List of works - Michael S. Barker

A total evidence approach to understanding phylogenetic relationships and ecological diversity in Selaginella subg. Tetragonostachys ⬇️

scientific article published on August 8, 2013

Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP)

scientific article published on 01 October 2019

An Adiantopsis Hybrid from Northeastern Argentina and Vicinity

scientific article

Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales

scientific article

Animal chromosome counts reveal a similar range of chromosome numbers but with less polyploidy in animals compared to flowering plants

scientific article published on 09 June 2021

Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts

scientific article published on 13 March 2020

Assessing the Performance of Ks Plots for Detecting Ancient Whole Genome Duplications

scientific article published in 2018

Between two fern genomes

scientific article

Chromosome-Scale Genome Assembly of <i>Gilia yorkii</i> Enables Genetic Mapping of Floral Traits in an Interspecies Cross

scientific article published in 2022

Comparative genomic and population genetic analyses indicate highly porous genomes and high levels of gene flow between divergent helianthus species

scientific article published on 09 May 2009

Complementing model species with model clades

scientific article published on 12 October 2023

Data access for the 1,000 Plants (1KP) project

scientific article

De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum

scientific article

Development of an ultra-dense genetic map of the sunflower genome based on single-feature polymorphisms

scientific article

Early genome duplications in conifers and other seed plants

scientific article

Establishing genomic tools and resources for Guizotia abyssinica (L.f.) Cass.-the development of a library of expressed sequence tags, microsatellite loci, and the sequencing of its chloroplast genome.

scientific article

EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics

scientific article

Evolution of the nuclear genome of ferns and lycophytes

Fern genomes elucidate land plant evolution and cyanobacterial symbioses

article

GOgetter: A pipeline for summarizing and visualizing GO slim annotations for plant genetic data

scientific article published in 2023

Gene co-inheritance and gene transfer

scientific article published on 01 March 2007

Genome size evolution in the diverse insect order Trichoptera

scientific article published in 2022

Genomic inferences of domestication events are corroborated by written records in Brassica rapa.

scientific article

Genomic inferences of domestication events are corroborated by written records inBrassica rapa

Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives

scientific article

Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression

scientific article

Impact of whole-genome duplication events on diversification rates in angiosperms

scientific article published on 01 March 2018

Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions

scientific article published on 01 February 2020

Inferring the Demographic History of Inbred Species from Genome-Wide SNP Frequency Data

scientific article published on 18 February 2020

Is hybridization driving the evolution of climatic niche in Alyssum montanum.

scientific article published on 14 April 2016

Maternal expression relaxes constraint on innovation of the anterior determinant, bicoid

scientific article

Methods for studying polyploid diversification and the dead end hypothesis: a reply to Soltis et al. (2014).

scientific article published on 4 December 2014

Molecular evolution across the Asteraceae: micro- and macroevolutionary processes

scientific article

Most Compositae (Asteraceae) are descendants of a paleohexaploid and all share a paleotetraploid ancestor with the Calyceraceae

scientific article

Multiple large-scale gene and genome duplications during the evolution of hexapods.

scientific article published on 19 April 2018

Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years

scientific article (publication date: November 2008)

NU-IN: Nucleotide evolution and input module for the EvolSimulator genome simulation platform

scientific article

On the relative abundance of autopolyploids and allopolyploids

scientific article published on 6 October 2015

Phylogeny and multiple independent whole-genome duplication events in the Brassicales

scientific article published on 24 August 2020

Phylotranscriptomic analysis of the origin and early diversification of land plants

scientific article

Pilot RNA‐seq data from 24 species of vascular plants at Harvard Forest

scientific article published on 15 February 2021

Polyploid plants have faster rates of multivariate niche differentiation than their diploid relatives

scientific article published on 21 October 2019

Probabilistic models of chromosome number evolution and the inference of polyploidy

scientific article published on 10 December 2009

Quantitative visualization of biological data in Google Earth using R2G2, an R CRAN package.

scientific article

Rarely successful polyploids and their legacy in plant genomes ⬇️

scientific article published on 03 April 2012

Recently formed polyploid plants diversify at lower rates

scientific article

Reply to Nakatani and McLysaght: Analyzing deep duplication events

scientific article published on 23 January 2019

SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses

scientific article

Sequencing and Analyzing the Transcriptomes of a Thousand Species Across the Tree of Life for Green Plants

scientific article published on 18 December 2019

TagSeq for gene expression in non-model plants: A pilot study at the Santa Rita Experimental Range NEON core site

scientific article published on 22 November 2020

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

scientific article

The Small Nuclear Genomes of Selaginella Are Associated with a Low Rate of Genome Size Evolution

scientific article published on 29 April 2016

The butterfly plant arms-race escalated by gene and genome duplications

scientific article

The frequency of polyploid speciation in vascular plants

scientific article

Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus

scientific article published on 28 June 2019

Transcriptome-derived evidence supports recent polyploidization and a major phylogeographic division in Trithuria submersa (Hydatellaceae, Nymphaeales).

scientific article published on 27 November 2015

Underwater CAM photosynthesis elucidated by Isoetes genome

scientific article published on 03 November 2021

List of works by Michael S. Barker

A total evidence approach to understanding phylogenetic relationships and ecological diversity in Selaginella subg. Tetragonostachys ⬇️

Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP)

An Adiantopsis Hybrid from Northeastern Argentina and Vicinity

Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales

Animal chromosome counts reveal a similar range of chromosome numbers but with less polyploidy in animals compared to flowering plants

Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts

Assessing the Performance of Ks Plots for Detecting Ancient Whole Genome Duplications

Between two fern genomes

Chromosome-Scale Genome Assembly of <i>Gilia yorkii</i> Enables Genetic Mapping of Floral Traits in an Interspecies Cross

Comparative genomic and population genetic analyses indicate highly porous genomes and high levels of gene flow between divergent helianthus species

Complementing model species with model clades

Data access for the 1,000 Plants (1KP) project

De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum

Development of an ultra-dense genetic map of the sunflower genome based on single-feature polymorphisms

Early genome duplications in conifers and other seed plants

Establishing genomic tools and resources for Guizotia abyssinica (L.f.) Cass.-the development of a library of expressed sequence tags, microsatellite loci, and the sequencing of its chloroplast genome.

EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics

Evolution of the nuclear genome of ferns and lycophytes

Fern genomes elucidate land plant evolution and cyanobacterial symbioses

GOgetter: A pipeline for summarizing and visualizing GO slim annotations for plant genetic data

Gene co-inheritance and gene transfer

Genome size evolution in the diverse insect order Trichoptera

Genomic inferences of domestication events are corroborated by written records in Brassica rapa.

Genomic inferences of domestication events are corroborated by written records inBrassica rapa

Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives

Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression

Impact of whole-genome duplication events on diversification rates in angiosperms

Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions

Inferring the Demographic History of Inbred Species from Genome-Wide SNP Frequency Data

Is hybridization driving the evolution of climatic niche in Alyssum montanum.

Maternal expression relaxes constraint on innovation of the anterior determinant, bicoid

Methods for studying polyploid diversification and the dead end hypothesis: a reply to Soltis et al. (2014).

Molecular evolution across the Asteraceae: micro- and macroevolutionary processes

Most Compositae (Asteraceae) are descendants of a paleohexaploid and all share a paleotetraploid ancestor with the Calyceraceae

Multiple large-scale gene and genome duplications during the evolution of hexapods.

Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years

NU-IN: Nucleotide evolution and input module for the EvolSimulator genome simulation platform

On the relative abundance of autopolyploids and allopolyploids

Phylogeny and multiple independent whole-genome duplication events in the Brassicales

Phylotranscriptomic analysis of the origin and early diversification of land plants

Pilot RNA‐seq data from 24 species of vascular plants at Harvard Forest

Polyploid plants have faster rates of multivariate niche differentiation than their diploid relatives

Probabilistic models of chromosome number evolution and the inference of polyploidy

Quantitative visualization of biological data in Google Earth using R2G2, an R CRAN package.

Rarely successful polyploids and their legacy in plant genomes ⬇️

Recently formed polyploid plants diversify at lower rates

Reply to Nakatani and McLysaght: Analyzing deep duplication events

SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses

Sequencing and Analyzing the Transcriptomes of a Thousand Species Across the Tree of Life for Green Plants

TagSeq for gene expression in non-model plants: A pilot study at the Santa Rita Experimental Range NEON core site

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

The Small Nuclear Genomes of Selaginella Are Associated with a Low Rate of Genome Size Evolution

The butterfly plant arms-race escalated by gene and genome duplications

The frequency of polyploid speciation in vascular plants

Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus

Transcriptome-derived evidence supports recent polyploidization and a major phylogeographic division in Trithuria submersa (Hydatellaceae, Nymphaeales).

Underwater CAM photosynthesis elucidated by Isoetes genome