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List of works by Suhua Shi

A Natural Hybrid Between Ligularia paradoxa and L. duciformis (Asteraceae, Senecioneae) From Yunnan, China1

scientific article

A case for conservation

scientific article published in March 2004

Adaptation to a new environment with pre‐adaptive genomic features – Evidence from woody plants colonizing the land–sea interface

scientific article published on 07 July 2022

Adverse interactions between micro-RNAs and target genes from different species

scientific article

Ancient Geographical Barriers Drive Differentiation among Sonneratia caseolaris Populations and Recent Divergence from S. lanceolata

scientific article (publication date: 2016)

Applications of Multiple Nuclear Genes to the Molecular Phylogeny, Population Genetics and Hybrid Identification in the Mangrove Genus Rhizophora

scientific article

Can genomic data alone tell us whether speciation happened with gene flow?

scientific article

Coevolution in action: disruptive selection on egg colour in an avian brood parasite and its host

scientific article

Comparative Analysis of Transcriptomes in Rhizophoraceae Provides Insights into the Origin and Adaptive Evolution of Mangrove Plants in Intertidal Environments

scientific article

Comparative transcriptome analyses of a mangrove tree Sonneratia caseolaris and its non-mangrove relatives, Trapa bispinosa and Duabanga grandiflora

scientific article published on 31 October 2016

Comparisons of site- and haplotype-frequency methods for detecting positive selection

scientific article published on 21 April 2007

Compound tests for the detection of hitchhiking under positive selection

scientific article published on 8 June 2007

Conservation genetics of Lumnitzera littorea (Combretaceae), an endangered mangrove, from the Indo-West Pacific

article

Construction of a SSH library of Aegiceras corniculatum under salt stress and expression analysis of four transcripts

article published in 2005

Convergent adaptation of the genomes of woody plants at the land-sea interface

scientific article published on 20 February 2020

Convergent adaptive evolution in marginal environments: unloading transposable elements as a common strategy among mangrove genomes

scientific article published on 27 September 2017

DNA barcoding reveals insect diversity in the mangrove ecosystems of the Hainan Island, China

article

De Novo Assembly of Coding Sequences of the Mangrove Palm (Nypa fruticans) Using RNA-Seq and Discovery of Whole-Genome Duplications in the Ancestor of Palms

scientific article

De novo assembly of the transcriptome of Aegiceras corniculatum, a mangrove species in the Indo-West Pacific region

scientific article published on 10 June 2016

De novo assembly of the transcriptomes of two yellow mangroves, Ceriops tagal and C. zippeliana, and one of their terrestrial relatives, Pellacalyx yunnanensis.

scientific article published on 18 April 2015

Detecting evolutionary rate heterogeneity among mangroves and their close terrestrial relatives

scholarly article by Yang Zhong et al published May 2002 in Ecology Letters

Development and characterization of 18 EST–SSR markers in Sonneratia caseolaris ⬇️

scientific article published on April 4, 2011

Development and characterization of EST-SSR markers in the invasive weed Mikania micrantha (Asteraceae).

scientific article published on 24 November 2010

Development and characterization of microsatellite loci for smooth cordgrass, Spartina alterniflora (Poaceae) ⬇️

scientific article

Development and characterization of microsatellite markers for Melastoma dodecandrum (Melastomataceae).

scientific article

Development of microsatellite markers for Carallia brachiata (Rhizophoraceae)

scientific article published on 9 March 2015

Differentiated population structure of a genetically depauperate mangrove species Ceriops tagal revealed by both Sanger and deep sequencing

scholarly article by Yelin Huang et al published August 2012 in Aquatic Botany

Differing phylogeographic patterns within the Indo-West Pacific mangrove genus Xylocarpus (Meliaceae)

scholarly article by Zixiao Guo et al published 27 December 2017 in Journal of Biogeography

Effects of Pleistocene sea-level fluctuations on mangrove population dynamics: a lesson from Sonneratia alba

scientific article

Electroacupuncture Treatment Improves Learning-Memory Ability and Brain Glucose Metabolism in a Mouse Model of Alzheimer's Disease: Using Morris Water Maze and Micro-PET.

scientific article

Establishing community-wide DNA barcode references for conserving mangrove forests in China

scientific article published on 04 December 2021

Estimating DNA polymorphism from next generation sequencing data with high error rate by dual sequencing applications

scientific article

Evidence for gene length as a determinant of gene coexpression in protein complexes

scientific article published on 20 July 2009

Evolution of coastal forests based on a full set of mangrove genomes

scientific article published in 2022

Evolution of woody plants to the land‐sea interface – The atypical genomic features of mangroves with atypical phenotypic adaptation

scientific article published on 30 June 2022

Expression Variations of miRNAs and mRNAs in Rice (Oryza sativa)

scientific article

Extremely low genetic diversity across mangrove taxa reflects past sea level changes and hints at poor future responses.

scientific article published on 31 October 2017

Extremely low genetic diversity and extensive genetic admixture at the northern range margins of Bombax ceiba

scientific article published in 2015

Flooding greatly affects the diversity of arbuscular mycorrhizal fungi communities in the roots of wetland plants.

scientific article

Genetic discontinuities in a dominant mangrove Rhizophora apiculata (Rhizophoraceae) in the Indo-Malesian region

scholarly article by Zixiao Guo et al published 20 April 2016 in Journal of Biogeography

Genetic diversity in Primula obconica (Primulaceae) from central and south-west China as revealed by ISSR markers

scientific article

Genetic diversity of Aegiceras corniculatum (Myrsinaceae) revealed by amplified fragment length polymorphism (AFLP)

Genetic diversity of Hibiscus tiliaceus (Malvaceae) in China assessed using AFLP markers

scientific article published on September 2003

Genetic diversity of the endangered Chinese endemic herb Primulina tabacum (Gesneriaceae) revealed by amplified fragment length polymorphism (AFLP).

scientific article published in May 2006

Genetic variation in central and peripheral populations of Excoecaria agallocha from Indo-West Pacific

Genome-Wide Convergence during Evolution of Mangroves from Woody Plants.

scientific article

Genomic Convergence in the Adaptation to Extreme Environments

scientific article published on 29 October 2020

Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication

scientific article

Habitat differentiation between estuarine and inland Hibiscus tiliaceus L. (Malvaceae) as revealed by retrotransposon-based SSAP marker

scientific article published in 2011

High-throughput S-SAP by fluorescent multiplex PCR and capillary electrophoresis in plants.

scientific article published in October 2004

Hybridization with natives augments the threats of introduced species in Sonneratia mangroves

scientific article published on 17 October 2019

Identification and characterization of evolutionarily conserved alternative splicing events in a mangrove genus Sonneratia.

scientific article

Independent losses of function in a polyphenol oxidase in rice: differentiation in grain discoloration between subspecies and the role of positive selection under domestication

scientific article published on 25 November 2008

JMJ24 binds to RDR2 and is required for the basal level transcription of silenced loci in Arabidopsis

scientific article

MapNext: a software tool for spliced and unspliced alignments and SNP detection of short sequence reads

scientific article

MapView: visualization of short reads alignment on a desktop computer

scientific article published on 15 April 2009

Molecular adaptation to salinity fluctuation in tropical intertidal environments of a mangrove tree Sonneratia alba

scientific article published on 22 April 2020

Molecular confirmation of natural hybridization between Lumnitzera racemosa and Lumnitzera littorea

Molecular criteria for determining new hybrid species--an application to the Sonneratia hybrids

scientific article

Molecular evidence for natural hybridization in the mangrove fern genus Acrostichum

scientific article

Molecular evidence for natural intergeneric hybridization between Liquidambar and Altingia

article

Molecular genetic variation in Chinese populations of three subspecies of Hippophae rhamnoides

scientific article

Molecular phylogenetic analysis of mangroves: independent evolutionary origins of vivipary and salt secretion

scientific article published in January 2005

PCR-mediated recombination of the amplification products of the Hibiscus tiliaceus cytosolic glyceraldehyde-3-phosphate dehydrogenase gene

scientific article published in March 2007

Packera serpenticola (Asteraceae; Senecioneae), a New Species from North Carolina, U. S. A.

scientific article

Phylogenetic relationships of Combretoideae (Combretaceae) inferred from plastid, nuclear gene and spacer sequences

scientific article

Phylogenetic relationships of the Rhizophoraceae in China based on sequences of the chloroplast gene matK and the internal transcribed spacer regions of nuclear ribosomal DNA and combined data set

article

Phylogeny and infrageneric classification ofSymplocos(Symplocaceae) inferred from DNA sequence data ⬇️

scientific article published on November 1, 2004

Population Genetics in Nonmodel Organisms: II. Natural Selection in Marginal Habitats Revealed by Deep Sequencing on Dual Platforms

article

Population genetic structure and conservation implications of Ceriops decandra in Malay Peninsula and North Australia

article

Population genetic structure of three tree species in the mangrove genus Ceriops (Rhizophoraceae) from the Indo West Pacific

scientific article published on 10 August 2007

Population genetics of speciation in nonmodel organisms: I. Ancestral polymorphism in mangroves

scientific article published on 28 September 2007

Prevalence of cryptic species in morphologically uniform taxa - Fast speciation and evolutionary radiation in Asian frogs

article

Pronounced genetic differentiation and recent secondary contact in the mangrove tree Lumnitzera racemosa revealed by population genomic analyses

scientific article published on 06 July 2016

Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data

scientific article

Re-Evaluation of Phylogenetic Relationships among Species of the Mangrove Genus Avicennia from Indo-West Pacific Based on Multilocus Analyses

scientific article

Recent advances in the study of ecological speciation

scientific article published in 2015

Sharing and reporting benefits from biodiversity research

scientific article published on 06 November 2020

Small RNA transcriptomes of mangroves evolve adaptively in extreme environments

scientific article

Speciation with gene flow via cycles of isolation and migration: insights from multiple mangrove taxa

scientific article published on 24 July 2018

Statistical tests for detecting positive selection by utilizing high-frequency variants

scientific article

Testing a hypothesis of unidirectional hybridization in plants: observations on Sonneratia, Bruguiera and Ligularia

scientific article (publication date: 16 May 2008)

Testing hypotheses on the rate of molecular evolution in relation to gene expression using microRNAs ⬇️

scientific article published on September 12, 2011

Testing relative evolutionary rates and estimating divergence times among six genera of Rhizophoraceae using cpDNA and nrDNA sequences

article

The State of the World's Mangrove Forests: Past, Present, and Future

scientific article

The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication

scientific article

The emergence of the hyperinvasive vine, Mikania micrantha (Asteraceae), via admixture and founder events inferred from population transcriptomics

scientific article published on 30 March 2017

The global significance of biodiversity science in China: an overview

scientific article published on 19 February 2021

The global significance of biodiversity science in China: an overview

scientific article published on 23 February 2021

The integration and application of genomic information in mangrove conservation

scientific article published on 25 September 2018

The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole genome sequencing

scientific article published on 05 June 2017

Transcriptional homeostasis of a mangrove species, Ceriops tagal, in saline environments, as revealed by microarray analysis

scientific article

Transcriptome analyses provide insights into the phylogeny and adaptive evolution of the mangrove fern genus Acrostichum

scientific article

Transcriptome analysis of the Holly mangrove Acanthus ilicifolius and its terrestrial relative, Acanthus leucostachyus, provides insights into adaptation to intertidal zones

scientific article

Transcriptome sequencing of a highly salt tolerant mangrove species Sonneratia alba using Illumina platform ⬇️

scientific article published on April 19, 2011

Two evolutionary histories in the genome of rice: the roles of domestication genes

scientific article

miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments

scientific article

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