Functionality of intergenic transcription: an evolutionary comparison

scientific article

GFO-Bio: A biological core ontology

Genetic Adaptation and Neandertal Admixture Shaped the Immune System of Human Populations

scientific article

Genetic Evidence of Human Adaptation to a Cooked Diet

scientific article

Genetic history of an archaic hominin group from Denisova Cave in Siberia

scientific article

Genome sequence of a 45,000-year-old modern human from western Siberia

scientific article

Genomic basis for skin phenotype and cold adaptation in the extinct Steller’s sea cow

scientific article published on 04 February 2022

High-throughput DNA sequencing--concepts and limitations

scientific article published on June 2010

High-throughput sequencing of the melanoma genome

scientific article published on 22 November 2012

Human Stem Cell Resources Are an Inroad to Neandertal DNA Functions

scientific article published on 09 June 2020

Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion

scientific article

ISCB computational biology Wikipedia competition

scientific article published in 2013

Identification and analysis of genomic regions with large between-population differentiation in humans

scientific article published on January 2008

Identifying genes underlying skin pigmentation differences among human populations

scientific article

Immune Gene Diversity in Archaic and Present-day Humans

scientific article published on 01 January 2019

Immune gene diversity in archaic and present-day humans

article

Impact of ontology evolution on functional analyses

scientific article published on 06 September 2012

Impact of the presence of paralogs on sequence divergence in a set of mouse-human orthologs

scientific article published on September 2002

Improved base calling for the Illumina Genome Analyzer using machine learning strategies

scientific article published on 14 August 2009

InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia

scientific article

Initial Upper Palaeolithic humans in Europe had recent Neanderthal ancestry

scientific article published in 2021

Integration of text- and data-mining using ontologies successfully selects disease gene candidates

scientific article

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

scientific article

Introgression of Neandertal- and Denisovan-like Haplotypes Contributes to Adaptive Variation in Human Toll-like Receptors

scientific article

Introgression of Neandertal- and Denisovan-like Haplotypes Contributes to Adaptive Variation in Human Toll-like Receptors.

scientific article

Kiwi genome provides insights into evolution of a nocturnal lifestyle

scientific article

Limits of long-term selection against Neandertal introgression

article published in the Proceedings of the National Academy of Sciences of the United States of America

Lineage-Specific Changes in Biomarkers in Great Apes and Humans

scientific article

More than a decade of genetic research on the Denisovans

scientific article published on 18 September 2023

Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity

scientific article published on 13 December 2018

Neandertal Introgression Sheds Light on Modern Human Endocranial Globularity

Neandertal and Denisovan DNA from Pleistocene sediments.

scientific article

Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans

scientific article published on April 2014

Nuclear DNA from two early Neandertals reveals 80,000 years of genetic continuity in Europe.

scientific article published on 26 June 2019

Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins

scientific article

Nuclear and mitochondrial DNA sequences from two Denisovan individuals

scientific article (publication date: 16 November 2015)

OBML - Ontologies in Biomedicine and Life Sciences

scientific article (publication date: 9 August 2011)

Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne

scientific article

PatMaN: rapid alignment of short sequences to large databases

scientific article

Patterns of coding variation in the complete exomes of three Neandertals.

scientific article

Patterns of damage in genomic DNA sequences from a Neandertal

scientific article

Paving the future: finding suitable ISMB venues

scientific article

Pleistocene sediment DNA reveals hominin and faunal turnovers at Denisova Cave

scientific article published in 2021

Population transcriptomics of life-history variation in the genus Salmo

scientific article published on 3 June 2008

Positive selection on gene expression in the human brain

scientific article

RNA-seq analysis identifies different transcriptomic types and developmental trajectories of primary melanomas

scientific article published on 11 July 2018

Reconstructing the DNA Methylation Maps of the Neandertal and the Denisovan

scientific article published in Science

Reconstructing the genetic history of late Neanderthals

scientific article published in Nature

Reduced lipolysis in lipoma phenocopies lipid accumulation in obesity

scientific article published on 24 November 2020

Relations as patterns: bridging the gap between OBO and OWL

scientific article

Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies

scientific article

Reviewer-coerced citation: Case report, update on journal policy, and suggestions for future prevention

scientific article published on 01 September 2019

Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA.

scientific article

Statistical tests for associations between two directed acyclic graphs

scientific article

The Contribution of Neanderthals to Phenotypic Variation in Modern Humans

scientific article published in October 2017

The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms

scientific article

The Neandertal Progesterone Receptor

scientific article published in 2020

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

scientific article

The bonobo genome compared with the chimpanzee and human genomes

scientific article

The complete genome sequence of a Neanderthal from the Altai Mountains

scientific article

The contribution of exon-skipping events on chromosome 22 to protein coding diversity.

scientific article

The earliest Denisovans and their cultural adaptation

scientific article published in 2021

The earliest transcribed zygotic genes are short, newly evolved, and different across species

scientific article published on 16 January 2014

The evolutionary history of Neanderthal and Denisovan Y chromosomes

scientific article

The evolutionary history of human spindle genes includes back-and-forth gene flow with Neandertals

scientific article published in 2022

The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags

scientific article published on 30 October 2003

The genetic history of Ice Age Europe

scientific article

The genome of the offspring of a Neanderthal mother and a Denisovan father ⬇️

journal article from 'Nature' published in 2018

The genomic landscape of Neanderthal ancestry in present-day humans

scientific article

The ontology of biological sequences

scientific article

The transcriptional landscape of the mammalian genome

scientific article

Towards BioDBcore: a community-defined information specification for biological databases

scientific article

Towards BioDBcore: a community-defined information specification for biological databases

scientific article (publication date: 2011)

Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference

scientific article

Transcription factors are targeted by differentially expressed miRNAs in primates

scientific article

Transcriptional neoteny in the human brain

scientific article (publication date: 7 April 2009)

Transcriptome analysis of mouse stem cells and early embryos

scientific article

Unearthing Neanderthal population history using nuclear and mitochondrial DNA from cave sediments

scientific article published in 2021

admixr-R package for reproducible analyses using ADMIXTOOLS

scientific article published on 01 September 2019

deML: robust demultiplexing of Illumina sequences using a likelihood-based approach

scientific article published on 30 October 2014

eVOC: a controlled vocabulary for unifying gene expression data

scientific article

freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers

scientific article

leeHom: adaptor trimming and merging for Illumina sequencing reads

scientific article

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