List of works - Ulisses Braga Neto

A fast Branch-and-Bound algorithm for U-curve feature selection ⬇️

scholarly article

A systematic model of the LC-MS proteomics pipeline

scientific article

Alternative Complement Pathway Deregulation Is Correlated with Dengue Severity

scientific article (publication date: 26 August 2009)

Analysis and modeling of time-course gene-expression profiles from nanomaterial-exposed primary human epidermal keratinocytes

scientific article

Applications of signal processing techniques to bioinformatics, genomics, and proteomics

scientific article published on 23 April 2009

BPDA - A Bayesian peptide detection algorithm for mass spectrometry ⬇️

scientific article published on September 29, 2010

BPDA2d—a 2D global optimization-based Bayesian peptide detection algorithm for liquid chromatograph–mass spectrometry ⬇️

scientific article published on December 6, 2011

Bayesian ABC-MCMC Classification of Liquid Chromatography-Mass Spectrometry Data

scientific article

Bayesian Control of Large MDPs with Unknown Dynamics in Data-Poor Environments ⬇️

article

Bayesian estimation of the discrete coefficient of determination

scientific article

Bolstered error estimation

BoolFilter: an R package for estimation and identification of partially-observed Boolean dynamical systems

scientific article published on 25 November 2017

Classification and error estimation for discrete data

scientific article

Classification of Single-cell Gene Expression Trajectories from Incomplete and Noisy Data

scientific article published on 16 October 2017

Classification of State Trajectories in Gene Regulatory Networks

scientific article published on 11 October 2016

Complement factor H gene (CFH) polymorphisms C-257T, G257A and haplotypes are associated with protection against severe dengue phenotype, possible related with high CFH expression

scientific article published on 06 June 2013

Confidence intervals for the true classification error conditioned on the estimated error

scientific article published in December 2006

Cross-validation under separate sampling: strong bias and how to correct it

scientific article

Description of a prospective 17DD yellow fever vaccine cohort in Recife, Brazil

scientific article

Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens

scientific article

Exact Performance of CoD Estimators in Discrete Prediction

From functional genomics to functional immunomics: new challenges, old problems, big rewards

scientific article

Gene Expression Profiling during Early Acute Febrile Stage of Dengue Infection Can Predict the Disease Outcome

scientific article

Genomic Signal Processing

scholarly article by Ulisses Braga Neto et al published 4 January 2011 in EURASIP Journal on Advances in Signal Processing

Grayscale level connectivity: theory and applications

scientific article published in December 2004

High-dimensional bolstered error estimation

scientific article

Impact of missing value imputation on classification for DNA microarray gene expression data--a model-based study

scientific article

Intrinsically Bayesian robust classifier for single-cell gene expression trajectories in gene regulatory networks.

scientific article published on 21 March 2018

Intrinsically Multivariate Predictive Genes

article

Is cross-validation better than resubstitution for ranking genes?

scientific article published in January 2004

Is cross-validation valid for small-sample microarray classification?

scientific article published in February 2004

MBL2 gene polymorphisms protect against development of thrombocytopenia associated with severe dengue phenotype

scientific article

Modeling and systematic analysis of biomarker validation using selected reaction monitoring

scientific article

Object-based image analysis using multiscale connectivity

scientific article published in June 2005

Proceedings of the 2009 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. Introduction

scientific article

Proceedings of the 2011 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. Introduction

scientific article

Reliable Classifier to Differentiate Primary and Secondary Acute Dengue Infection Based on IgG ELISA

scientific article

Sequential Experimental Design for Optimal Structural Intervention in Gene Regulatory Networks Based on the Mean Objective Cost of Uncertainty

article

Statistical Detection of Intrinsically Multivariate Predictive Genes

scientific article published on July 2015

Statistical detection of boolean regulatory relationships

scientific article published in September 2013

Superior feature-set ranking for small samples using bolstered error estimation

scientific article

T-cell memory responses elicited by yellow fever vaccine are targeted to overlapping epitopes containing multiple HLA-I and -II binding motifs

scientific article

The Illusion of Distribution-Free Small-Sample Classification in Genomics ⬇️

scientific article published on August 1, 2011

Topology correction in brain cortex segmentation using a multiscale, graph-based algorithm

scientific article published on February 2002

Unbiased bootstrap error estimation for linear discriminant analysis

scientific article published on 03 October 2014

List of works by Ulisses Braga Neto

A fast Branch-and-Bound algorithm for U-curve feature selection ⬇️

A systematic model of the LC-MS proteomics pipeline

Alternative Complement Pathway Deregulation Is Correlated with Dengue Severity

Analysis and modeling of time-course gene-expression profiles from nanomaterial-exposed primary human epidermal keratinocytes

Applications of signal processing techniques to bioinformatics, genomics, and proteomics

BPDA - A Bayesian peptide detection algorithm for mass spectrometry ⬇️

BPDA2d—a 2D global optimization-based Bayesian peptide detection algorithm for liquid chromatograph–mass spectrometry ⬇️

Bayesian ABC-MCMC Classification of Liquid Chromatography-Mass Spectrometry Data

Bayesian Control of Large MDPs with Unknown Dynamics in Data-Poor Environments ⬇️

Bayesian estimation of the discrete coefficient of determination

Bolstered error estimation

BoolFilter: an R package for estimation and identification of partially-observed Boolean dynamical systems

Classification and error estimation for discrete data

Classification of Single-cell Gene Expression Trajectories from Incomplete and Noisy Data

Classification of State Trajectories in Gene Regulatory Networks

Complement factor H gene (CFH) polymorphisms C-257T, G257A and haplotypes are associated with protection against severe dengue phenotype, possible related with high CFH expression

Confidence intervals for the true classification error conditioned on the estimated error

Cross-validation under separate sampling: strong bias and how to correct it

Description of a prospective 17DD yellow fever vaccine cohort in Recife, Brazil

Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens

Exact Performance of CoD Estimators in Discrete Prediction

From functional genomics to functional immunomics: new challenges, old problems, big rewards

Gene Expression Profiling during Early Acute Febrile Stage of Dengue Infection Can Predict the Disease Outcome

Genomic Signal Processing

Grayscale level connectivity: theory and applications

High-dimensional bolstered error estimation

Impact of missing value imputation on classification for DNA microarray gene expression data--a model-based study

Intrinsically Bayesian robust classifier for single-cell gene expression trajectories in gene regulatory networks.

Intrinsically Multivariate Predictive Genes

Is cross-validation better than resubstitution for ranking genes?

Is cross-validation valid for small-sample microarray classification?

MBL2 gene polymorphisms protect against development of thrombocytopenia associated with severe dengue phenotype

Modeling and systematic analysis of biomarker validation using selected reaction monitoring

Object-based image analysis using multiscale connectivity

Proceedings of the 2009 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. Introduction

Proceedings of the 2011 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. Introduction

Reliable Classifier to Differentiate Primary and Secondary Acute Dengue Infection Based on IgG ELISA

Sequential Experimental Design for Optimal Structural Intervention in Gene Regulatory Networks Based on the Mean Objective Cost of Uncertainty

Statistical Detection of Intrinsically Multivariate Predictive Genes

Statistical detection of boolean regulatory relationships

Superior feature-set ranking for small samples using bolstered error estimation

T-cell memory responses elicited by yellow fever vaccine are targeted to overlapping epitopes containing multiple HLA-I and -II binding motifs

The Illusion of Distribution-Free Small-Sample Classification in Genomics ⬇️

Topology correction in brain cortex segmentation using a multiscale, graph-based algorithm

Unbiased bootstrap error estimation for linear discriminant analysis