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List of works by Ryszard Adamiak

2-Aminopurine labelled RNA bulge loops. Synthesis and thermodynamics

scientific article published in January 1996

A normal genetic variation modulates synaptic MMP-9 protein levels and the severity of schizophrenia symptoms

scientific article published on 16 June 2017

An algorithm for an automatic NOE pathways analysis of 2D NMR spectra of RNA duplexes.

scientific article published in January 2004

An assignment walk through 3D NMR spectrum

scientific article published in March 2009

Automated 3D RNA structure prediction using the RNAComposer method for riboswitches

scientific article

Automated 3D structure composition for large RNAs

scientific article

Automated RNA 3D Structure Prediction with RNAComposer

Bulged adenosine influence on the RNA duplex conformation in solution

scientific article

Chromatography on Sephadex LH20 as an efficient purification step after removal of internucleotide 2,2,2-trichloroethyl protective groups from oligoribonucleotide phosphotriesters.

scientific article

Compatibility of organic solvents for electrochemical measurements in PDMS-based microfluidic devices

Crystal structure of 2'-O-Me(CGCGCG)2, an RNA duplex at 1.30 A resolution. Hydration pattern of 2'-O-methylated RNA

scientific article

Fluorescent alpha-anomeric 1,N(6)etheno-deoxyadenosine in DNA duplexes. The alpha-epsilondA / dG pair

scientific article published on 01 October 2000

Fluorescent nucleoside derivatives: Luminescence study of 4-dimethylaminopyridinium chloride derived from guanosine

scientific article published on 01 December 1994

High salt solution structure of a left-handed RNA double helix

scientific article

High-throughput method for the prediction of low-resolution, three-dimensional RNA structures

scientific article published in January 2006

Hypermodified nucleosides of tRNA: synthesis, chemistry, and structural features of biological interest

scientific article

Metal binding ability of hypermodified nucleosides of t-RNA. Potentiometric and spectroscopic studies on the metal complexes of N-[(9-beta-D-ribofuranosylpurin-6-yl)-carbamoyl] threonine

scientific article published on 01 December 1990

New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation.

scientific article published on 11 December 2017

New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure

scientific article published on 14 October 2016

New in silico approach to assessing RNA secondary structures with non-canonical base pairs

scientific article published on 2 September 2015

New observations concerning the chloroacetaldehyde reaction with some tRNA constituents. Stable intermediates, kinetics and selectivity of the reaction

scientific article published on March 1978

New, extended hairpin form of the TAR-2 RNA domain points to the structural polymorphism at the 5' end of the HIV-2 leader RNA.

scientific article published on 31 May 2006

New, ionic side-products in oligonucleotide synthesis: formation and reactivity of fluorescent N-/purin-6-yl/pyridinium salts

scientific article

Noncanonical G(syn)-G(anti) base pairs stabilized by sulphate anions in two X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex

scientific article

Nucleoside 3'-phosphotriesters as key intermediates for the oligoribonucleotide synthesis. IV. New method for removal of 2,2,2-trichloroethyl group and 31P NMR as a new tool for analysis of deblocking of internucleotide phosphate protecting groups

scientific article published on July 1977

Nucleoside-3'-phosphotriesters as key intermediates for the oligoribonucleotide synthesis. III. An improved preparation of nucleoside 3'-phosphotriesters, their 1H NMR characterization and new conditions for removal of 2-cyanoethyl group

scientific article published on December 1976

Preparation of HIV TAR RNA with RNA scissors

scientific article published on 01 August 1999

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures

scientific article

RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures

scientific article published on 5 October 2007

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

scientific article published on 16 April 2015

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

scientific article

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

scientific article published on 05 May 2020

RNAComposer and RNA 3D structure prediction for nanotechnology

scientific article

RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures

scholarly article by Maciej Antczak published in August 2018

RNAlyzer--novel approach for quality analysis of RNA structural models

scientific article published on 25 April 2013

RNApdbee 2.0: multifunctional tool for RNA structure annotation.

scientific article published in July 2018

RNApdbee--a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs

scientific article

RNAssess--a web server for quality assessment of RNA 3D structures

scientific article published on 11 June 2015

Solution structure of RNA duplexes containing alternating CG base pairs: NMR study of r(CGCGCG)2 and 2'-O-Me(CGCGCG)2 under low salt conditions

scientific article

Spatial distribution functions as a tool in the analysis of ribonucleic acids hydration--molecular dynamics studies

scientific article published on 01 May 2000

Structure and dynamics of a DNA duplex containing single alpha-anomeric deoxyadenosine residue.

scientific article published in January 2001

Studies directed toward introduction of N6-isopentenyladenosine and its 2-methylthio analogue into oligoribonucleotides

scientific article published on January 1987

The 1.19 A X-ray structure of 2'-O-Me(CGCGCG)(2) duplex shows dehydrated RNA with 2-methyl-2,4-pentanediol in the minor groove

scientific article

The HIV-2 TAR RNA domain as a potential source of viral-encoded miRNA. A reconnaissance study

scientific article

The bulge region of HIV-1 TAR RNA binds metal ions in solution.

scientific article

The chemical synthesis of the anticodon loop of an eukaryotic initiator tRNA containing the hypermodified nucleoside N6-/N-threonylcarbonyl/-adenosine/t6A/1.

scientific article published on June 1978

The complex between ribonuclease T1 and 3'GMP suggests geometry of enzymic reaction path. An X-ray study

scientific article

The in vitro loose dimer structure and rearrangements of the HIV-2 leader RNA.

scientific article

The matrix domain contributes to the nucleic acid chaperone activity of HIV-2 Gag.

scientific article

Z-RNA: the solution NMR structure of r(CGCGCG).

scientific article

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