List of works by Thomas E. Nichols

A BAYESIAN HIERARCHICAL SPATIAL POINT PROCESS MODEL FOR MULTI-TYPE NEUROIMAGING META-ANALYSIS ⬇️

scientific article published on September 2014

A Bayesian model of category-specific emotional brain responses

scientific article

A Bayesian non-parametric Potts model with application to pre-surgical FMRI data

scientific article

A Comparison of Gray Matter Density in Restless Legs Syndrome Patients and Matched Controls Using Voxel-Based Morphometry

article

A comparison of random field theory and permutation methods for the statistical analysis of MEG data

scientific article

A defense of using resting-state fMRI as null data for estimating false positive rates

scientific article

A hybrid procedure for detecting global treatment effects in multivariate clinical trials: theory and applications to fMRI studies

scientific article published on 15 December 2011

A kernel machine method for detecting effects of interaction between multidimensional variable sets: an imaging genetics application

scientific article

A multi-center randomized proof-of-concept clinical trial applying [¹⁸F]FDG-PET for evaluation of metabolic therapy with rosiglitazone XR in mild to moderate Alzheimer's disease

scientific article published on January 2010

A novel ANCOVA design for analysis of MEG data with application to a visual attention study.

scientific article

A positive-negative mode of population covariation links brain connectivity, demographics and behavior

scientific article

A voxelation-corrected non-stationary 3D cluster-size test based on random field theory

scientific article

ANALYSIS OF MULTIPLE SCLEROSIS LESIONS VIA SPATIALLY VARYING COEFFICIENTS. ⬇️

scientific article

Accelerated estimation and permutation inference for ACE modeling

scientific article published on 29 April 2019

Accelerating permutation testing in voxel-wise analysis through subspace tracking: A new plugin for SnPM.

scientific article published on 15 July 2017

Acquisition and voxelwise analysis of multi-subject diffusion data with tract-based spatial statistics

scientific article

Activation of the medial prefrontal cortex and extended amygdala by individual ratings of emotional arousal: a fMRI study

scientific article published in February 2003

Adjusting the Neuroimaging Statistical Inferences for Nonstationarity

scientific article published on 01 January 2009

Adjusting the effect of nonstationarity in cluster-based and TFCE inference.

scientific article published on 16 October 2010

Age differences in the brain mechanisms of good taste

scientific article published on 2 April 2015

Anatomically-distinct genetic associations of APOE epsilon4 allele load with regional cortical atrophy in Alzheimer's disease

scientific article published in November 2008

Association of GSK3beta polymorphisms with brain structural changes in major depressive disorder

scientific article

Association of regional gray matter volume loss and progression of white matter lesions in multiple sclerosis — A longitudinal voxel-based morphometry study

scientific article published on 25 October 2008

Associations of cognitive performance with cardiovascular magnetic resonance phenotypes in the UK Biobank

scientific article published on 01 April 2022

Behavior, sensitivity, and power of activation likelihood estimation characterized by massive empirical simulation

scientific article published on 11 May 2016

Best practices in data analysis and sharing in neuroimaging using MRI.

scientific article

Beyond Bonferroni Revisited: Concerns over inflated false positives in conservation genetics, genetics, and neuroscience

article

Brain aging comprises many modes of structural and functional change with distinct genetic and biophysical associations

scientific article published on 05 March 2020

Brain network analysis: separating cost from topology using cost-integration

scientific article

COMT haplotype variation affects human prefrontal function

Cerebrovascular risk factors impact frontoparietal network integrity and executive function in healthy ageing

scientific article published on 07 September 2020

Changes in forebrain function from waking to REM sleep in depression: preliminary analyses of [18F]FDG PET studies

scientific article

Classifying individuals at high-risk for psychosis based on functional brain activity during working memory processing

scientific article

Cluster failure revisited: Impact of first level design and physiological noise on cluster false positive rates

article

Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates ⬇️

scientific article (publication date: 12 July 2016)

Cluster mass inference via random field theory

scientific article published on 27 August 2008

Combining voxel intensity and cluster extent with permutation test framework

scientific article

Commentary on Vul et al.'s (2009) "Puzzlingly High Correlations in fMRI Studies of Emotion, Personality, and Social Cognition".

scientific article published in May 2009

Common genetic variants influence human subcortical brain structures

scientific article

Comparison of a non-stationary voxelation-corrected cluster-size test with TFCE for group-Level MRI inference

scientific article

Comparison of heritability estimates on resting state fMRI connectivity phenotypes using the ENIGMA analysis pipeline

article

Confound modelling in UK Biobank brain imaging

scientific article published on 02 June 2020

Controlling the familywise error rate in functional neuroimaging: a comparative review

scientific article

Corrigendum to “Multi-site genetic analysis of diffusion images and voxelwise heritability analysis: A pilot project of the ENIGMA–DTI working group” [NeuroImage 81 (2013) 455–469]

scholarly article published in NeuroImage

Development of impulse control circuitry in children of alcoholics

scientific article

Diagnosis and exploration of massively univariate neuroimaging models

scientific article published in July 2003

Diagnosis of single-subject and group fMRI data with SPMd

scientific article

Directed functional connectivity using dynamic graphical models.

scientific article published on 3 April 2018

Discovering genetic associations with high-dimensional neuroimaging phenotypes: A sparse reduced-rank regression approach

scientific article published on 17 July 2010

Do Candidate Genes Affect the Brain's White Matter Microstructure? Large-Scale Evaluation of 6,165 Diffusion MRI Scans

article

ENIGMA and the individual: Predicting factors that affect the brain in 35 countries worldwide

scientific article published on 4 December 2015

EXPLORING HUMAN VISUAL ATTENTION IN AN MEG STUDY OF A SPATIAL CUEING PARADIGM USING A NOVEL ANCOVA DESIGN

Effect of immunomodulatory medication on regional gray matter loss in relapsing-remitting multiple sclerosis--a longitudinal MRI study

scientific article published on 16 February 2010

Estimation efficiency and statistical power in arterial spin labeling fMRI

scientific article published on 24 July 2006

Estimation of brain age delta from brain imaging

scientific article published on 12 June 2019

Evaluating the consistency and specificity of neuroimaging data using meta-analysis

scientific article (publication date: March 2009)

Everything you never wanted to know about circular analysis, but were afraid to ask

scientific article

Exploring fMRI Results Space: 31 Variants of an fMRI Analysis in AFNI, FSL, and SPM

scientific article

Exploring the impact of analysis software on task fMRI results

scientific article published on 02 May 2019

Extending the Human Connectome Project across ages: Imaging protocols for the Lifespan Development and Aging projects

False positives in neuroimaging genetics using voxel-based morphometry data

scientific article

Fast and accurate modelling of longitudinal and repeated measures neuroimaging data

scientific article

Fast and powerful genome wide association of dense genetic data with high dimensional imaging phenotypes

scientific article published in Nature Communications

Faster permutation inference in brain imaging

scientific article published on 07 June 2016

Fixing the stimulus-as-fixed-effect fallacy in task fMRI.

scientific article

Functional connectivity in auditory-verbal short-term memory in Alzheimer's disease

scientific article published in October 1996

Functional connectomics from resting-state fMRI.

scientific article

Gender differences in patterns of cerebral activation during equal experience of painful laser stimulation

article

Generalizable representations of pain, cognitive control, and negative emotion in medial frontal cortex

scientific article published in January 2018

Generalized reduced rank latent factor regression for high dimensional tensor fields, and neuroimaging-genetic applications

scientific article published on 22 September 2016

Genes regulated by learning in the hippocampus

scientific article

Genetic analysis of cortical thickness and fractional anisotropy of water diffusion in the brain

scientific article

Genetic influences on schizophrenia and subcortical brain volumes: large-scale proof of concept

scientific article published on February 2016

Genetic variation in GOLM1 and prefrontal cortical volume in Alzheimer's disease

scientific article published on 8 June 2010

Genetics of the connectome

scientific article

Global genetic variations predict brain response to faces

scientific article

Guidelines for reporting an fMRI study

scientific article published on 8 December 2007

Guidelines for the content and format of PET brain data in publications and archives: A consensus paper

scientific article published on 16 February 2020

Heritability estimates on resting state fMRI data using ENIGMA analysis pipeline

scientific article published in January 2018

Heritability of fractional anisotropy in human white matter: a comparison of Human Connectome Project and ENIGMA-DTI data

scientific article

Heterochronicity of white matter development and aging explains regional patient control differences in schizophrenia

scientific article published in August 2016

Homogenizing Estimates of Heritability Among SOLAR-Eclipse, OpenMx, APACE, and FPHI Software Packages in Neuroimaging Data

article

Identification of common variants associated with human hippocampal and intracranial volumes

scientific article published on 15 April 2012

Impact of combined estradiol and norethindrone therapy on visuospatial working memory assessed by functional magnetic resonance imaging

scientific article published on 15 August 2006

Impact of complex genetic variation in COMT on human brain function

scientific article published on 20 June 2006

Impact of family structure and common environment on heritability estimation for neuroimaging genetics studies using Sequential Oligogenic Linkage Analysis Routines

scientific article

Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group

scientific article

Improving data availability for brain image biobanking in healthy subjects: practice-based suggestions from an international multidisciplinary working group

Increasing power for voxel-wise genome-wide association studies: the random field theory, least square kernel machines and fast permutation procedures

scientific article published on 16 July 2012

Insight and inference for DVARS.

scientific article published on 4 January 2018

Isolating the sources of pipeline-variability in group-level task-fMRI results

scientific article published on 13 November 2021

Joint Analysis of Cortical Area and Thickness as a Replacement for the Analysis of the Volume of the Cerebral Cortex

scientific article published on 28 November 2017

Joint genetic analysis of hippocampal size in mouse and human identifies a novel gene linked to neurodegenerative disease

scientific article

Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706)

scientific article published on 30 October 2019

Large-scale automated synthesis of human functional neuroimaging data

scientific article (publication date: 26 June 2011)

Lesion probability maps of white matter hyperintensities in elderly individuals: results of the Austrian stroke prevention study

scientific article

Linkage disequilibrium: ancient history drives the new genetics

scientific article

Longitudinal gray matter changes in multiple sclerosis--differential scanner and overall disease-related effects

scientific article published on 29 April 2011

Massively expedited genome-wide heritability analysis (MEGHA).

scientific article

Measuring and comparing brain cortical surface area and other areal quantities

scientific article published on 15 March 2012

Medial Demons Registration Localizes The Degree of Genetic Influence Over Subcortical Shape Variability: An N= 1480 Meta-Analysis

scientific article

Meta Analysis of Functional Neuroimaging Data via Bayesian Spatial Point Processes

scientific article

Meta-analysis of neuroimaging data: a comparison of image-based and coordinate-based pooling of studies

scientific article

Modeling and inference of multisubject fMRI data

scientific article

Modeling inter-subject variability in FMRI activation location: a Bayesian hierarchical spatial model

scientific article

Multi-level block permutation

scientific article

Multi-site genetic analysis of diffusion images and voxelwise heritability analysis: a pilot project of the ENIGMA-DTI working group

scientific article published on 28 April 2013

Multi-site study of additive genetic effects on fractional anisotropy of cerebral white matter: Comparing meta and megaanalytical approaches for data pooling

scientific article (publication date: 15 July 2014)

Multiple comparison procedures for neuroimaging genomewide association studies

scientific article

Multiple testing corrections, nonparametric methods, and random field theory

scientific article

Multivariate pattern classification of gray matter pathology in multiple sclerosis

scientific article published on 5 January 2012

Network modelling methods for FMRI.

scientific article

NeuroSynth: a new platform for large-scale automated synthesis of human functional neuroimaging data

NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain

scientific article

NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain

scientific article

Non-parametric combination and related permutation tests for neuroimaging.

scientific article published on 5 February 2016

Non-white noise in fMRI: does modelling have an impact?

scientific article

Nonparametric permutation tests for functional neuroimaging: a primer with examples

scientific article (publication date: 2002)

Nonstationary cluster-size inference with random field and permutation methods

scientific article

Novel genetic loci associated with hippocampal volume

scientific article published on 18 January 2017

Novel genetic loci underlying human intracranial volume identified through genome-wide association

scientific article (publication date: 3 October 2016)

On study design in neuroimaging heritability analyses

Optimization of experimental design in fMRI: a general framework using a genetic algorithm

scientific article published in February 2003

Optimizing the design and analysis of clinical functional magnetic resonance imaging research studies

scientific article

Orbitofrontal connectivity with resting-state networks is associated with midbrain dopamine D3 receptor availability

scientific article

PET brain mapping study of auditory verbal supraspan memory versus visual fixation in schizophrenia

scientific article published in January 1997

Pathway-based approaches to imaging genetics association studies: Wnt signaling, GSK3beta substrates and major depression

scientific article published on 26 February 2010

Permutation inference for the general linear model

scientific article

Placebo effects mediated by endogenous opioid activity on mu-opioid receptors.

scientific article

Power Estimates for Voxel-Based Genetic Association Studies Using Diffusion Imaging

article

Power and sample size calculations for fMRI studies based on the prevalence of active peaks

Power calculation for group fMRI studies accounting for arbitrary design and temporal autocorrelation

scientific article published on 19 August 2007

Preventing Alzheimer's disease-related gray matter atrophy by B-vitamin treatment

scientific article

Progression in disability and regional grey matter atrophy in relapsing–remitting multiple sclerosis

scientific article published on 26 June 2013

Pronociceptive and antinociceptive effects of estradiol through endogenous opioid neurotransmission in women

scientific article published on May 2006

Quantifying uncertainty in brain-predicted age using scalar-on-image quantile regression

scientific article published on 02 June 2020

Rank-order versus mean based statistics for neuroimaging

scientific article published on 25 January 2007

Reduced gamma-aminobutyric acid(A)-benzodiazepine binding sites in insular cortex of individuals with panic disorder

scientific article published in July 2007

Reply to Brown and Behrmann, Cox, et al., and Kessler et al.: Data and code sharing is the way forward for fMRI

scientific article

Reply to Chen et al.: Parametric methods for cluster inference perform worse for two-sided t-tests

Reproducible brain-wide association studies require thousands of individuals

scientific article published on 16 March 2022

Scanning the Horizon: Towards transparent and reproducible neuroimaging research

biorxiv article

Scanning the horizon: towards transparent and reproducible neuroimaging research.

scientific article

Sharing brain mapping statistical results with the neuroimaging data model

scientific article

Sharing the wealth: Neuroimaging data repositories

scientific article

Simple group fMRI modeling and inference

scientific article published on 20 May 2009

Spatial Bayesian latent factor regression modeling of coordinate-based meta-analysis data

scientific article

Spatiotemporal distribution of white matter lesions in relapsing-remitting and secondary progressive multiple sclerosis

scientific article

Spatiotemporal distribution pattern of white matter lesion volumes and their association with regional grey matter volume reductions in relapsing-remitting multiple sclerosis

scientific article published in October 2010

Spatiotemporal reconstruction of list-mode PET data

scientific article

Special issue on mathematics in brain imaging.

scientific article published on 5 November 2008

Stable between-subject statistical inference from unstable within-subject functional connectivity estimates

article by Diego Vidaurre et al published 25 October 2018 in Human Brain Mapping

Stable between-subject statistical inference from unstable within-subject functional connectivity estimates

scholarly article published 19 February 2018

Statistical Challenges in "Big Data" Human Neuroimaging

scientific article published in January 2018

Statistical analysis of multiplex brain gene expression images

scientific article published in October 2002

Stochastic blockmodeling of the modules and core of the Caenorhabditis elegans connectome

scientific article

Striatal [11C]dihydrotetrabenazine and [11C]methylphenidate binding in Tourette syndrome

scientific article published on April 2009

Structural Variability in the Human Brain Reflects Fine-Grained Functional Architecture at the Population Level

scientific article published on 31 May 2019

Structural brain changes in patients with recurrent major depressive disorder presenting with anxiety symptoms

scientific article

Switching attention and resolving interference: fMRI measures of executive functions

scientific article published in January 2003

Ten simple rules for neuroimaging meta-analysis

scientific article published on 24 November 2017

Test-retest variability of serotonin 5-HT2A receptor binding measured with positron emission tomography and [18F]altanserin in the human brain

scientific article published in December 1998

The Brain Imaging Data Structure: a standard for organizing and describing outputs of neuroimaging experiments

article

The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data

scientific article

The additive impact of cardio-metabolic disorders and psychiatric illnesses on accelerated brain aging

scientific article published on 03 February 2022

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments

scientific article, 2016

The common genetic influence over processing speed and white matter microstructure: Evidence from the Old Order Amish and Human Connectome Projects

scientific article

The coordinate-based meta-analysis of neuroimaging data.

scientific article

The danger of systematic bias in group-level FMRI-lag-based causality estimation

scientific article published on 16 August 2011

The heritability of multi-modal connectivity in human brain activity

scientific article published on 26 July 2017

Threshold-free cluster enhancement: addressing problems of smoothing, threshold dependence and localisation in cluster inference.

scientific article published on 11 April 2008

Thresholding of statistical maps in functional neuroimaging using the false discovery rate

scientific article (publication date: April 2002)

Thyroid hormone transporter genes and grey matter changes in patients with major depressive disorder and healthy controls

scientific article published on 3 January 2011

Toward a taxonomy of attention shifting: individual differences in fMRI during multiple shift types

scientific article published in June 2005

Tract-based spatial statistics: voxelwise analysis of multi-subject diffusion data

scientific article (publication date: 15 July 2006)

Transcriptomics of cortical gray matter thickness decline during normal aging

scientific article

Using Gaussian-process regression for meta-analytic neuroimaging inference based on sparse observations.

scientific article published on 3 March 2011

Valid conjunction inference with the minimum statistic

scientific article published in April 2005

Validating cluster size inference: random field and permutation methods

scientific article published in December 2003

Variability in the analysis of a single neuroimaging dataset by many teams

scientific article published on 20 May 2020

Voxelwise distribution of acute ischemic stroke lesions in patients with newly diagnosed atrial fibrillation: Trigger of arrhythmia or only target of embolism?

scientific article

When the Single Matters more than the Group (II): Addressing the Problem of High False Positive Rates in Single Case Voxel Based Morphometry Using Non-parametric Statistics.

scientific article published on 25 January 2016

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