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List of works by Marek Figlerowicz

2D-PAGE as an effective method of RNA degradome analysis.

scientific article published on 11 May 2011

A Medicago truncatula ABC transporter belonging to subfamily G modulates the level of isoflavonoids

scientific article

A gene expression microarray for Nicotiana benthamiana based on de novo transcriptome sequence assembly

scientific article

A mosaic genetic structure of the human population living in the South Baltic region during the Iron Age.

scientific article published on 6 February 2018

A mutation in the putative RNA polymerase gene inhibits nonhomologous, but not homologous, genetic recombination in an RNA virus

scientific article

A new algorithm for genome assembly from short reads

A new family of ferritin genes from Lupinus luteus--comparative analysis of plant ferritins, their gene structure, and evolution

scientific article

A new short oligonucleotide-based strategy for the precursor-specific regulation of microRNA processing by dicer

scientific article

A plant-derived edible vaccine against hepatitis B virus.

scientific article published in October 1999

A tiling microarray for global analysis of chloroplast genome expression in cucumber and other plants.

scientific article

A universal BMV-based RNA recombination system--how to search for general rules in RNA recombination

scientific article

Altered Levels of Proteins and Phosphoproteins, in the Absence of Early Causative Transcriptional Changes, Shape the Molecular Pathogenesis in the Brain of Young Presymptomatic Ki91 SCA3/MJD Mouse.

scientific article published on 14 June 2019

AmiRNA Designer - new method of artificial miRNA design

scientific article published on 19 January 2016

An MLPA-based approach for high-resolution genotyping of disease-related multi-allelic CNVs

scientific article published on 2 June 2014

An MLPA-based strategy for discrete CNV genotyping: CNV-miRNAs as an example.

scientific article published on 8 March 2013

Analysis of boutique arrays: a universal method for the selection of the optimal data normalization procedure

scientific article

Analysis of oral microbiome from fossil human remains revealed the significant differences in virulence factors of modern and ancient Tannerella forsythia

scientific article published on 15 June 2020

Application of click chemistry to the production of DNA microarrays.

scientific article

Arabidopsis thaliana cbp80, c2h2, and flk Knockout Mutants Accumulate Increased Amounts of Circular RNAs

scientific article published on 21 August 2020

Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location.

scientific article

Aryl H-phosphonates 17: (N-aryl)phosphoramidates of pyrimidine nucleoside analogues and their synthesis, selected properties, and anti-HIV activity

scientific article published on 9 September 2011

Assembling the SARS-CoV genome -- new method based on graph theoretical approach

scientific article published in January 2004

Associations of the calcium-sensing receptor gene CASR rs7652589 SNP with nephrolithiasis and secondary hyperparathyroidism in haemodialysis patients.

scientific article published on 14 October 2016

AthCNV: A Map of DNA Copy Number Variations in the Arabidopsis thaliana Genome

scientific article published on 07 April 2020

Biophysical analysis of BMV virions purified using a novel method.

scientific article published on 12 October 2017

Cancer Stem Cell-Inducing Media Activates Senescence Reprogramming in Fibroblasts

scientific article published on 30 June 2020

Changes in the profile of flavonoid accumulation in Medicago truncatula leaves during infection with fungal pathogen Phoma medicaginis.

scientific article published on 28 May 2009

Characterization of RNP Networks of PUM1 and PUM2 Post-Transcriptional Regulators in TCam-2 Cells, a Human Male Germ Cell Model

scientific article published on 16 April 2020

Characterization of Sus scrofa small non-coding RNAs present in both female and male gonads

scientific article

Characterization of a novel 5' subgenomic RNA3a derived from RNA3 of Brome mosaic bromovirus

scientific article

Chronic kidney disease-related atherosclerosis - proteomic studies of blood plasma

scientific article

Comparative proteome analysis of acute myeloid leukemia with and without maturation.

scientific article

Comparative proteomics in acute myeloid leukemia

scientific article published on 29 May 2012

Comprehensive analysis of microorganisms accompanying human archaeological remains.

scientific article published on 13 June 2017

Computational prediction of non-enzymatic RNA degradation patterns.

scientific article

Copy number polymorphism in plant genomes

scientific article

Copy number variation of genes involved in the hepatitis C virus-human interactome

scientific article

Correction: Functional Insights into Recombinant TROSPA Protein from

scientific article published on 3 December 2013

Corrigendum: The Generation of Mouse and Human Huntington Disease iPS Cells Suitable for In vitro Studies on Huntingtin Function.

scientific article published on 28 September 2017

Crystal engineering of cytidine and deoxycytidine sulphates. I. Preparation, and unusual properties

Deeper insight into chronic kidney disease-related atherosclerosis: comparative proteomic studies of blood plasma using 2DE and mass spectrometry.

scientific article

ENHO, RXRA, and LXRA polymorphisms and dyslipidaemia, related comorbidities and survival in haemodialysis patients

scientific article published on 09 November 2018

Early virological response in children with chronic hepatitis C treated with pegylated interferon and ribavirin

scientific article published in June 2007

Effects of G-quadruplex topology on translational inhibition by tRNA fragments in mammalian and plant systems in vitro.

scientific article

Esterase D and gamma 1 actin level might predict results of induction therapy in patients with acute myeloid leukemia without and with maturation

scientific article published on 02 October 2013

EvOligo: A Novel Software to Design and Group Libraries of Oligonucleotides Applicable for Nucleic Acid-Based Experiments.

scientific article

Evolution of hepatitis C virus hypervariable region 1 in chronically infected children.

scientific article published on 18 May 2012

Expression Landscape of circRNAs in Arabidopsis thaliana Seedlings and Adult Tissues

scientific article published on 10 September 2020

Ferritins and nodulation in Lupinus luteus: iron management in indeterminate type nodules

scientific article published on 22 September 2007

Full-size ABC transporters from the ABCG subfamily in medicago truncatula.

scientific article

Functional characterization of RNA fragments using high-throughput interactome screening

scientific article published on 16 October 2018

Functional insights into recombinant TROSPA protein from Ixodes ricinus

scientific article

Gene expression profiling of acute myeloid leukemia samples from adult patients with AML-M1 and -M2 through boutique microarrays, real-time PCR and droplet digital PCR.

scientific article published on 28 December 2017

Genetic variability: The key problem in the prevention and therapy of RNA‐based virus infections ⬇️

scientific article published on July 1, 2003

Hepatitis C virus quasispecies in chronically infected children subjected to interferon-ribavirin therapy

scientific article

High copy number variation of cancer-related microRNA genes and frequent amplification of DICER1 and DROSHA in lung cancer.

scientific article

High resolution ArrayCGH and expression profiling identifies PTPRD and PCDH17/PCH68 as tumor suppressor gene candidates in laryngeal squamous cell carcinoma.

scientific article published on 7 December 2010

Homologous crossovers among molecules of brome mosaic bromovirus RNA1 or RNA2 segments in vivo

scientific article

How RNA viruses exchange their genetic material

scientific article published on January 1, 2001

How short RNAs impact the human ribonuclease Dicer activity: putative regulatory feedback-loops and other RNA-mediated mechanisms controlling microRNA processing

scientific article published on 13 October 2016

Human AGEs: an interactive spatio-temporal visualization and database of human archeogenomics ⬇️

scientific article published on 22 May 2023

Human ribonuclease Dicer – structure and functions

scientific article published on 01 October 2019

Human- and virus-encoded microRNAs as potential targets of antiviral therapy.

scientific article published on July 2009

Huntington Disease as a Neurodevelopmental Disorder and Early Signs of the Disease in Stem Cells.

scientific article published on 11 May 2017

Huntington disease iPSCs show early molecular changes in intracellular signaling, the expression of oxidative stress proteins and the p53 pathway

scientific article

Identification of Altered Developmental Pathways in Human Juvenile HD iPSC With 71Q and 109Q Using Transcriptome Profiling

scientific article published on 01 January 2018

Identification of stable, high copy number, medium-sized RNA degradation intermediates that accumulate in plants under non-stress conditions

scientific article (publication date: October 2013)

Impact of DNA microarray data transformation on gene expression analysis - comparison of two normalization methods

scientific article

Interaction of polyamines, their protonated salts and metal complexes with nucleic acid fragments

L1Base 2: more retrotransposition-active LINE-1s, more mammalian genomes

scientific article

Legume Cytosolic and Plastid Acetyl-Coenzyme-A Carboxylase Genes Differ by Evolutionary Patterns and Selection Pressure Schemes Acting before and after Whole-Genome Duplications

article

LifeTime and improving European healthcare through cell-based interceptive medicine

scientific article published on 07 September 2020

Low recombination activity of R region located at both ends of the HIV-1 genome

scientific article published on 06 November 2012

MLPA-Based Analysis of Copy Number Variation in Plant Populations.

scientific article published on 21 February 2017

MTTE: an innovative strategy for the evaluation of targeted/exome enrichment efficiency

scientific article

Mechanisms involved in the development of chronic hepatitis C as potential targets of antiviral therapy.

scientific article

Modeling of the catalytic core of Arabidopsis thaliana Dicer-like 4 protein and its complex with double-stranded RNA.

scientific article published on 17 November 2016

Multi-agent model of hepatitis C virus infection

scientific article published on 11 November 2013

Mutations in human AID differentially affect its ability to deaminate cytidine and 5-methylcytidine in ssDNA substrates in vitro

scientific article published on 20 June 2017

Mutations in proteasome-related genes are associated with thyroid hemiagenesis

scientific article

Mutations in the N Terminus of the Brome Mosaic Virus Polymerase Affect Genetic RNA-RNA Recombination ⬇️

scientific article published on November 1, 1998

NPM1 alternative transcripts are upregulated in acute myeloid and lymphoblastic leukemia and their expression level affects patient outcome

Nonenzymatic hydrolysis of oligoribonucleotides. V. The elements affecting the process of self-hydrolysis

scientific article

Oncogenomic portals for the visualization and analysis of genome-wide cancer data

scientific article

Parallel DNA sequence assembly

Parallel Implementation of the Novel Approach to Genome Assembly

Phylogeny and molecular evolution of the hepatitis C virus

scientific article

Quasispecies nature of Pepino mosaic virus and its evolutionary dynamics.

scientific article published on 12 June 2010

RNA Partial Degradation Problem: Motivation, Complexity, Algorithm ⬇️

scientific article published on May 12, 2011

RNA degradome--its biogenesis and functions

scientific article

RNA interference and its role in the regulation of eucaryotic gene expression

scientific article

RNA motifs mediating in vivo site-specific nonhomologous recombination in (+) RNA virus enforce in vitro nonhomologous crossovers with HIV-1 reverse transcriptase

scientific article published on March 2000

RNA recombination in brome mosaic virus, a model plus strand RNA virus.

scientific article

RNA-RNA recombination in plant virus replication and evolution

scientific article published on January 2011

RNA-Seq-based analysis of differential gene expression associated with hepatitis C virus infection in a cell culture.

scientific article published on 25 October 2016

RNAi and viral vectors as useful tools in the functional genomics of plants. Construction of BMV-based vectors for RNA delivery into plant cells

scientific article published on 01 January 2002

Revealing a new activity of the human Dicer DUF283 domain in vitro

scientific article

Role of RNA structure in non-homologous recombination between genomic molecules of brome mosaic virus

scientific article published on April 2000

SNF1-related protein kinases type 2 are involved in plant responses to cadmium stress

scientific article published on 10 August 2012

Selection of RNA oligonucleotides that can modulate human dicer activity in vitro

scientific article

Selection of reference genes for qPCR- and ddPCR-based analyses of gene expression in Senescing Barley leaves

scientific article published on 27 February 2015

Simultaneous detection of mutations and copy number variation of NPM1 in the acute myeloid leukemia using multiplex ligation-dependent probe amplification

scientific article published on 04 February 2016

Single mutation converts mild pathotype of the Pepino mosaic virus into necrotic one ⬇️

scientific article published on April 22, 2011

Six Medicago truncatula Dicer-like protein genes are expressed in plant cells and upregulated in nodules.

scientific article published on 29 January 2016

Small RNA fragments derived from multiple RNA classes - the missing element of multi-omics characteristics of the hepatitis C virus cell culture model

scientific article

Spider Chitin Part II. The biomimetic potential and applications of Caribena versicolor tubular chitin

scholarly article

Spider Chitin: An Ultrafast Microwave-Assisted Method for Chitin Isolation from Caribena versicolor Spider Molt Cuticle

scholarly article

Structural and functional characteristics of two novel members of pathogensis-related multigene family of class 10 from yellow lupine+.

scientific article

Structural domains of the 3'-terminal sequence of the hepatitis C virus replicative strand

scientific article published on 24 October 2008

The Defense Response of to Peanut Stunt Virus Infection in the Presence of Symptom Exacerbating Satellite RNA

scientific article published on 23 August 2018

The Generation of Mouse and Human Huntington Disease iPS Cells Suitable for In vitro Studies on Huntingtin Function

scientific article

The RNA-RNA base pairing potential of human Dicer and Ago2 proteins

scientific article published on 26 October 2019

The application of microarray technology to the identification of Tc1-like element sequences in fish genomes

scientific article published in 2011

The brome mosaic virus-based recombination vector triggers a limited gene silencing response depending on the orientation of the inserted sequence

scientific article published on 25 November 2009

The clinical consequences of changes occurring in HCV population during the first weeks of chronic hepatitis C treatment with interferon and ribavirin

scientific article published in January 2005

The many faces of Dicer: the complexity of the mechanisms regulating Dicer gene expression and enzyme activities

scientific article published on 16 April 2015

The non-enzymatic hydrolysis of oligoribonucleotides VI. The role of biogenic polyamines

scientific article published on October 1999

Thiated derivatives of 2',3'-dideoxy-3'-fluorothymidine: synthesis, in vitro anti-HIV-1 activity and interaction with recombinant drug resistant HIV-1 reverse transcriptase forms

scientific article published on 6 June 2011

Tick receptor for outer surface protein A from Ixodes ricinus - the first intrinsically disordered protein involved in vector-microbe recognition

scientific article published on 26 April 2016

Time course transcriptional profiling of senescing barley leaves

scientific article published on 28 March 2015

Tissue localization of Toll-like receptors in biopsy specimens of liver from children infected with hepatitis C virus

scientific article published in October 2005

Towards prediction of HCV therapy efficiency

scientific article published in June 2010

Two types of defective RNAs arising from the tomato black ring virus genome ⬇️

scientific article published on December 28, 2011

Two types of non-homologous RNA recombination in brome mosaic virus.

scientific article published on 3 June 2005

Visceral larva migrans syndrome: analysis of serum cytokine levels in children with hepatic lesions confirmed in radiological findings

scientific article published on December 2014

Whole genome assembly from 454 sequencing output via modified DNA graph concept

scientific article

[Plant ABC transporters--the family with tradition]

scientific article published on 01 January 2006

[The influence of small regulatory RNAs on the viral infection--new strategies in HCV therapy]

scientific article published on 01 January 2006

[Trans-acting short interfering RNAs].

scientific article published on 01 January 2006

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