List of works - Dipankar Chatterji

A Histidine Aspartate Ionic Lock Gates the Iron Passage in Miniferritins from Mycobacterium smegmatis

scientific article

A comparative kinetic and thermodynamic perspective of the σ-competition model in Escherichia coli

scientific article

A full-length bifunctional protein involved in c-di-GMP turnover is required for long-term survival under nutrient starvation in Mycobacterium smegmatis

scientific article published on 16 February 2012

A useful method for the synthesis of 8 azido-guanosine tri- and tetraphosphate: important substrates for many enzymatic reactions ⬇️

scientific article published on 01 August 1997

Bimodal protection of DNA by Mycobacterium smegmatis DNA-binding protein from stationary phase cells.

scientific article published on 3 December 2002

Both regions 4.1 and 4.2 of E. coli σ70 are together required for binding to bacteriophage T4 AsiA in vivo

article

Bovine seminalplasmin [corrected] is a DNA unwinding protein.

scientific article

Co-evolution of RNA polymerase with RbpA in the phylum Actinobacteria

scientific article published on 26 May 2012

Conformational and ion-binding properties of cyclolinopeptide A isolated from linseed

Crystallization and preliminary X-ray diffraction analysis of Mycobacterium smegmatis Dps

scientific article published on 27 November 2003

Cyclic di-GMP: a second messenger required for long-term survival, but not for biofilm formation, in Mycobacterium smegmatis

scientific article published in October 2008

Cyclic di-GMP: a second messenger required for long-term survival, but not for biofilm formation, in Mycobacterium smegmatis

scientific article published on 01 March 2011

DNA intervention in transcriptional activation ⬇️

scientific article published on August 3, 1992

DNA-Dependent RNA Polymerase II from Candida Species Is a Multiple Zinc-Containing Metalloenzyme

DNA-dependent RNA polymerase II from Candida species is a multiple zinc-containing metalloenzyme

scientific article published on 01 August 1999

Deletion of the Gene rpoZ, Encoding the Subunit of RNA Polymerase, in Mycobacterium smegmatis Results in Fragmentation of the ' Subunit in the Enzyme Assembly

article

Deletion of the gene rpoZ, encoding the omega subunit of RNA polymerase, in Mycobacterium smegmatis results in fragmentation of the beta' subunit in the enzyme assembly

scientific article

Deletion of the rpoZ gene, encoding the omega subunit of RNA polymerase, results in pleiotropic surface-related phenotypes in Mycobacterium smegmatis.

scientific article

Detection of putative Zn(II) binding sites within Escherichia coli RNA polymerase: inconsistency between sequence-based prediction and 65 Zn blotting

scientific article published on 01 July 1999

Differential inhibition of abortive transcription initiation at different promoters catalysed by E. coli RNA polymerase. Effect of rifampicin on purine or pyramidine-initiated phosphodiester synthesis.

scientific article published in July 1992

Differential mechanisms of binding of anti-sigma factors Escherichia coli Rsd and bacteriophage T4 AsiA to E. coli RNA polymerase lead to diverse physiological consequences

scientific article published on 21 March 2008

Direct Observation of Large Temperature Fluctuations during DNA Thermal Denaturation

scientific article published in Physical Review Letters

Escherichia coli RNA polymerase subunit omega and its N-terminal domain bind full-length beta' to facilitate incorporation into the alpha2beta subassembly

scientific article

Estimation of Förster's distance between two ends of Dps protein from mycobacteria: distance heterogeneity as a function of oligomerization and DNA binding

scientific article published on 02 March 2007

Evaluation of the role of sigma B in Mycobacterium smegmatis

scientific article published on 21 October 2005

Evidence for a ppGpp-binding site on Escherichia coli RNA polymerase: proximity relationship with the rifampicin-binding domain

article

Evidence for a pyrimidine-nucleotide-specific initiation site (the i site) on Escherichia coli RNA polymerase. Proximity relationship with the inhibitor binding domain.

scientific article

Fluorescence spectroscopy analysis of active and regulatory sites of RNA polymerase.

scientific article published in January 1996

Formation of a DNA layer on Langmuir-Blodgett films and its enzymatic digestion

scientific article published in July 2004

Functional complementation between mutations at two distant positions in Escherichia coli RNA polymerase as revealed by second-site suppression.

scientific article

Glycopeptidolipids: immuno-modulators in greasy mycobacterial cell envelope

scientific article published on 18 January 2012

GroEL is involved in activation of Escherichia coli RNA polymerase devoid of the omega subunit in vivo

scientific article

Guanosine tetraphosphate-induced dissociation of open complexes at the Escherichia coli ribosomal protein promoters rplJ and rpsA P1: nanosecond depolarization spectroscopic studies

scientific article published on October 1998

High intracellular level of guanosine tetraphosphate in Mycobacterium smegmatis changes the morphology of the bacterium

scientific article published on July 2000

Hybridization and Immobilization of Long ds-DNAs on Polystyrene Microspheres

Hyperglycosylation of glycopeptidolipid of Mycobacterium smegmatis under nutrient starvation: structural studies

scientific article published in July 2005

Identification and characterization of rel promoter element of Mycobacterium tuberculosis

scientific article published in May 2005

Identification and characterization of starvation induced msdgc-1 promoter involved in the c-di-GMP turnover

scientific article published on 7 August 2013

Identification and characterization of the dps promoter of Mycobacterium smegmatis: promoter recognition by stress-specific extracytoplasmic function sigma factors sigmaH and sigmaF.

scientific article published on 5 October 2007

Identification, activity and disulfide connectivity of C-di-GMP regulating proteins in Mycobacterium tuberculosis

scientific article

Identifying N60D mutation in ω subunit of Escherichia coli RNA polymerase by bottom-up proteomic approach

scientific article published on 20 August 2010

Inactivation of the bacterial RNA polymerase due to acquisition of secondary structure by the ω subunit

scientific article published on 10 July 2013

Inhibition of mycobacterial growth by plumbagin derivatives

scientific article published on 4 May 2010

Inter-subunit recognition and manifestation of segmental mobility in Escherichia coli RNA polymerase: a case study with omega-beta' interaction

scientific article published in March 2003

Interaction of bacteriophage T4 AsiA protein with Escherichia coli sigma70 and its variant.

scientific article

Interaction of bovine seminalplasmin with Escherichia coli RNA polymerase in the presence of rifampicin

scientific article published on 01 March 1985

Langmuir monolayer as a tool toward visualization of a specific DNA-protein complex

scientific article published in November 2005

MS_RHII-RSD, a dual-function RNase HII-(p)ppGpp synthetase from Mycobacterium smegmatis

scientific article published on 25 May 2012

Mechanism of initiation of transcription by Escherichia coli RNA polymerase on supercoiled template.

scientific article

Molecular dissection of the mycobacterial stringent response protein Rel

scientific article

Molecular insights into the mechanism of phenotypic tolerance to rifampicin conferred on mycobacterial RNA polymerase by MsRbpA.

scientific article

Molecular mechanism of in vitro oligomerization of Dps from Mycobacterium smegmatis: mutations of the residues identified by "interface cluster" analysis.

scientific article

Mycobacterial stress regulation: The Dps â twin sisterâ defense mechanism and structure-function relationship

scientific article published on 01 January 2010

Nonspecific Interaction between DNA and Protein allows for Cooperativity: A Case Study with Mycobacterium DNA Binding Protein

scientific article published on 16 December 2011

Promoter search and strength of a promoter: two important means for regulation of gene expression inEscherichia coli

article

Proteomics and mass spectrometric studies reveal planktonic growth of Mycobacterium smegmatis in biofilm cultures in the absence of rpoZ.

scientific article

RelZ-Mediated Stress Response in Mycobacterium smegmatis: pGpp Synthesis and Its Regulation

scientific article published on 02 January 2020

Resonance energy transfer study on the proximity relationship between the GTP binding site and the rifampicin binding site of Escherichia coli RNA polymerase

scientific article published in January 1990

Retrobiosynthetic approach delineates the biosynthetic pathway and the structure of the acyl chain of mycobacterial glycopeptidolipids

scientific article

Revisiting the stringent response, ppGpp and starvation signaling.

scientific article

Role of N and C-terminal tails in DNA binding and assembly in Dps: structural studies of Mycobacterium smegmatis Dps deletion mutants

scientific article

Role of an RNA polymerase interacting protein, MsRbpA, from Mycobacterium smegmatis in phenotypic tolerance to rifampicin

scientific journal article

Sequence specific interaction between promoter DNA and Escherichia coli RNA polymerase: comparative thermodynamic analysis with one immobilized partner

scientific article published in November 2009

Sequential Assembly of an Active RNA Polymerase Molecule at the Air−Water Interface ⬇️

scientific article published on March 11, 2011

Spectroscopic studies on the denaturation of papain solubilized and Triton X-100-solubilized glucoamylase from rabbit small intestine

Spectroscopic studies on the mode of binding of ATP, UTP and α-amanitin with yeast RNA polymerase II

scientific article published on 01 December 1988

Stabilizing interactions in the dimer interface of alpha-subunit in Escherichia coli RNA polymerase: a graph spectral and point mutation study

scientific article

Stationary phase induced alterations in mycobacterial RNA polymerase assembly: A cue to its phenotypic resistance towards rifampicin

scientific article

Stress responses in mycobacteria

scientific article

Structural studies on the second Mycobacterium smegmatis Dps: invariant and variable features of structure, assembly and function

scientific article

Study of thermal fluctuations during thermal denaturation of DNA

Sugar Vinyl Sulfoxide Glycoconjugation of Peptides and Lysozyme: Abrogation of Proteolysis at the Lysine Sites

scientific article published on 14 August 2019

Synthesis and characterization of a fluorescent analogue of cyclic di-GMP.

scientific article published on 29 June 2012

Synthesis and hydrolysis of pppGpp in mycobacteria: a ligand mediated conformational switch in Rel.

scientific article published on 9 December 2006

Synthesis and mycobacterial growth inhibition activities of bivalent and monovalent arabinofuranoside containing alkyl glycosides

scientific article published on 2 May 2008

Synthesis of β-arabinofuranoside glycolipids, studies of their binding to surfactant protein-A and effect on sliding motilities of M. smegmatis

scientific article

Synthesis, biological studies of linear and branched arabinofuranoside-containing glycolipids and their interaction with surfactant protein A.

scientific article

Synthetic arabinan, arabinomannan glycolipids and their effects on mycobacterial growth, sliding motility and biofilm formation

Synthetic arabinomannan glycolipids and their effects on growth and motility of the Mycobacterium smegmatis

scientific article published on 2 December 2009

The design and synthesis of redox core–alpha amino acid composites based on thiol–disulfide exchange mechanism and a comparative study of their zinc abstraction potential from [CCXX] boxes in proteins

The differential effects of guanosine tetraphosphate on open complex formation at the Escherichia coli ribosomal protein promoters rplJ and rpsA P1.

scientific article

The evolving story of the omega subunit of bacterial RNA polymerase

scientific article

The mediator for stringent control, ppGpp, binds to the beta-subunit of Escherichia coli RNA polymerase

scientific article

The mycobacterial MsDps2 protein is a nucleoid-forming DNA binding protein regulated by sigma factors sigma and sigma

scientific article

The presence of two tightly bound Zn2+ ions is essential for the structural and functional integrity of yeast RNA polymerase II1

scientific article published on 01 April 1997

The role of the omega subunit of RNA polymerase in expression of the relA gene in Escherichia coli

scientific article published in February 2007

The role of ω-subunit of Escherichia coli RNA polymerase in stress response

scientific article published on 15 March 2018

Thermodynamic and Spectroscopic Studies on the Nickel Arachidate−RNA Polymerase Langmuir−Blodgett Monolayer

scientific article published on 01 February 2007

Tracing the Variation in Physiological Response to Rifampicin Across the Microbial Spectrum

scholarly article by Abhinav Dey & Dipankar Chatterji published 2012 in Journal of bacteriology and virology : JBV

Transcription of T7 DNA immobilised on latex beads and Langmuir-Blodgett film

scientific article

Transcriptional switching in Escherichia coli during stress and starvation by modulation of sigma activity

scientific article

Two zinc finger proteins from Mycobacterium smegmatis: DNA binding and activation of transcription

scientific article published on 22 June 2017

Unveiling the role of Dps in the organization of mycobacterial nucleoid

scientific article

X-ray analysis of Mycobacterium smegmatis Dps and a comparative study involving other Dps and Dps-like molecules

scientific article published in June 2004

List of works by Dipankar Chatterji

A Histidine Aspartate Ionic Lock Gates the Iron Passage in Miniferritins from Mycobacterium smegmatis

A comparative kinetic and thermodynamic perspective of the σ-competition model in Escherichia coli

A full-length bifunctional protein involved in c-di-GMP turnover is required for long-term survival under nutrient starvation in Mycobacterium smegmatis

A useful method for the synthesis of 8 azido-guanosine tri- and tetraphosphate: important substrates for many enzymatic reactions ⬇️

Bimodal protection of DNA by Mycobacterium smegmatis DNA-binding protein from stationary phase cells.

Both regions 4.1 and 4.2 of E. coli σ70 are together required for binding to bacteriophage T4 AsiA in vivo

Bovine seminalplasmin [corrected] is a DNA unwinding protein.

Co-evolution of RNA polymerase with RbpA in the phylum Actinobacteria

Conformational and ion-binding properties of cyclolinopeptide A isolated from linseed

Crystallization and preliminary X-ray diffraction analysis of Mycobacterium smegmatis Dps

Cyclic di-GMP: a second messenger required for long-term survival, but not for biofilm formation, in Mycobacterium smegmatis

Cyclic di-GMP: a second messenger required for long-term survival, but not for biofilm formation, in Mycobacterium smegmatis

DNA intervention in transcriptional activation ⬇️

DNA-Dependent RNA Polymerase II from Candida Species Is a Multiple Zinc-Containing Metalloenzyme

DNA-dependent RNA polymerase II from Candida species is a multiple zinc-containing metalloenzyme

Deletion of the Gene rpoZ, Encoding the Subunit of RNA Polymerase, in Mycobacterium smegmatis Results in Fragmentation of the ' Subunit in the Enzyme Assembly

Deletion of the gene rpoZ, encoding the omega subunit of RNA polymerase, in Mycobacterium smegmatis results in fragmentation of the beta' subunit in the enzyme assembly

Deletion of the rpoZ gene, encoding the omega subunit of RNA polymerase, results in pleiotropic surface-related phenotypes in Mycobacterium smegmatis.

Detection of putative Zn(II) binding sites within Escherichia coli RNA polymerase: inconsistency between sequence-based prediction and 65 Zn blotting

Differential inhibition of abortive transcription initiation at different promoters catalysed by E. coli RNA polymerase. Effect of rifampicin on purine or pyramidine-initiated phosphodiester synthesis.

Differential mechanisms of binding of anti-sigma factors Escherichia coli Rsd and bacteriophage T4 AsiA to E. coli RNA polymerase lead to diverse physiological consequences

Direct Observation of Large Temperature Fluctuations during DNA Thermal Denaturation

Escherichia coli RNA polymerase subunit omega and its N-terminal domain bind full-length beta' to facilitate incorporation into the alpha2beta subassembly

Estimation of Förster's distance between two ends of Dps protein from mycobacteria: distance heterogeneity as a function of oligomerization and DNA binding

Evaluation of the role of sigma B in Mycobacterium smegmatis

Evidence for a ppGpp-binding site on Escherichia coli RNA polymerase: proximity relationship with the rifampicin-binding domain

Evidence for a pyrimidine-nucleotide-specific initiation site (the i site) on Escherichia coli RNA polymerase. Proximity relationship with the inhibitor binding domain.

Fluorescence spectroscopy analysis of active and regulatory sites of RNA polymerase.

Formation of a DNA layer on Langmuir-Blodgett films and its enzymatic digestion

Functional complementation between mutations at two distant positions in Escherichia coli RNA polymerase as revealed by second-site suppression.

Glycopeptidolipids: immuno-modulators in greasy mycobacterial cell envelope

GroEL is involved in activation of Escherichia coli RNA polymerase devoid of the omega subunit in vivo

Guanosine tetraphosphate-induced dissociation of open complexes at the Escherichia coli ribosomal protein promoters rplJ and rpsA P1: nanosecond depolarization spectroscopic studies

High intracellular level of guanosine tetraphosphate in Mycobacterium smegmatis changes the morphology of the bacterium

Hybridization and Immobilization of Long ds-DNAs on Polystyrene Microspheres

Hyperglycosylation of glycopeptidolipid of Mycobacterium smegmatis under nutrient starvation: structural studies

Identification and characterization of rel promoter element of Mycobacterium tuberculosis

Identification and characterization of starvation induced msdgc-1 promoter involved in the c-di-GMP turnover

Identification and characterization of the dps promoter of Mycobacterium smegmatis: promoter recognition by stress-specific extracytoplasmic function sigma factors sigmaH and sigmaF.

Identification, activity and disulfide connectivity of C-di-GMP regulating proteins in Mycobacterium tuberculosis

Identifying N60D mutation in ω subunit of Escherichia coli RNA polymerase by bottom-up proteomic approach

Inactivation of the bacterial RNA polymerase due to acquisition of secondary structure by the ω subunit

Inhibition of mycobacterial growth by plumbagin derivatives

Inter-subunit recognition and manifestation of segmental mobility in Escherichia coli RNA polymerase: a case study with omega-beta' interaction

Interaction of bacteriophage T4 AsiA protein with Escherichia coli sigma70 and its variant.

Interaction of bovine seminalplasmin with Escherichia coli RNA polymerase in the presence of rifampicin

Langmuir monolayer as a tool toward visualization of a specific DNA-protein complex

MS_RHII-RSD, a dual-function RNase HII-(p)ppGpp synthetase from Mycobacterium smegmatis

Mechanism of initiation of transcription by Escherichia coli RNA polymerase on supercoiled template.

Molecular dissection of the mycobacterial stringent response protein Rel

Molecular insights into the mechanism of phenotypic tolerance to rifampicin conferred on mycobacterial RNA polymerase by MsRbpA.

Molecular mechanism of in vitro oligomerization of Dps from Mycobacterium smegmatis: mutations of the residues identified by "interface cluster" analysis.

Mycobacterial stress regulation: The Dps â twin sisterâ defense mechanism and structure-function relationship

Nonspecific Interaction between DNA and Protein allows for Cooperativity: A Case Study with Mycobacterium DNA Binding Protein

Promoter search and strength of a promoter: two important means for regulation of gene expression inEscherichia coli

Proteomics and mass spectrometric studies reveal planktonic growth of Mycobacterium smegmatis in biofilm cultures in the absence of rpoZ.

RelZ-Mediated Stress Response in Mycobacterium smegmatis: pGpp Synthesis and Its Regulation

Resonance energy transfer study on the proximity relationship between the GTP binding site and the rifampicin binding site of Escherichia coli RNA polymerase

Retrobiosynthetic approach delineates the biosynthetic pathway and the structure of the acyl chain of mycobacterial glycopeptidolipids

Revisiting the stringent response, ppGpp and starvation signaling.

Role of N and C-terminal tails in DNA binding and assembly in Dps: structural studies of Mycobacterium smegmatis Dps deletion mutants

Role of an RNA polymerase interacting protein, MsRbpA, from Mycobacterium smegmatis in phenotypic tolerance to rifampicin

Sequence specific interaction between promoter DNA and Escherichia coli RNA polymerase: comparative thermodynamic analysis with one immobilized partner

Sequential Assembly of an Active RNA Polymerase Molecule at the Air−Water Interface ⬇️

Spectroscopic studies on the denaturation of papain solubilized and Triton X-100-solubilized glucoamylase from rabbit small intestine

Spectroscopic studies on the mode of binding of ATP, UTP and α-amanitin with yeast RNA polymerase II

Stabilizing interactions in the dimer interface of alpha-subunit in Escherichia coli RNA polymerase: a graph spectral and point mutation study

Stationary phase induced alterations in mycobacterial RNA polymerase assembly: A cue to its phenotypic resistance towards rifampicin

Stress responses in mycobacteria

Structural studies on the second Mycobacterium smegmatis Dps: invariant and variable features of structure, assembly and function

Study of thermal fluctuations during thermal denaturation of DNA

Sugar Vinyl Sulfoxide Glycoconjugation of Peptides and Lysozyme: Abrogation of Proteolysis at the Lysine Sites

Synthesis and characterization of a fluorescent analogue of cyclic di-GMP.

Synthesis and hydrolysis of pppGpp in mycobacteria: a ligand mediated conformational switch in Rel.

Synthesis and mycobacterial growth inhibition activities of bivalent and monovalent arabinofuranoside containing alkyl glycosides

Synthesis of β-arabinofuranoside glycolipids, studies of their binding to surfactant protein-A and effect on sliding motilities of M. smegmatis

Synthesis, biological studies of linear and branched arabinofuranoside-containing glycolipids and their interaction with surfactant protein A.

Synthetic arabinan, arabinomannan glycolipids and their effects on mycobacterial growth, sliding motility and biofilm formation

Synthetic arabinomannan glycolipids and their effects on growth and motility of the Mycobacterium smegmatis