List of works - Alexei Finkelstein

A new approach to artificial and modified proteins: theory-based design, synthesis in a cell-free system and fast testing of structural properties by radiolabels.

scientific article published in August 1994

A new approach to the design of a sequence with the highest affinity for a molecular surface

scientific article published in October 1992

A structural perspective of compensatory evolution

scientific article

A theory of protein molecule self-organization. IV. Helical and irregular local structures of unfolded protein chains

scientific article published on 01 May 1976

Accurate general method for lattice approximation of three-dimensional structure of a chain molecule

scientific article published on 01 June 1995

Accurate mean-force pairwise-residue potentials for discrimination of protein folds ⬇️

scientific article published on January 1, 1997

Adjusting potential energy functions for lattice models of chain molecules

scientific article

Alpha-helix and beta-hairpin Folding from experiment, analytical theory and molecular dynamics simulations.

scientific article

Average and extreme multi-atom Van der Waals interactions: strong coupling of multi-atom Van der Waals interactions with covalent bonding.

scientific article

Can protein unfolding simulate protein folding? ⬇️

scientific article published on 01 August 1997

Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics

scientific article published on 01 May 2003

Comparison of X-ray and NMR structures: Is there a systematic difference in residue contacts between X-ray- and NMR-resolved protein structures?

scientific article published on 01 July 2005

Comparison of predicted and experimentally determined secondary structure of adenyl kinase

scientific article published in Nature

Computation of biopolymers: a general approach to different problems

scientific article published in January 1993

Constructing lattice models of protein chains with side groups

scientific article published in January 1995

Contact order revisited: influence of protein size on the folding rate

scientific article published on September 2003

Correction to "Sublimation Entropy and Dissociation Constants Prediction by Quantitative Evaluation of Molecular Mobility in Crystals"

scientific article published on 27 November 2018

Cunning simplicity of a hierarchical folding

scientific article published on 01 December 2002

Cunning simplicity of a stoichiometry driven protein folding thesis

scientific article published in February 2011

Cunning simplicity of protein folding landscapes

scientific article published on 01 August 2001

Development and testing of PFFSol1.1, a new polarizable atomic force field for calculation of molecular interactions in implicit water environment

scientific article published on 9 April 2012

Did the primitive ribosomal RNA code primitive ribosomal protein?

scientific article published on October 15, 1977

Dynamic transitions of the transmembrane domain of diphtheria toxin: disulfide trapping and fluorescence proximity studies

scientific article published on 01 September 1994

Folding of chains with random and edited sequences: similarities and differences

scientific article published on 01 September 1995

Folding of circular permutants with decreased contact order: general trend balanced by protein stability 1 1Edited by A. R. Fersht

Folding rate dependence on the chain length of RNA-like heteropolymers

scientific article published on 01 January 1998

From analysis of protein structural alignments toward a novel approach to align protein sequences

scientific article published in February 2004

Golden triangle for folding rates of globular proteins.

scientific article

How homologs can help to predict protein folds even though they cannot be predicted for individual sequences

scientific article published on 01 January 1998

How to determine the size of folding nuclei of protofibrils from the concentration dependence of the rate and lag-time of aggregation. I. Modeling the amyloid protofibril formation.

scientific article published on 24 January 2014

How to determine the size of folding nuclei of protofibrils from the concentration dependence of the rate and lag-time of aggregation. II. Experimental application for insulin and LysPro insulin: aggregation morphology, kinetics, and sizes of nuclei

scientific article published on 24 January 2014

Levinthal's question answered … again?

scientific article published on 9 January 2013

Making optimal use of empirical energy functions: force-field parameterization in crystal space

scientific article

Many-atom van der Waals interactions lead to direction-sensitive interactions of covalent bonds

scientific article published in August 2008

Optimization of protein structure on lattices using a self-consistent field approach.

scientific article

Outlining Folding Nuclei in Globular Proteins

scientific article published on 01 February 2004

Perfect temperature for protein structure prediction and folding.

scientific article

Physical reasons for secondary structure stability: alpha-helices in short peptides

scientific article published on 01 January 1991

Predicted β-structure stability parameters under experimental test ⬇️

scientific article published on 01 February 1995

Prediction of protein folding rates from the amino acid sequence-predicted secondary structure.

scholarly article

Prediction of protein secondary structure based on physical theory. Histones

scientific article published on 01 March 1989

Prediction of the secondary structure of the L7, L12 proteins of the E. coli ribosome

scientific article published on 01 August 1973

Prediction of the three-dimensional structure for ribosomal protein L25

scientific article published on 01 December 1975

Principal folding pathway and topology of all-beta proteins

scientific article published on May 1, 1979

Protein folding as flow across a network of folding-unfolding pathways. 1. The mid-transition case.

scientific article published in June 2010

Protein folding as flow across a network of folding-unfolding pathways. 2. The "in-water" case.

scientific article published in June 2010

Protein structure: what is it possible to predict now?

scientific article

Rate of protein folding near the point of thermodynamic equilibrium between the coil and the most stable chain fold

scientific article published on 01 January 1997

Recognition of protein structure on coarse lattices with residue- residue energy functions ⬇️

scientific article published on October 1, 1997

Recognition of signal sequences.

scientific article published on September 1983

Reduction of the Search Space for the Folding of Proteins at the Level of Formation and Assembly of Secondary Structures: A New View on the Solution of Levinthal's Paradox.

scientific article published on 9 September 2015

Residue-residue mean-force potentials for protein structure recognition.

scientific article published in August 1997

Restrictions to protein folding determined by the protein size.

scientific article published on 16 May 2013

S6 permutein shows that the unusual target topology is not responsible for the absence of rigid tertiary structure in de novo protein albebetin.

scientific article

Search for the most stable folds of protein chains: I. Application of a self-consistent molecular field theory to a problem of protein three-dimensional structure prediction

scientific article published on 01 May 1996

Search for the most stable folds of protein chains: II. Computation of stable architectures of beta-proteins using a self-consistent molecular field theory

scientific article published in May 1996

Search for the stable state of a short chain in a molecular field

scientific article published in October 1992

Secondary structure of globular proteins at the early and the final stages in protein folding

scientific article published on 01 November 1993

Statistical analysis of the correlation among amino acid residues in helical, beta-structural and non-regular regions of globular proteins

scientific article published on 01 December 1971

Strict experimental evidence that apo-chaperonin GroEL does not accelerate protein folding, although it does accelerate one of its steps

scientific article published on 24 November 2015

Structural model for interferons

scientific article

Sublimation Entropy and Dissociation Constants Prediction by Quantitative Evaluation of Molecular Mobility in Crystals.

scientific article published on 7 June 2017

The price of lost freedom: entropy of bimolecular complex formation

scientific article published on 01 October 1989

Theoretical study of a landscape of protein folding-unfolding pathways. Folding rates at midtransition.

scientific article published in August 2001

Theory of cooperative transitions in protein molecules. II. Phase diagram for a protein molecule in solution

scientific article published on 01 October 1989

Theory of protein molecule self-organization. I. Thermodynamic parameters of local secondary structures in the unfolded protein chain

scientific article published on 01 March 1977

Theory of protein molecule self-organization. II. A comparison of calculated thermodynamic parameters of local secondary structures with experiments

scientific article published on 01 March 1977

Theory of protein molecule self-organization. III. A calculating method for the probabilities of the secondary structure formation in an unfolded polypeptide chain

scientific article published in March 1977

Theory of protein secondary structure and algorithm of its prediction

scientific article published in January 1983

There and back again: Two views on the protein folding puzzle.

scientific article

Threading with chemostructural restrictions method for predicting fold and functionally significant residues: application to dipeptidylpeptidase IV (DPP-IV).

scientific article

Time to overcome the high, long, and bumpy free energy barrier in a multi-stage process: the generalized steady-state approach.

scientific article published on 19 December 2014

Trend of amino acid composition of proteins of different taxa

scientific article published on 01 April 2006

Weak points of antiparallel beta-sheets. How are they filled up in globular proteins?

scientific article published on 01 June 1993

What is Responsible for Atypical Dependence of the Rate of Amyloid Formation on Protein Concentration: Fibril-Catalyzed Initiation of New Fibrils or Competition with Oligomers?

scientific article published on 7 February 2018

What is the probability of a chance prediction of a protein structure with an rmsd of 6 A?

scientific article

Why do protein architectures have Boltzmann-like statistics?

scientific article published on 01 October 1995

cI and lexA repressors consist of three cro-like domains

scientific article published on 01 October 1982

List of works by Alexei Finkelstein

A new approach to artificial and modified proteins: theory-based design, synthesis in a cell-free system and fast testing of structural properties by radiolabels.

A new approach to the design of a sequence with the highest affinity for a molecular surface

A structural perspective of compensatory evolution

A theory of protein molecule self-organization. IV. Helical and irregular local structures of unfolded protein chains

Accurate general method for lattice approximation of three-dimensional structure of a chain molecule

Accurate mean-force pairwise-residue potentials for discrimination of protein folds ⬇️

Adjusting potential energy functions for lattice models of chain molecules

Alpha-helix and beta-hairpin Folding from experiment, analytical theory and molecular dynamics simulations.

Average and extreme multi-atom Van der Waals interactions: strong coupling of multi-atom Van der Waals interactions with covalent bonding.

Can protein unfolding simulate protein folding? ⬇️

Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics

Comparison of X-ray and NMR structures: Is there a systematic difference in residue contacts between X-ray- and NMR-resolved protein structures?

Comparison of predicted and experimentally determined secondary structure of adenyl kinase

Computation of biopolymers: a general approach to different problems

Constructing lattice models of protein chains with side groups

Contact order revisited: influence of protein size on the folding rate

Correction to "Sublimation Entropy and Dissociation Constants Prediction by Quantitative Evaluation of Molecular Mobility in Crystals"

Cunning simplicity of a hierarchical folding

Cunning simplicity of a stoichiometry driven protein folding thesis

Cunning simplicity of protein folding landscapes

Development and testing of PFFSol1.1, a new polarizable atomic force field for calculation of molecular interactions in implicit water environment

Did the primitive ribosomal RNA code primitive ribosomal protein?

Dynamic transitions of the transmembrane domain of diphtheria toxin: disulfide trapping and fluorescence proximity studies

Folding of chains with random and edited sequences: similarities and differences

Folding of circular permutants with decreased contact order: general trend balanced by protein stability 1 1Edited by A. R. Fersht

Folding rate dependence on the chain length of RNA-like heteropolymers

From analysis of protein structural alignments toward a novel approach to align protein sequences

Golden triangle for folding rates of globular proteins.

How homologs can help to predict protein folds even though they cannot be predicted for individual sequences

How to determine the size of folding nuclei of protofibrils from the concentration dependence of the rate and lag-time of aggregation. I. Modeling the amyloid protofibril formation.

How to determine the size of folding nuclei of protofibrils from the concentration dependence of the rate and lag-time of aggregation. II. Experimental application for insulin and LysPro insulin: aggregation morphology, kinetics, and sizes of nuclei

Levinthal's question answered … again?

Making optimal use of empirical energy functions: force-field parameterization in crystal space

Many-atom van der Waals interactions lead to direction-sensitive interactions of covalent bonds

Optimization of protein structure on lattices using a self-consistent field approach.

Outlining Folding Nuclei in Globular Proteins

Perfect temperature for protein structure prediction and folding.

Physical reasons for secondary structure stability: alpha-helices in short peptides

Predicted β-structure stability parameters under experimental test ⬇️

Prediction of protein folding rates from the amino acid sequence-predicted secondary structure.

Prediction of protein secondary structure based on physical theory. Histones

Prediction of the secondary structure of the L7, L12 proteins of the E. coli ribosome

Prediction of the three-dimensional structure for ribosomal protein L25

Principal folding pathway and topology of all-beta proteins

Protein folding as flow across a network of folding-unfolding pathways. 1. The mid-transition case.

Protein folding as flow across a network of folding-unfolding pathways. 2. The "in-water" case.

Protein structure: what is it possible to predict now?

Rate of protein folding near the point of thermodynamic equilibrium between the coil and the most stable chain fold

Recognition of protein structure on coarse lattices with residue- residue energy functions ⬇️

Recognition of signal sequences.

Reduction of the Search Space for the Folding of Proteins at the Level of Formation and Assembly of Secondary Structures: A New View on the Solution of Levinthal's Paradox.

Residue-residue mean-force potentials for protein structure recognition.

Restrictions to protein folding determined by the protein size.

S6 permutein shows that the unusual target topology is not responsible for the absence of rigid tertiary structure in de novo protein albebetin.

Search for the most stable folds of protein chains: I. Application of a self-consistent molecular field theory to a problem of protein three-dimensional structure prediction

Search for the most stable folds of protein chains: II. Computation of stable architectures of beta-proteins using a self-consistent molecular field theory

Search for the stable state of a short chain in a molecular field

Secondary structure of globular proteins at the early and the final stages in protein folding

Statistical analysis of the correlation among amino acid residues in helical, beta-structural and non-regular regions of globular proteins

Strict experimental evidence that apo-chaperonin GroEL does not accelerate protein folding, although it does accelerate one of its steps

Structural model for interferons

Sublimation Entropy and Dissociation Constants Prediction by Quantitative Evaluation of Molecular Mobility in Crystals.

The price of lost freedom: entropy of bimolecular complex formation

Theoretical study of a landscape of protein folding-unfolding pathways. Folding rates at midtransition.

Theory of cooperative transitions in protein molecules. II. Phase diagram for a protein molecule in solution

Theory of protein molecule self-organization. I. Thermodynamic parameters of local secondary structures in the unfolded protein chain

Theory of protein molecule self-organization. II. A comparison of calculated thermodynamic parameters of local secondary structures with experiments

Theory of protein molecule self-organization. III. A calculating method for the probabilities of the secondary structure formation in an unfolded polypeptide chain

Theory of protein secondary structure and algorithm of its prediction

There and back again: Two views on the protein folding puzzle.

Threading with chemostructural restrictions method for predicting fold and functionally significant residues: application to dipeptidylpeptidase IV (DPP-IV).

Time to overcome the high, long, and bumpy free energy barrier in a multi-stage process: the generalized steady-state approach.

Trend of amino acid composition of proteins of different taxa

Weak points of antiparallel beta-sheets. How are they filled up in globular proteins?

What is Responsible for Atypical Dependence of the Rate of Amyloid Formation on Protein Concentration: Fibril-Catalyzed Initiation of New Fibrils or Competition with Oligomers?

What is the probability of a chance prediction of a protein structure with an rmsd of 6 A?

Why do protein architectures have Boltzmann-like statistics?

cI and lexA repressors consist of three cro-like domains