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List of works by Fay-Wei Li

10KP: A phylodiverse genome sequencing plan.

scientific article

A first glimpse at genes important to the Azolla–Nostoc symbiosis

scholarly article

A guide to sequence your favorite plant genomes.

scientific article

A novel chloroplast gene reported for flagellate plants.

scientific article published in January 2018

A novel thylakoid-less isolate fills a billion-year gap in the evolution of Cyanobacteria

scientific article published in 2021

A step-by-step protocol for meiotic chromosome counts in flowering plants: A powerful and economical technique revisited

scientific article published on 23 April 2020

A worldwide phylogeny of Adiantum (Pteridaceae) reveals remarkable convergent evolution in leaf blade architecture

scholarly article by Layne Huiet et al published 1 June 2018 in Taxon

Admixture, evolution, and variation in reproductive isolation in the Boechera puberula clade

scientific article published on 25 April 2018

An Agrobacterium-mediated stable transformation technique for the hornwort model Anthoceros agrestis

publication published on 19 July 2021

An Exploration into Fern Genome Space.

scientific article published on 26 August 2015

An ancestral signalling pathway is conserved in intracellular symbioses-forming plant lineages

scientific article published on 02 March 2020

Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts

scientific article published on 13 March 2020

Asplenium pifongiae (Aspleniaceae: Polypodiales), a New Species from Taiwan

scientific article published in 2016

Balancing read length and sequencing depth: Optimizing Nanopore long‐read sequencing for monocots with an emphasis on the Liliales

scientific article published in 2023

Between two fern genomes

scientific article

Boechera microsatellite website: an online portal for species identification and determination of hybrid parentage

scientific article

Complete Genomes of Symbiotic Cyanobacteria Clarify the Evolution of Vanadium-Nitrogenase

scientific article published on 01 July 2019

Crowdfunding the Azolla fern genome project: a grassroots approach

scientific article

Dynamic plastid and mitochondrial genomes in Chaetopeltidales (Chlorophyceae) and characterization of a new chlorophyte taxon

scientific article published in 2022

Evolutionary aspects of plant photoreceptors

scientific article published on 3 February 2016

Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes

scholarly article

Fern genomes elucidate land plant evolution and cyanobacterial symbioses

article

First insights into fern matK phylogeny.

scientific article

Gaga, a New Fern Genus Segregated from Cheilanthes (Pteridaceae)

scientific article published in December 2012

Genes Translocated into the Plastid Inverted Repeat Show Decelerated Substitution Rates and Elevated GC Content

scientific article published on 10 July 2016

Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance. ⬇️

scientific article

Genome-wide organellar analyses from the hornwort Leiosporoceros dussii show low frequency of RNA editing

scientific article published in PLoS ONE

Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns

scientific article (publication date: 6 May 2014)

Hornworts: An Overlooked Window into Carbon-Concentrating Mechanisms

scientific article published on 7 March 2017

Identifying a mysterious aquatic fern gametophyte

scientific article published in 2009

Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N2 but may denitrify.

scientific article published on 30 October 2017

Large-scale phylogenomic analysis suggests three ancient superclades of the WUSCHEL-RELATED HOMEOBOX transcription factor family in plants

scientific article published on 11 October 2019

Maidenhair Ferns, Adiantum, are Indeed Monophyletic and Sister to Shoestring Ferns, Vittarioids (Pteridaceae)

scientific article published in 2016

Microbial-type terpene synthase genes occur widely in nonseed land plants, but not in seed plants

scientific article published on 10 October 2016

NCP activates chloroplast transcription by controlling phytochrome-dependent dual nuclear and plastidial switches.

scientific article published on 14 June 2019

Next-generation polyploid phylogenetics: rapid resolution of hybrid polyploid complexes using PacBio single-molecule sequencing.

scientific article published on 27 July 2016

On the evolutionary significance of horizontal gene transfers in plants

scientific article published on 26 July 2019

Order-level fern plastome phylogenomics: new insights from Hymenophyllales

Order-level fern plastome phylogenomics: new insights from Hymenophyllales

scientific article published in 2018

Organelle Genome Inheritance in Deparia Ferns (Athyriaceae, Aspleniineae, Polypodiales).

scientific article published on 13 April 2018

Organellomic data sets confirm a cryptic consensus on (unrooted) land-plant relationships and provide new insights into bryophyte molecular evolution

scientific article published on 08 December 2019

Phaeoceros perpusillus var. scabrellus (Notothyladaceae, Anthocerotophyta), a new taxon from northern Thailand

scientific article published in 2024

Phylogenetic Methods to Study Light Signaling

scientific article published on 01 January 2019

Phytochrome diversity in green plants and the origin of canonical plant phytochromes

scientific article published on 28 July 2015

Plant science decadal vision 2020-2030: Reimagining the potential of plants for a healthy and sustainable future

scientific article published on 01 August 2020

Reconstructing trait evolution in plant evo-devo studies

scientific article published on 01 November 2019

Scaling relationships of leaf vein and areole traits versus leaf size for nine Magnoliaceae species differing in venation density

scientific article published on 26 April 2022

Searching for Diamonds in the Apomictic Rough: A Case Study Involving Boechera lignifera (Brassicaceae)

scientific article published in 2016

Step-by-step protocol for the isolation and transient transformation of hornwort protoplasts

scientific article published on 11 February 2022

Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis.

scientific article published on 21 October 2016

The Hornworts: Morphology, evolution and development

scientific article published on 13 August 2020

The Hybrid Origin of Adiantum meishanianum (Pteridaceae): A Rare and Endemic Species in Taiwan

scientific article published in 2014

The P. patens chromosome-scale assembly reveals moss genome structure and evolution. ⬇️

scientific article

The evolutionary history of ferns inferred from 25 low-copy nuclear genes

scientific article

The origin and evolution of phototropins

scientific article published on 12 August 2015

The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2.

scientific article published on 20 January 2017

Tissue-direct PCR, a rapid and extraction-free method for barcoding of ferns.

scientific article published on 17 July 2009

Transcriptome-mining for single-copy nuclear markers in ferns

scientific article

Underwater CAM photosynthesis elucidated by Isoetes genome

scientific article published on 03 November 2021

rbcL and matK earn two thumbs up as the core DNA barcode for ferns

scientific article published in 2011

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