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List of works by Peter Holland

4273π: bioinformatics education on low cost ARM hardware

scientific article

A Burst of miRNA Innovation in the Early Evolution of Butterflies and Moths.

scientific article published on 8 January 2015

A Diversity of Conserved and Novel Ovarian MicroRNAs in the Speckled Wood (Pararge aegeria).

scientific article published on 10 November 2015

A comparison of statistical selection strategies for univariate and bivariate log-linear models

scientific article

A degenerate ParaHox gene cluster in a degenerate vertebrate

scientific article published on 25 September 2007

A family of diatom-like silicon transporters in the siliceous loricate choanoflagellates

scientific article (publication date: 7 April 2013)

A genome-wide view of transcription factor gene diversity in chordate evolution: less gene loss in amphioxus? ⬇️

scientific article published on March 1, 2012

A low diversity of ANTP class homeobox genes in Placozoa

article

A molecular analysis of the phylogenetic affinities of Saccoglossus cambrensis Brambell & Cole (Hemichordata).

scientific article published on June 1991

A novel avian W chromosome DNA repeat sequence in the lesser black-backed gull (Larus fuscus).

scientific article published in August 1990

A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation.

scientific article published in February 2016

A sister of NANOG regulates genes expressed in pre-implantation human development

scientific article published on April 2017

Amphioxus Hox genes: insights into evolution and development

scientific article published on 01 January 1996

Amphioxus and ascidian Dmbx homeobox genes give clues to the vertebrate origins of midbrain development

scientific article published on 16 June 2004

Amphioxus type I keratin cDNA and the evolution of intermediate filament genes

article

An amphioxus Emx homeobox gene reveals duplication during vertebrate evolution

scientific article

An amphioxus Krox gene: insights into vertebrate hindbrain evolution

scientific article published in October 2000

An amphioxus Msx gene expressed predominantly in the dorsal neural tube

scientific article published in April 1999

An antecedent of the MHC-linked genomic region in amphioxus

scientific article published on 29 January 2004

An orphan PRD class homeobox gene expressed in mouse brain and limb development

scientific article

Ancestral whole-genome duplication in the marine chelicerate horseshoe crabs

scientific article published on 30 September 2015

Ancient expansion of the hox cluster in lepidoptera generated four homeobox genes implicated in extra-embryonic tissue formation

scientific article

Ancient homeobox gene loss and the evolution of chordate brain and pharynx development: deductions from amphioxus gene expression.

scientific article published on 16 June 2010

Ancient origin of the Hox gene cluster

scientific article

Annotation, nomenclature and evolution of four novel homeobox genes expressed in the human germ line

scientific article published on 22 August 2006

Archetypal organization of the amphioxus Hox gene cluster.

scientific article

Asymmetry in a pterobranch hemichordate and the evolution of left-right patterning

scientific article published in December 2008

Bayesian phylogenetic analysis supports monophyly of ambulacraria and of cyclostomes

scientific article published in May 2002

Beyond the Hox: how widespread is homeobox gene clustering?

scientific article

Buddenbrockia is a cnidarian worm

scientific article

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species ⬇️

scientific article (publication date: 16 May 2012)

Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution

scientific article published on August 2015

Chromosomal mapping of ANTP class homeobox genes in amphioxus: piecing together ancestral genomes.

scientific article

Ciona

scientific article published on 01 September 2002

Ciona intestinalis ParaHox genes: evolution of Hox/ParaHox cluster integrity, developmental mode, and temporal colinearity.

scientific article published in September 2002

Classification and nomenclature of all human homeobox genes.

scientific article

Cloning and analysis of an HMG gene from the lamprey Lampetra fluviatilis: gene duplication in vertebrate evolution

scientific article published in January 1997

Cloning and evolutionary analysis of msh-like homeobox genes from mouse, zebrafish and ascidian ⬇️

scientific article published on February 15, 1991

Cloning of fish zinc-finger genes related to Krox-20 and Krox-24.

scientific article published on September 1991

Cloning of segment polarity gene homologues from the unsegmented brachiopod Terebratulina retusa (Linnaeus).

scientific article published in October 1991

Colinear and segmental expression of amphioxus Hox genes

scientific article published in September 1999

Comparative genomics of chondrichthyan Hoxa clusters

scientific article (publication date: 2 September 2009)

Complex history of a chromosomal paralogy region: insights from amphioxus aromatic amino acid hydroxylase genes and insulin-related genes

scientific article published on November 1998

Comprehensive survey and classification of homeobox genes in the genome of amphioxus, Branchiostoma floridae.

scientific article published on 17 September 2008

Compromised Function of the Pancreatic Transcription Factor PDX1 in a Lineage of Desert Rodents

scientific article published in 2021

Conservation and elaboration of Hox gene regulation during evolution of the vertebrate head

scientific article published in December 2000

Conservation of engrailed-like homeobox sequences during vertebrate evolution

scientific article published in December 1990

Conservation, Duplication, and Divergence of Five Opsin Genes in Insect Evolution

scientific article

Correction: The dynamics of vertebrate homeobox gene evolution: gain and loss of genes in mouse and human lineages.

scientific article published on 13 July 2011

Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.

scientific article published in May 2016

Degenerate evolution of the hedgehog gene in a hemichordate lineage

scholarly article

Developmental and spatial patterns of expression of the mouse homeobox gene, Hox 2.1.

scientific article

Developmental biology of pterobranch hemichordates: history and perspectives

scientific article

Dicyemids are higher animals

scientific article published in October 1999

Did homeobox gene duplications contribute to the Cambrian explosion?

scientific article

Discovery and classification of homeobox genes in animal genomes

scientific article

Dispersal of NK homeobox gene clusters in amphioxus and humans

scholarly article

Divergent genes in gerbils: prevalence, relation to GC-biased substitution, and phenotypic relevance

scientific article published on 19 October 2020

Diversity of human and mouse homeobox gene expression in development and adult tissues

scientific article

Do cnidarians have a ParaHox cluster? Analysis of synteny around a Nematostella homeobox gene cluster

scientific article

Dynamic Molecular Evolution of Mammalian Homeobox Genes: Duplication, Loss, Divergence and Gene Conversion Sculpt PRD Class Repertoires

scientific article published on 07 June 2021

Embryonic development of heads, skeletons and amphioxus: Edwin S. Goodrich revisited.

scientific article published in January 2000

Enigmatic orthology relationships between Hox clusters of the African butterfly fish and other teleosts following ancient whole-genome duplication

scientific article

Estimation of Hox gene cluster number in lampreys.

scientific article published in May 1998

Evidence for 14 homeobox gene clusters in human genome ancestry

scientific article

Evolution of 28S ribosomal DNA in chaetognaths: duplicate genes and molecular phylogeny

scientific article published in February 1997

Evolution of homeobox genes ⬇️

scientific article published on September 10, 2012

Evolution of regional identity in the vertebrate nervous system

scientific article published on January 1995

Evolution of the Alx homeobox gene family: parallel retention and independent loss of the vertebrate Alx3 gene.

scientific article published on July 2011

Evolutionary origin and functional divergence of totipotent cell homeobox genes in eutherian mammals

scientific article

Expression of homeo box genes during mouse development: a review

scientific article published on July 1988

Expression of the homeobox gene, Hox 2.1, during mouse embryogenesis

scientific article published on November 1988

Expression of the homeobox genes Hox 2.1 and 2.6 during mouse development

scientific article published on 01 January 1988

Extensive chordate and annelid macrosynteny reveals ancestral homeobox gene organization.

scientific article published on 4 July 2011

Gene and domain duplication in the chordate Otx gene family: insights from amphioxus Otx.

scientific article published in May 1998

Gene duplication: past, present and future

scientific article

Gene duplications and the origins of vertebrate development

scientific article published on 01 January 1994

Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster

scientific article published on 3 July 2017

Genomic organisation of the seven ParaHox genes of coelacanths

scientific article

HomeoDB2: functional expansion of a comparative homeobox gene database for evolutionary developmental biology

scientific article published on November 2011

HomeoDB: a database of homeobox gene diversity

scientific article published in September 2008

Homeobox genes and the vertebrate head.

scientific article published on January 1988

Homology and developmental genes.

scientific article published in November 1997

How are comparative genomics and the study of microRNAs changing our views on arthropod endocrinology and adaptations to the environment?

scientific article published on 07 March 2013

Hox genes and chordate evolution.

scientific article published on February 1996

Hsp70 sequences indicate that choanoflagellates are closely related to animals

scientific article published on 01 June 2001

Identification and characterisation of five novel miniature inverted-repeat transposable elements (MITEs) in amphioxus (Branchiostoma floridae).

scientific article published on 10 April 2006

In vivo expression of mRNA for the Ca++-binding protein SPARC (osteonectin) revealed by in situ hybridization

scientific article

Introduction: gene duplication in development and evolution

scientific article

Intron insertion as a phylogenetic character: the engrailed homeobox of Strepsiptera does not indicate affinity with Diptera.

scientific article published on November 1999

Jellyfish genomes reveal distinct homeobox gene clusters and conservation of small RNA processing

scientific article published on 19 June 2020

Molecular characterisation of group I allergen Eur m I from house dust mite Euroglyphus maynei

scientific article

Molecular evolution of the brain of chordates

scientific article published in January 1998

Molecular genetic analysis of sperm competition in the damselfly Ischnura elegans (Vander Linden).

scientific article published in October 1996

More genes in vertebrates?

scientific article

Mouse Obox and Crxos modulate preimplantation transcriptional profiles revealing similarity between paralogous mouse and human homeobox genes

scientific article published on 27 January 2018

Mutation of amphioxus Pdx and Cdx demonstrates conserved roles for ParaHox genes in gut, anus and tail patterning

scientific article published on 16 June 2020

Neural tube is partially dorsalized by overexpression of HrPax-37: the ascidian homologue of Pax-3 and Pax-7.

scientific article published on July 1997

New genes from old: asymmetric divergence of gene duplicates and the evolution of development

scientific article published on February 2017

No more than 14: the end of the amphioxus Hox cluster

scientific article

Novel and divergent genes in the evolution of placental mammals

article

Of eyes and embryos: subfunctionalization of the CRX homeobox gene in mammalian evolution

scientific article published on 24 July 2019

Order out of chaos in the nucleus

scientific article

Origin and evolution of a myxozoan worm

scientific article published on 27 June 2007

Origin of patterning in neural tubes

scientific article published in November 1996

Orphan worm finds a home: Buddenbrockia is a myxozoan

scientific article (publication date: June 2002)

Parallel retention of Pdx2 genes in cartilaginous fish and coelacanths

scientific article

Patterns of conservation and change in honey bee developmental genes

scientific article

Protein evolution of ANTP and PRD homeobox genes

scientific article

Protochordates

scientific article

Protochordates

scientific article published on 01 January 2008

Publisher Correction: Widespread patterns of gene loss in the evolution of the animal kingdom

scientific article published on 01 April 2020

Pursuing the functions of vertebrate homeobox genes: progress and prospects

scientific article published on June 1989

Rare genomic changes as a tool for phylogenetics

scientific article (publication date: November 2000)

Reconstruction of the ancestral metazoan genome reveals an increase in genomic novelty.

scientific article published on 30 April 2018

Reinforcing the egg-timer: recruitment of novel lophotrochozoa homeobox genes to early and late development in the pacific oyster

scientific article published on 27 January 2015

Sipunculan ParaHox genes

article

Spatially restricted patterns of expression of the homeobox-containing gene Hox 2.1. during mouse embryogenesis.

scientific article published in January 1988

Strepsiptera, phylogenomics and the long branch attraction problem

scientific article

The Animal Kingdom

The Hox cluster microRNA miR-615: a case study of intronic microRNA evolution

scientific article

The Mnx homeobox gene class defined by HB9, MNR2 and amphioxus AmphiMnx.

scientific article published in February 2001

The ParaHox gene cluster is an evolutionary sister of the Hox gene cluster.

scientific article

The amphioxus Hox cluster: deuterostome posterior flexibility and Hox14

scientific article published on 01 September 2000

The dynamics of vertebrate homeobox gene evolution: gain and loss of genes in mouse and human lineages

scientific article

The effect of gene duplication on homology

scientific article

The evolution of homeobox genes: Implications for the study of brain development

scientific article

The evolution of multicellularity and early animal genomes

scientific article published on December 2003

The future of evolutionary developmental biology

scientific article

The genomes of four tapeworm species reveal adaptations to parasitism

scientific article

The molecular evolution of ZFY-related genes in birds and mammals

article

The origin and evolution of ARGFX homeobox loci in mammalian radiation

scientific article

The origins of multicellularity: a multi-taxon genome initiative

scientific article published in February 2007

The oyster genome reveals stress adaptation and complexity of shell formation

scientific article

The phylogenetic affinities of the chaetognaths: a molecular analysis

scientific article published in May 1993

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

scientific article

The urbilaterian Super-Hox cluster

scientific article published on 9 May 2008

The zootype and the phylotypic stage

scientific article published in February 1993

Tripartite organization of the ancestral chordate brain and the antiquity of placodes: insights from ascidian Pax-2/5/8, Hox and Otx genes.

scientific article published on March 1998

Unity or diversity?

scientific article published in August 1996

Vertebrate evolution: Something fishy about Hox genes ⬇️

scientific article published on September 1, 1997

Wholemount In Situ Hybridization to Amphioxus Embryos

scientific article published on 01 January 2008

Wholemount in situ hybridization to amphioxus embryos

scientific article published on 01 January 1999

Widespread patterns of gene loss in the evolution of the animal kingdom

scientific article published on 24 February 2020

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